| Retrocopy Name | Ubqln1P1 |
|
| Species | Mus musculus | |
| Coordinates | chrX:152282571-152282909 UCSC | |
| Strand | + | |
| Parental Sequence | NM_026842.4 | |
| Parental seq. overlap | 272 bp | |
| Parental seq. overlap (%) | 7.4% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Ubqln1P1, located on chrX:152282571-152282909, is a retrocopy of the parental gene Ubqln1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Ubqln1 |
| Full Name | ubiquilin 1 |
| Also known as | 1110046H03Rik|1810030E05Rik|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1 |
| Coordinate | chr13:58323970-58363467 |
| Strand | - |
| Gene summary | Predicted to enable several functions, including identical protein binding activity; kinase binding activity; and polyubiquitin modification-dependent protein binding activity. Involved in negative regulation of toll-like receptor 3 signaling pathway. Located in autophagosome. Orthologous to human UBQLN1 (ubiquilin 1). [provided by Alliance of Genome Resources, Apr 2022] |
| >Ubqln1P1 |
| GGCTAGCATCTTCAGCACCCCAGGAATGCAGAGCCTGCTGCAGCAGATAACTGAGAATCCCCAGCTGATTCAGAATATGCTGTCTGCGCCCTACATGCGGAGCATGATGCAGTCGCTGAGCCAGAATCCAGATATGGCGGCCCAGATGATGCTGAGTAGCCCGCTGTTCACTTCGAATCCTCAGCTGCAGGAGCAGATGCGTCCACAGCTCCCGAATTTCCTGCAGCAGATGCAGAATCCAGAAACCATCGCGGCCATGTCAAACCCGAGAGCGATGCAAGCGCTAATGCAGATCCAGCAGGGGCTACAGACTCTAGCCACTGAAGCACCTGGCCTCAT |
| >NM_026842.4 |
| AGAGTGCCCTGCGCGGCGCCGGCGACGAGCGTGGGGGAGGTGCGGGAGGAGGAAGCGGCGGCGACGCGGAGAGTCCCCGCGTCCACACGGCAGCCGATCGCCCACCCGGGGCCTGCACCCGCAGCCCGCGTCCACGCACCCTCGGCGGCCCCGCAGCCTGTCACGCCTCGCGGACCCGGCCGCAGCCCGCAGTGTCGCGCTCGCCTGAGTCACCGCCATGGCCGAGAGCGCAGAGAGCGGCGGCCCACCGGGCGCGCAGGACAGTGCGGCCGACGGCGGCCCCGCAGAGCCCAAGATCATGAAGGTCACGGTGAAGACGCCTAAAGAGAAGGAGGAGTTTGCCGTGCCCGAGAACAGCTCGGTCCAGCAGttcAAAGAGGAAATCTCTAAACGTTTCAAATCTCATATTGACCAACTTGTGTTGATATTTGctggaaaaattttaaaagatcaagATACTCTGAGTCAGCATGGGATTCATGATGGACTTACGGTTCACCTTGTCATCAAAACACAGAACAGGCCGCAAGATAATTCAGCTCAGCAAACAAATGCCCCTGGAAGCACTGTGACCAGCTCACCAGCTCCCGATAGCAACCCCACGTCTGGTTCTGCTGCTAACAGCTCCTTTGGCGTAGGCGGACTTGGAGGACTTGCAGGTCTTAGCAGCTTGGGTTTAAACACCACCAACTTCTCTGAACTCCAGAGCCAAATGCAGCGGCAACTTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAATCCCTTTGTCCAGAGCATGCTCTCAAATCCTGACCTGATGCGGCAATTGATTATGGCCAATCCACAGATGCAACAGTTGATACAGAGAAATCCAGAGATTAGTCATATGCTTAATAATCCAGATATAATGAGACAAACACTGGAACTTGCGAGAAATCCAGCGATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTAGAAAGTATTCCTGGGGGCTATAATGCCTTACGGCGCATGTACACCGATATCCAGGAGCCTATGCTGAATGCTGCTCAAGAACAGtTTGGTGGTAATCCATTTGCGTCCTTAGTGAGCAGTTCGTCCTCAGCAGAAGGGACTCAGCCTTCTCGAACAGAAAATAGGGATCCGCTCCCCAACCCGTGGGCTCCGCAGACTTCCCAGAGCTCACCAGCCTCCGGTACCACTGGCAGCACCACTAACACCATGAGCACCTCTGGTGGCACTGCCACCAGTACCCCTGCTGGACAGAGCACCTCGGGCCCAAGCTTGGTGCCTGGCGCAGGAGctAGTATGTTCAACACCCCCGGAATGCAGAGCCTGCTGCAGCAGATAACTGAGAACCCACAGCTCATGCAGAACATGCTGTCCGCCCCATACATGAGGAGCATGCTGCAGTCCCTGAGCCAGAACCCCGACCTTGCTGCGCAGATGATGCTGAATAATCCCCTATTTGCTGGAAATCCTCAGCTTCAAGAACAAATGAGACAACAGCTCCCAACTTTCCTCCAACAAATGCAGAACCCCGACACGCTCTCAGCGATGTCGAATCCTAGAGCCATGCAGGCGCTGCTGCAGATCCAGCAGGGCTTGCAGACGCTGGCCACAGAAGCTCCTGGCCTCATCCCAGGGTTTACTcctggcttggcagcaggcaaTTCTGGAGGCTCTTCCGGAACCAATGCACCTAGCACTGCACCTAGTGAAGATACGAACCCCCAAGGGGGCACTGCTGAGCCAGGCCACCAGCAGTTTATCCAGCAGATGCTGCAGGCCCTTGCGGGGGTGAATCCTCAGCTGCAGAGTCCAGAAGTCAGATTTCAGCAACAACTGGAACAACTCAGTGCCATGGGATTCTTGAACCGTGAAGCAAACCTGCAAGCTCTGATAGCCACAGGGGGCGACATCAATGCAGCAATCGAAAGGTTGCTGGGCTCCCAGCCGTCATAGCAGCATCTCTCTATCCTgagaaaatgtaatttatttttgataacggctcttaaatctttaaaataacatGCTTTATTTCATTGGGATTCTGTGCTGTTATAAAGGAAACCAATAGGAAGTATCTGGAGGCAGAGTGCAGTACGACGGGCGGGTTTCTGTGTCTTTTTGGAACAGTGGGAATCAATGTTTCTTCTGGTTAAGGCTGCTGCATGCATCAAACACTTGGCatttattgtaatttttaaaaaaatatcacctTTTCTAATTGGGTGAACAAATTTTTGTCCTGCATCTGTCCAACTAACTTGCTTTTTAAACATAACCCTATGGTAGTAATTTATGTAGAATAAAGGCATTAAAAAGCAGATCATTTGCGCGCCCCATGATTTCTGGTACAATAGTGCTTGTTGTGACTTTGGCATGCACTTTGCAAATGATGCTGTAAGATTTATACTCCTgacaattttgtttatttgtatacaATACAAATTATTGCACATTTCTAGGCCATCTAAGCAAAATTTCTGTAACTAAAAAAGTACAATAAGGATTCCTAATTGTGTAGAATCTTACAGCATCTTTGATAAACATCTCAGCAGAAGTGCCATTTAGTCTGtgtggaaaataaagaaaaactaacTCTGGTTATCTCTTTAGGGACATTTAATTGTACAGACAACATAATGTAACAATATCTCAGCATTATATAATGGCTGTAAATTACCTTTCCTTGTGCCGACTGGAGGAGCACTGTATCATGCTCTGATGTGTTTGCTGGGGCGTCCTGCTCCCCGTAGGTGTCGTCTACGCAGCATTGAGTTTATTGAAATGTCGCTTTCACTGGAAGTGCGGATGTTTCGGTTCTAATTGCCATATAAAAGTAGAGCTGTCTCTTGGGTTTATCAGCTTTCTCATTCATAGGCAATACCTCGATTTTAAATGATTAGTGAGCCACTTGTTTCTCAAGTGTTTGGCTAGTTCTATTAAGAAATAGTTGAATGTCGTGCTGTTCGGAGCctcagaagggggtgggggaggggtgaaacAGAATCTATTCTGGATTGGGCCAGCCTGAACTAGGTAATACTGGCAATTAAGAttctgtgaagattctatgcatATAGTAGTGTCATTTGGGTGAAAAAGAGCCGTTTTAACAATTTTGAGTACGTTTGGCTATTCTAtagcctctttcttccttccccaaaGACGTTCTACTTGCCTAACTCTCAAACTGTTGGGGTGATACATTCCTTTGGGACCAGTTAAAATACAGCGTTAGGGTCGGTGACATATGTGACTGGCTCTGGTTCAGTATTCTCTTATCTTAGGTCACTGTAGTCTCTCTTGTATGGTTGCCCAAAATTATAATGTTAAATAATCTAAAGTGAGTTCAGACAAGTAAAATCAAGGGAAATAGAAGGTGAATTCTataacttctgtaagttgcttGATATTAAAAGGTTGAGAGGCAGGTTGGCCCCAGACTGTATACTTTTCTGACACTTTACCTGGGAAGAAAACATGTACAAAGGTCAGGGTGGAGGCATGACTGAGGAGGTCGGCAcagcctgcatgtgtgtgctctctctgccttACGCCTCAGTCTGTGGTTGGAAGACTTTGTACTGGTGAATGGCAATATGCAGGTGGGGCAGTGTCAAAAGCAGTTTGATTTATTAATCTCCAAATAACAATAAATCTCCAGCTTTTACACTTG |
| PMID - Link | Title |
|---|
