Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBQLN1P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_9) and its respective parental gene (in scaffold_m19_p_2). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_9:70773396-70773716  UCSC
Strand -
Parental Sequence UBQLN1_x1
Parental seq. overlap 266 bp
Parental seq. overlap (%) 3.4%
Genomic Region Intergenic
Retrocopy Summary UBQLN1P1, located on scaffold_m19_p_9:70773396-70773716, is a retrocopy of the parental gene UBQLN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBQLN1
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_2:36729937-36771090
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBQLN1P1
Chimpanzee Pan troglodytes UBQLN1P1
Bonobo Pan paniscus UBQLN1P1
Gorilla Gorilla gorilla UBQLN1P1
Orangutan Pongo abelii UBQLN1P1
Gibbon Nomascus leucogenys UBQLN1P1
Green monkey Chlorocebus sabaeus UBQLN1P1
Crab-eating macaque Macaca fascicularis UBQLN1P1
Rhesus Macaca mulatta UBQLN1P1
Baboon Papio anubis UBQLN1P1
Golden snub-nosed monkey Rhinopithecus roxellana UBQLN1P1
Marmoset Callithrix jacchus UBQLN1P1
Mouse lemur Microcebus murinus UBQLN1P2
Mouse Mus musculus Ubqln1P1
Rat Rattus norvegicus Ubqln1P2
Chinese hamster Cricetulus griseus Ubqln1_1P1
Rabbit Oryctolagus cuniculus UBQLN1P1
Pig Sus scrofa UBQLN1P1
Cow Bos taurus UBQLN1P2
Sheep Ovis aries UBQLN1P1
Dolphin Tursiops truncatus UBQLN1P1
Horse Equus caballus UBQLN1P1
Dog Canis familiaris UBQLN1P1
Panda Ailuropoda melanoleuca UBQLN1P1
Cat Felis catus UBQLN1P1
Velvety free-tailed bat Molossus molossus UBQLN1P1
Greater mouse-eared bat Myotis myotis UBQLN1P2
Greater horseshoe bat Rhinolophus ferrumequinum UBQLN1P1
Egyptian rousette Rousettus aegyptiacus UBQLN1P1
Sloth Choloepus didactylus UBQLN1P3
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>UBQLN1P1
CCAGGAATGCAGAGCTTGCTGCAACAGATAACTGAAAACCCCCAGCTGATTCAGAATATGCTGTCTGCGCCCTACATGAGAAGCATGATGCAGTCGCTGACCCAGAATCCAGATTTGGCTGCACAGATGATGCTGAATAGCCCGGTGTTTACTGCAAATCCTCAGCTGCAGGAGCAGATGCGTCCACAGCTCCCTGCTTTTGTGCAGCAGATGCAGAATCCAGACACGCTGTCAGCTATGTCAAACCCAAGAGCAATGCAGGCTTTGATGCAGATCCAGCAGGGGCTACAGACATTAGCCACTGAAGCGCCTGGCCTCATT
>UBQLN1_x1
gatgtgagagagaaacatcaattggttgcctcttacacatgtctgaccagggaccaaacccacaacccaggcatgtgccctgactgggactcaaacctgagacatgactggaattgaacccacaacctttttggtatacaggaagacactacaactaactgagccctttggccagggcTACAATAAACTTGTCTAACCAACAAAAAATTAGTTCTGTGACTTTACTGAGACTTTTAAAAATTTAACAAACTGATAACTCTATTTAAAGCAAGTGTCAGGAAACTTTTCCTGTAGAGGACCTCTTTGCAGGTCAAGAGGCAAAATCAAGACTACTACAGTACATTAGGGGATAACACATGTTTTTGTTTTTTAATGATGGGATTAAAAATATAATTGTGTATAGTATTTTTTATACATATTTACATGTGATTGGAATGGAAGATTTTTTTAGGGATGATGTTTTTGCTTACTTGACATTCACACAATTTCTTGTCAAAATCAGTTGCTgctctgactggtgtagctcagttggttgggcattggtctgcaaagagaaagtcactgattcagtttttggtcagggctcatacctggcctgtgggttcagtccccaataggagtgcctatgagaggcagtgaatcagatattttgcacattgatgtttctctctctttttctccctctttccccctctctaaaaatgaataaaCACTTAAAAAAATCAATTGCAAATGTTCATTGATTAATAGTGATATATActgtattttgccgtgtgtaatgtgctgctatgtttctatgcacattatacacagaattattatagccatggtatctaatcattatactcatgtataatgcacaccctattttcccctcaaaaatttggtcataaagtgtgtgttatacatggcaaaatacggGTAATGTGATTTTACTTATTTCATTCAAATAtcgttgtttggtatggcagaggattggttttaggattctctggataccaaaacctatgatgctcaagtcccttgtataaaatgatgcattgtttgcatataacctatATTTGCATgtagaatgtgcctacatatcactttattcatgttgattcagcatagagcttggcacgtgacaaatttaagttttgctttcaggaactttttctgggatttttttttttctgaatgtttcaatttgtggttggttgactctgcagatgcaaaactcttggctacagagggctgactgtatttattccagaaacatatgattttaatagcatattcatcagttggaaaacattaaaaggattctattagattcttcgctgcttttatgtcatggcggattaatcacttccaattgaaggttaggtggtaggcctcagttataggtaaataagttttgaaatggtggaagtgttctttgcacttgtgctgaggtccaaaaagggctgctggaatggcaatattagctcaaaaatacatctgttgcaagtttgtgggaatggagtccttcttgttttggcctttgacagtataagaacttgtaaagcagcttgacattgcttgtgatatgaacacttttggttgttgaaatgactttaccacagtatgagtttctcatgtaaattttttttttttgccttgtaatttgtgttgaattaattgagaaacattaccaagtctctagcaaaaggtgatttccaaagtcatttagtctttcatatcagtggatgggtagttcaaaagaatttcaattttagccctgagctaaaaaaaaaattgcaataaaactatgctgagccactgagctgctgtgtggttgagtaagtcacgatatttctcacaaaaagtcacgaaattgactatggtttagttcacaaaagtgaatgatgtctaccattgataactcctactggttgaatgacatgagtcaaaacaatttttagagtaccttccaatgaataagacagtaagtaatcttagtctttgaatatattataCGAGGGAGAACCCCCCCCCCCCAAAAAAAAAAAACTGGTGTTATCTcattgtcgtgagaggcagcttttggcttcagtgaaatttttttgatggctctttctacacgtttgcctgtttcatgatgggtgatttatgagtgcacctgcccacacagtgtctggtgttcagtttttgaccaaaaacagcatgatctccatgccccaccctcctattcacatggtctcacccctagtgacttttatttttgtatccctggataaacaaagtcttcaaagggaaatgttttgctgatgttgaggaggtgaaacaaaaatggcagaagtactaaaaggcatcaaaaccgatgagttcaaaaactgttttgaacaatggaaaaacacatcttgataggtgtattacatcaaatagagagtactttgaagatgactgaagttttaagaataaacaattttttataaatTACAGGGGTTTTGGGGGTCGACctttgtatttttataagctttgtatatttttccaactaattcttttactccacattcttttatcactatcagatatagcacattttagcagattctacttaaggttgttctgaactagtattttctcaattttgaaataatttacctgtagttattccatgcagactgttttggagactaatttttcagtcccttctaacatagcatttacccctcaagttaaacaggaactgagcagtgttagtaacatctatcagctcatcaagaaccaaggtataccactcaaaataatttacattgtttcttGTTTTTTCTTTTTTAAATTAATTTTTAAAATTTTaatgtattttattggttgtgctattacagttgtcccaatatttttctcccctttattcccctctgccctatattccccctcctaccagcattcccccaccttaattcatgtccatgggtcatacatataagttctttagcatctccatatcccatactattcttaacctccccctgtctattctgtacctaccatttatgcttcttattccctgtaccttttcccccatccttccccaacccctccccactgataacccaccatgtgatctccatttctgtcattctgttcctgttccagttgttttcttaatttgtttttgtttttttttaggttcagttgttgatagttgtgagtttctttcattttactgtttgtatttttgatcttctttttcttagacaaatccctttaacatttcatacaataagggcttggtgatgatgaactcctttaacttggccttatctgagaagcactttgtctgcctttctattctaaatgataactttgctggatagagcaatcttggatataggtccttgcctctcatgacttcaaatactccttttcagccccttcttgcctgcaaggtttcttttgagaaagcagctgatagtcttatgggacctcctttgtagagaactctcatcttttgctgcttttaagattctctcctcatcttaatcttgggtaatgtaattatgatgtgccttggtgtgtgcttccttgagtccaacttctttaggactctctgagcttcctggacttcctggaagtctatttcctttgtcagattagggaagttctctttcattatcttttcaaataagttttcaatttcttgctcttcctcttctggcatccctatgattcagatgttggaacatttagttgtcctgaaggtttctaagcctctcctcatttttttgaattcttatttcttcattctgttctggttgaatgtttcttcctgctttctgatccaaactgttgatttgagtcctggtttccttcccttcactgttgggtgtctttatttcacttttcatagctttcactttttcctctattttccagccatactcagccatttccatgagcattctgattatgagtgttttgaactctgcatgcatctgataggttggctatctcttcatcacttagttgtattttttctggagctttgatgtgttctttcatttggactgtatttctttgtttcggtgcattgtaagagacggagccttaggtgttcaccagggtagggtaagctgcattgtggtgctatatgtaggggaagggtccgagaggaaacagtgccgtttgctcagctttctgccacctttcagtcacttcctctgctacccacaagcatattgggcccttctggtgctgattctcaggtgggtagttttgtggttgttttcgtgtatggtctaggaccctgtggatctctccaaagaactctcctgtgaggcagggagtttctcatgccaactcaacccccacaggtattttcagccagaggttttcaggctttatttccctacactggaaccctgagttacttggcctgtctagctccctagctgttcctcctggttcatccccacacaaattgggactgtctgctctgccagcagctgcctcaccaggagtgctgtccaccccactgcctatcttcacccctcctgccagtctggatgaatgtttcttctgtaactacttggttttagacttatatacagtttgattttctggcagttctagttattattttttttaatttgttgttgtccttcttttgattgtgtgaggaggcagagtatatctacctacgcctccatgttggctggaagtcAgtgcatatattcttttcaattagtgtttttggtttcttgggacatatccatgtatatcctgaaatggaattgctgggtcataagacagttctgttaattttttgaggaaccttcatcctgttttttatagtgactgcaccaatctacatccccatcaacagtgcacgagtgttccattttctgcacatcctcatcaacactttttgtttgtgatatctcattgtagttttaattgttgtttgatgattagtgaccttgagcatcttttcaatgtctgttggtcatctgtatgtcctccttagagaagtttgtcttcaggttctctgcccatttcttaattggatttttttggtattgcattatatgagatttttatacattttggatatcatccctttatgggatgtgtcattgtcttttcattttgctggtgttgttccttgctgttcagaaattatttagtttgatttagtcccatttgtttactttttcttttctttcccttgcctgaggagatgtatcagaaaatataattgcttagagaaatgtcagagattttaccgcctgtgttttcatgtaggagttctgcggtttgagtcttacatCTAGTATGTTCAACACACCAGGAATGCAGAGCTTGTTGCAACAAATAACTGAAAACCCACAGCTTATGCAAAACATGTTGTCTGCCCCCTACATGAGAAGCATGATGCAGTCACTAAGCCAGAACCCTGACCTTGCTGCACAGATGATGCTGAATAATCCCCTATTTGCTGGAAATCCTCAGCTTCAAGAACAAATGAGACAACAGCTCCCAACTTTCCTCCAACAAATGCAGAATCCTGATACACTATCGGCAATGTCAAACCCTAGAGCGATGCAGGCCTTGTTGCAGATTCAGCAGGGTTTACAGACATTAGCAACGGAAGCCCCTGGCCTCATCCCAGGGTTTACTCCTGGCCTAGGGGCATTAGGAAGCACTGGAGGCTCTTCAGGAACCAACAGCTCTAGCTCTACCACTAGTGAAAACCCAAGTCCCACGGCAGCAACCACCGAACCTGGACACCAGCAGTTTATCCAGCAAATGCTGCAGGCTCTTGCTGGAGTAAATCCTCAGCTACAGAATCCAGAAGTCAGATTTCAGCAACAACTGGAACAGCTCAGTGCAATGGGGTTTTTGAACCGTGAAGCAAACTTGCAAGCGCTGATAGCAACCGGAGGCGATATCAACGCAGCTATTGAACGGTTACTGGGCTCCCAGCCATCATAGCAGCATTTCTGTATCTTGAAAAAATGTAATTTATTTTTGATAACGGCTCTTAAATCTTTAAAATACCTGCTTTATTTCCTTTTGACTTTTGGAATTCTGTGCTGTTATAAACAAACCCAGTATGATGCATTTTAAGGTGGAGTGCAGTAAGATGTGTGGGtttctctgtgtttttgtttttctttttcttttttGGAACAATGGGAATCAACGCTTTTTCATTTAAGGCTACTGCATGCATCAAACACTTCTGCATTTCTTGTAATTTTTTAAAAGAATCACCATTTATAGTTGGGTGAACAGATTTTTGTCCTGCATCTGTCCAGTTTATTTGCTTTTTAAACATTAGCCTATGATAGTAATTTATGTAGAATAAAAGCATTAAAAGAAGCAAATCATTTGCGCTCTATAATTTGTGGTACAATATTGCTTATTGTGACTTTGGCATGTGTTTTTTGCAAACAAAATGCTGTAAGATTTATACTACTGACAGTTTTACTTTATTTGTATACAATATATTATGCACATTTGGGACTGCATTTCTAGAAACATACTGCAGTAGATTATCTGAGCAAAACACTTGTAACCAAAAAAGTAAAGATAAGGACATACTTTGAAGTATTTCCTAATTGTGTAGAATCTTACAGCATCTTTGATAAAACATCTCTTAGCAAAAGTGCCAGTTGGTCAGGTTTGTTGAGTAGTAAAGCTGATTCTGGTTATCTCTTAAGGACAATTAATTGTACAGACATCATAATGTAACATTGTGTCAACATTCACTGATTGATTGTAAATTACCGTAATTTTTGTGCTGACTGAAGGAGCACTGTAGTATAACCCAAAAGTGCATTTGCCTAGGACTTTTCAGCTTCTCCCATAGGTAGTTTAACAGGCATTACAGTTTGTAATTGAAATATGTTGCTTTCACTGAAAGTGTCTTGATGCTTCAGTTATTTTTAATCACCATATAAAAATAGAACTATCTTTTGGGTTTTCAGATTTCTTATGCACAGGCAATACATGAATTTAAAATGATTTGTGAGCTACTTGTTTCTGAAGTGTTTTGGTAGTTTTATTAAGGACTAGTTAAATATTGTGCTTTTCAGAGCCTCAGAGAAGGGGAACTTGAGGGAGGGGGCGGGGATCTATCCTGGACTGGGCCAGCCTAAATAATACTGGCAGCCAAGATTCTGTTAGGATTTCTGTGCTTATAGTGTAGTAAACAAGTATCATTCAGGGGTGAAAAACAAAGAGCCGTTTTAACAATGTTGAGTACATTTGGCTGTTCTACAGCCTTTTTCTTTCCTCCCCAGAAAAGTTCTGTTTGCCTAACTCTCAAATTGTTGGTGTGGTACATTCCTTTAGGACCAATTAAAACATAACTTTGGGGTCAGTAATATAATTTGGCTGACTCTGGTTCAGTATTCTCTTAGGTCATTGTAGTCTCTCATGTACAGGAAATTAAAATGTTGAAGTTACCTAAATGAGTTCAGACCAATAAAATCACAGGAAATACAAGTTGAATTCCATTACTTCTGTAAGTTGCTTGCTATTAAAAAGGGTCAGGAGGTCAGGTTGTCCACCAGCTGGTGCACTGTTCTGACACTTTCCCCAGGAGGAAAACCTGTGTAAAGGTCAAGGTGGAGGCGTGGCTAGAAGACGTTGTTAAGGATGATGTTCATGTGTCTTTGCTCTCTCTACCTTATGCCGCAGTCTGGTTTAAAAACTTCTGTAAATGGTGGTATACCGTACGGGATAGTGTCATAACTAATTTGACAGTTTATTAATCAAAAATAACAATAAATCTCTAGCTTTT

Publications

PMID - Link Title
No publications available for this retrocopy