Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name Fbl_1P2
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Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Cricetulus griseus
Coordinates chr7:50816759-50817277  UCSC
Strand -
Parental Sequence XM_027430489.2
Parental seq. overlap 421 bp
Parental seq. overlap (%) 34.5%
Genomic Region Intergenic
Retrocopy Summary Fbl_1P2, located on chr7:50816759-50817277, is a retrocopy of the parental gene Fbl. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Fbl
Full Name N/A
Also known as -
Coordinate chr9:7921444-7931112
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FBLP2
Chimpanzee Pan troglodytes FBLP2
Bonobo Pan paniscus FBLP2
Gorilla Gorilla gorilla FBLP2
Orangutan Pongo abelii FBLP2
Gibbon Nomascus leucogenys FBLP1
Baboon Papio anubis FBLP2
Golden snub-nosed monkey Rhinopithecus roxellana FBLP2
Mouse lemur Microcebus murinus FBLP1
Mouse Mus musculus FblP2
Rat Rattus norvegicus FblP6
Rabbit Oryctolagus cuniculus FBLP1
Pig Sus scrofa FBLP2
Dolphin Tursiops truncatus FBLP2
Horse Equus caballus FBLP1
Panda Ailuropoda melanoleuca FBLP1
Cat Felis catus FBLP1
Velvety free-tailed bat Molossus molossus FBLP1
Greater horseshoe bat Rhinolophus ferrumequinum FBLP1
Egyptian rousette Rousettus aegyptiacus FBLP1
Sloth Choloepus didactylus FBLP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Fbl_1P2
TGGAATCCCTTCCGCTCCAAACTGGCCGCCGCCATCCTGGGCGGCGTGGACCAGATTCACATCAAGCCcaagtccaaagtcttgtacctggGCGCCGCCTCGGGAACCACTGTCTCTCACGTCTCTGACATCATCGGTCCCGATGGCCTGGTCTATGCGGTTGAATTTTCCCACCGCGCCGGCCGCGATCTGGTCAACGTTGCCAAGAAACGCACCAACATCATCCCGGTACTGGAAGATGCACGGCACCCGCTCAAGTACCGCATGCTTATCGGAATGGTGGACGTGATCTTCGCTGACGTGGCCCAGCCGGACCAGTCCCGCATCTTGGCGCTGAATGCCCACACTTTTCTGCGCAACGGAGGCCACTTTCTCATTTCCATCAAGGCCAACTGCATCGACTCCACAGCGTCTGCGGAGGCTGTGTTTGCTTCAGAGGTGAGGAAGCTGCAACAGGAGAACTTGAAGCCACAGGAGCAGCTAACTCTGGAGCCCTACGAGAGGGACCACGCTGTGGTC
>XM_027430489.2
GGCGGGGCCACGCGCTGCCGTCACGCGCCGCGCGTCGCCCCGCGCATGCGCTCCTCTCCACGTGCGAGCGCCGGAGACGCGTGGAGTCCGGGGACGCTGCTGATTGCGGGAGCCGCGCGGCCGGGAGGGACGCAGCGATGAAGCCAGGTTTCAGTCCCCGTGGGGGCGGCTTTGGTGGCAGAGGAGGCTTTGGTGACAGAGGCGGTAGAGGAGGAGGCCGAGGAGGCCGAGGAGGCTTTGGTGGGGGACGCGGAGGCTTTGGTGGTGGAGGTCGAGGTCGAGGTGGCGGTGGAGGTGGAGGCTTCAGGGGacgaggaggtggaggaggaggtggacGAGGCGGAGGCTTCCAGTCTGGAGGCGGCCGGGGTCGAGGTGGCGGCcggggaggaaaaagaggaaaccAGGCAGGGAAGAATGTGATGGTGGAACCCCACCGGCATGAAGGTGTCTTCATCTGTCGAGGAAAGGAGGACGCCCTTGTCACGAAGAATCTGGTCCCTGGAGAATCTGTGTATGGGGAGAAGAGAGTCTCTATTTCAGAGGGAGATGATAAAATTGAGTACCGAGCCTGGAACCCCTTCCGTTCCAAGCTGGCAGCAGCGATCCTGGGCGGTGTCGACCAGATCCACATCAAGCCTGGGGCCAAGGTTCTCTACCTTGGGGCAGCCTCAGGCACCACCGTCTCCCACGTCTCTGATATCGTCGGCCCGGATGGTCTGGTCTATGCAGTTGAGTTCTCCCACCGTTCTGGCCGTGACCTCATCAACTTGGCCAAGAAGAGGACCAACATTATTCCTGTGATTGAAGATGCTAGGCACCCACACAAATACCGCATGCTTATCGCGATGGTGGATGTGATCTTTGCGGATGTGGCACAGCCAGACCAAACCCGGATTGTAGCCCTGAATGCCCACACCTTCCTGCGGAATGGAGGACACTTTGTGATTTCCATTAAGGCCAACTGCATAGACTCCACAGCCTCTGCGGAAGCTGTGTTTGCCTCCGAAGTGAAGAAAATGCAGCAGGAGAACATGAAGCCCCAGGAGCAGTTGACGCTAGAGCCCTACGAGCGCGACCATGCTGTGGTTGTAGGTGTGTACAGGCCACCTCCTAAGGTGAAGAACTGAAACCCCGAGCTGTCTGGATTGGAAGAAATGTGTGTTGCTACTGTTGCAcgtgtagttttgttttgttttctattaaaataCTCATCTGTC

Publications

PMID - Link Title
No publications available for this retrocopy