Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Ldha_1P3
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Cricetulus griseus
Coordinates chr2:286583747-286583919  UCSC
Strand -
Parental Sequence NM_001244050.1_1
Parental seq. overlap 138 bp
Parental seq. overlap (%) 13.8%
Genomic Region Intergenic
Retrocopy Summary Ldha_1P3, located on chr2:286583747-286583919, is a retrocopy of the parental gene Ldha. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Ldha
Full Name N/A
Also known as -
Coordinate chr3:145001207-145009551
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens LDHAL6FP
Chimpanzee Pan troglodytes LDHAL6AP2
Bonobo Pan paniscus LDHAL6AP2
Orangutan Pongo abelii LDHAL6AP2
Gibbon Nomascus leucogenys LDHAL6AP1
Marmoset Callithrix jacchus LDHAL6AP4
Mouse lemur Microcebus murinus LDHAL6AP1
Rat Rattus norvegicus LdhcP1
Pig Sus scrofa LDHAP1
Cow Bos taurus LDHAP1
Sheep Ovis aries LDHAP1
Dolphin Tursiops truncatus LDHAP1
Dog Canis familiaris LDHAP1
Panda Ailuropoda melanoleuca LOC100474915P2
Cat Felis catus LDHAL6AP1
Greater horseshoe bat Rhinolophus ferrumequinum LDHAP2
Egyptian rousette Rousettus aegyptiacus LDHAP1
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Ldha_1P3
TGAAGGGCTACACGTCCTGGGCCATTGGCCTGTCTGTGGCTGATATTGCAGAGAGCATTCTGAAGAACCTCAGGAAAACGCATCCGGTTTCAACCAAAATCAAAGGTCTCTATGGAATAAAAGAAGAGGTGTTTCTCAGTGTGCCCTGTGTCCTGGGAGAGAATGGCATCTCA
>NM_001244050.1_1
ATGGCAACACTCAAGGACCAGCTGATTGTGAATCTACTTAAGGAAGAACAGACCCCCCAGAACAAGATTACGATTGTTGGGGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCCTCATGAAGGACTTAGCAGATGAGCTTGCCCTTGTTGATGTCATGGAAGACAAGctgaagggggaaatgatggaTCTCCAGCATGGCAGCCTTTTCCTCAGAACACCAAAAATTGTCTCTGGCAAAGACTATAGTGTGACAGCAAACTCCAAGCTGGTCATTGTCACAGCGGGGGCCCGTCAGCAAGAGGGAGAGAGCCGACTCAATCTGGTCCAGCGAAACGTGaacatcttcaagttcatcattCCCAACGTTGTGAAATACAGTCCAGACTGCAAGCTGCTTATTGTTTCAAACCCAgtggaTATCTTGACCTACGTGGCTTGGAAAATAAGTGGCTTTCCCAAAAACCGAGTTATTGGGAGTGGCTGCAATTTGGATTCTGCTCGATTCCGTTATCTGATGGGAGAAAGGTTGGGTGTTCACCCACTAAGCTGTCATGGATGGGTCCTAGGGGAGCATGGAGACTCCAGTGTGCCTGTGTGGAGTGGAGTGAATGTAGCTGGTGTCTCCCTGAAGAATCTGAATCCAGAGCTGGGCACTGATACCGACAAGGAGCAGTGGAATGAGGTTCACAAGCAGGTGGTTGACAGTGCCTATGAGGTGATCAAACTGAAGGGTTATACATCCTGGGCCATTGGTCTGTCTGTGGCTGACTTGGCCGAGAGCATAATGAAGAATCTTAGGCGGGTGCATCCCATTTCTACCATGATTAAGGGTCTCTATGGAATCAAGGATGATgtcttcctcagtgtcccttgtgTCCTGGGACAAAATGGAATCTCCGATGTTGTGAAGGTGACTCTAACTTCTGAAGAGGAGGCCCGCTTGAAGAAGAGTGCAGATACACTATGGGGGATCCAGAAAGAGCTGCAGTTCTGA

Publications

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