Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name FBLP2
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr16:55351766-55352287  UCSC
Strand -
Parental Sequence XM_003355924.5
Parental seq. overlap 434 bp
Parental seq. overlap (%) 37.3%
Genomic Region Intergenic
Retrocopy Summary FBLP2, located on chr16:55351766-55352287, is a retrocopy of the parental gene FBL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FBL
Full Name fibrillarin
Also known as -
Coordinate chr6:48314782-48326433
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FBLP2
Chimpanzee Pan troglodytes FBLP2
Bonobo Pan paniscus FBLP2
Gorilla Gorilla gorilla FBLP2
Orangutan Pongo abelii FBLP2
Gibbon Nomascus leucogenys FBLP1
Green monkey Chlorocebus sabaeus FBLP2
Crab-eating macaque Macaca fascicularis FBLP2
Rhesus Macaca mulatta FBLP2
Baboon Papio anubis FBLP2
Golden snub-nosed monkey Rhinopithecus roxellana FBLP2
Marmoset Callithrix jacchus FBLP1
Mouse lemur Microcebus murinus FBLP1
Chinese hamster Cricetulus griseus Fbl_1P2
Rabbit Oryctolagus cuniculus FBLP1
Cow Bos taurus FBLP1
Sheep Ovis aries FBLP1
Dolphin Tursiops truncatus FBLP2
Horse Equus caballus FBLP1
Dog Canis familiaris FBLP1
Panda Ailuropoda melanoleuca FBLP1
Cat Felis catus FBLP1
Pale spear-nosed bat Phyllostomus discolor FBLP1
Velvety free-tailed bat Molossus molossus FBLP1
Greater mouse-eared bat Myotis myotis FBLP1
Greater horseshoe bat Rhinolophus ferrumequinum FBLP1
Egyptian rousette Rousettus aegyptiacus FBLP1
Sloth Choloepus didactylus FBLP1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FBLP2
TGGAACCCGTTCCGCTCCAAGCTGGCCGCGGCCATACTGGGCGGGGTCGACCAGATTCACATCAAGCCCAAGTCCAAAGTCCTGTACCTGGGTGCTGCCTCGGGGACCACGGTCTCCCACGTCTCCGACATCATCGGCCCGGATGGCCTGGTCTACGCGGTCGAGTTTTCCCACCGCGCCGGCCGCGATCTCGTCAATGTGGCCAAGAAGCGAACCAACATCATCCCGGTCCTTGAAGATGCCCGGCACCCACTCAAGTATCGCATGTTAATTGGGATGGTGGACGTGATCTTTGCTGACGTGGCCCAGCCAGACCAGTCCCGCATCGTGGCTCTGAATGCCCACACCTTCCTGCGCAATGGGGGCCACTTCCTCATTTCCATCAAAGCCAACTGCATCGACTCCACCGCATCTGCCGAGGCGGTGTTTGCCTCTGAAGTGAAGAAGTTGCAGCAGGAGAATTTAAAGCCTCAAGAGCAGCTGACCCTGGAGCCCTATGAGAGGGACCACGCTGTGGTCGTT
>XM_003355924.5
TGCTTgcgtcacgcgccgcacgtcgccgcgcgcctgcgcTCCTTTCCACGTGCGTAAACCCGGGACGCGTGGAGTCGAAAGAGCCTCAGATTACTGAGTAGCGAACCTCTGTGCTCGCTATGAAACCAGGTTTCAGCCCCCGAGGGGGCGGCTTCGGTGGCCGAGGGGGCTTTGGTGACCGTGGCGGTCGAGGCGGAGGCCGAGGGGGCTTCGGCGGAGGCCGAGGAGGCTTCGGCGGAGGCCGAGGCCGGGGCGGGGGCTTTCGGGGCCGAGGCCGAGGCGGCGGCGGCGGCGGAAGAGGTGGTGGGTTCCAGTCCGGGGGCAGCCGGGGTCGTGGTCGGGGAGGAAAAAAAGGAAACCAGTCGGGGAAGAATGTGATGGTGGAGCCCCATCGGCATGAGGGCGTCTTCATCTGCCGGGGAAAGGAAGATGCCCTGGTCACCAAGAATCTGGTCCCTGGAGAATCTGTTTATGGAGAGAAGAGAGTTTCGATTTCGGAGGGAGATGACAAAATCGAGTACCGTGCCTGGAACCCCTTCCGTTCTAAGCTGGCGGCAGCGATCCTGGGCGGTGTAGACCAGATCCACATCAAGCCGGGGGCCAAGGTGCTCTACCTGGGGGCTGCCTCAGGCACCACCGTCTCCCACGTCTCTGACATCGTGGGCCCGGACGGTCTGGTCTATGCAGTTGAGTTCTCCCACCGTTCCGGCCGTGACCTCATTAACCTGGCCAAGAAGAGGACCAACATCATTCCCGTCATCGAAGATGCTCGGCACCCGCACAAATACCGCATGCTCATCGCGATGGTGGATGTGATCTTTGCTGACGTGGCCCAGCCAGACCAGACTCGGATTGTAGCCCTGAATGCTCACACCTTCCTACGCAATGGAGGACACTTTGTGATCTCCATTAAGGCCAACTGCATTGACTCCACAGCCTCTGCTGAGGCCGTGTTTGCCTCTGAAGTGAAAAAGATGCAGCAGGAGAACATGAAGCCCCAGGAGCAGCTGACCCTAGAGCCGTACGAAAGAGACCACGCTGTGGTCGTGGGTGTGTACAGACCACCCCCCAAGGTGAAGAACTGAAGCCCAGTGCCATCTGGATCGCGAGAGACTGTGTTGCTACTGTTACACGCGTGTTTTTCTATTAAAAGACTTATGCGTCC

Publications

PMID - Link Title