Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CCDC85AP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_3) and its respective parental gene (in scaffold_m13_p_7). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_3:170415922-170416155  UCSC
Strand -
Parental Sequence CCDC85A_x4
Parental seq. overlap 187 bp
Parental seq. overlap (%) 5.2%
Genomic Region Intragenic (CCDC85C)
Retrocopy Summary CCDC85AP1, located on scaffold_m13_p_3:170415922-170416155, is a retrocopy of the parental gene CCDC85A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCDC85A
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_7:35086162-35254867
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CCDC85AP1
Chimpanzee Pan troglodytes CCDC85AP1
Bonobo Pan paniscus CCDC85AP1
Gorilla Gorilla gorilla CCDC85AP1
Orangutan Pongo abelii CCDC85AP1
Gibbon Nomascus leucogenys CCDC85AP1
Rhesus Macaca mulatta CCDC85AP1
Golden snub-nosed monkey Rhinopithecus roxellana CCDC85AP1
Marmoset Callithrix jacchus CCDC85AP1
Mouse lemur Microcebus murinus CCDC85AP1
Mouse Mus musculus Ccdc85aP1
Chinese hamster Cricetulus griseus LOC113832379P1
Pig Sus scrofa CCDC85AP1
Dolphin Tursiops truncatus CCDC85AP1
Horse Equus caballus CCDC85AP1
Dog Canis familiaris CCDC85AP1
Cat Felis catus CCDC85AP1
Pale spear-nosed bat Phyllostomus discolor CCDC85AP1
Velvety free-tailed bat Molossus molossus CCDC85AP1
Greater mouse-eared bat Myotis myotis CCDC85AP1
Greater horseshoe bat Rhinolophus ferrumequinum CCDC85AP1
Sloth Choloepus didactylus CCDC85AP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Rat Rattus norvegicus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CCDC85AP1
GACGAGGAGCTGCTGCGTTGGAGCAAGGAGGAGCTGGCGCGGCGGCTGCGGCGCGCCGAGGGCGAGAAGGTGGGCCTCATGCTGGAGCACGGCGGCCTGATGCGCGACGTGAACCGGCGGCTGCAGCAGCACCTGCTGGAGATCCGCGGCCTCAAGGACGTGAACCAGCGGCTGCAAGACGATAACCAAGAGCTGCGCGAGCTCTGTTGCTTCCTCGACGACGACCGGCAGAAG
>CCDC85A_x4
gcggcggcggacgcagcggaggcggcaggaagatcgcaggcagccggccggccggccgcgcggagccctggggcagcagcggcagcggcggcgCTAGCGCAGCCCCCCGAGGTGCCGCGGAGTCCGGCGTGCCCTTGCACGGCTCGGAGAGGACGGAAACCGCGGGCTGCAGCTGGGCAAGGGCGTGGAAAGTGTGCGCGTGTGCGCGCGAGAGAGTGTGGGGGCGACAGTCTCGAATTAGGGCAGAGGAGCGGGCAGGGGAACCCAGTACGGCCCCCTCGGCGCCCCCGCCGGTCCCCTAGGTTCTCCCGCAGCGGCGCCAGCTCCCCAGCGCCCCTCACCATGGACTTGTGTGGAGTTGGGACGCGCCTCAGCAGCAGCGCGCGGGTGGTTGCCCGGCCCTGGGGCTGCGCGGGCGCGCGCGAAGGGATGGCGAGGTAGGATGGCCGCCCGGCGCGACCCTTGTCACCCCAACCCAGCGGCCCCTGGGCGGTGCCGCTGACTCGCCGGAGCGCACAAGGGTGTGGGGGGAGGCGGCCCCGCCGCGCCCGCGCCTTTGGGTGTCGCTTTGCCTCTTCCACCCACTTGCACCTGCCACCGCGCGGATATCATGTCGAAGGCGGCCGGAAGCTCAGCGGCGGCGGCGGAAAGTTGTCCCCCAGCCTCTGCTGGCCCATCCGCGGCCGCTGCGGTGGAGGACCTGTCCAAAGTATCAGACGAGGAGCTGCTGCAGTGGAGCAAGGAGGAGTTGATCCGCAGCCTGCGGCGCGCCGAAGCCGAGAAGGTGAGCGCAATGCTGGACCACAGCAACCTCATCCGTGAGGTCAACCGCCGCCTGCAGCTGCACCTCGGCGAGATCCGCGGGCTCAAGGATATCAACCAGAAACTCCAGGAGGACAACCAGGAACTGAGGGACCTCTGCTGTTTCCTGGACGACGACCGGCAGAAAGGCAAGAGGGTGTCCCGGGAGTGGCAGAGACTGGGCCGCTTCACGGCTGGGGTAATGCACAAGGAAGTGGCCTTATACCTGCAGAAGCTGAaggagctggaggtgaagcaggaggaggtggtgaaggagAACATGGAGCTCAAAGAGCTCTGCGTGCTGCTGGACGAGGAGAAAGGTGCCGGCTGCGCGGGCAGCCGCTGCTCCATTGACAGCCAGGCCAGCCTGTGTCAGCTCACCGCCTCCACGGCGCCGTACGTGCGGGATGTGGGCGACGGCAGCAGCACCTCCAGCACGGGCAGCACCGACAGCCCCGACCACCACAAGCACCATGCGAGCAGTGTTAGCCCCGAGCACTTGCAGAAGCCCCGGGCGGAGGGCAGCCCCGAGCACGCCAAGCACAGGAGCACCAGCCCAGAGCATCTACAGAAACCCAGGGCCTCCGGCACCCCAGATCACCCCAAAGCACTCAAAGGACCCAGCCCTGAGCACCACAAACCCTTGTGCAAGGGCAGCCCTGAACAGCAAAGGCACCCACACCCAGGGAGCAGCCCCGAAACACTGCCCAAGCACGTGCTGAGCGGGAGCCCGGAACACTTCCAGAAGCACAGGCCTGGGGGCAGCCCTGAGCACGCCAGGCACAGCGGAGGGAGCCCCGAGCATCTTCAGAAACATGCCCTCAGTGGGAGCCTGGAGCATCTACCCAGAGCAAGGGGCACTAGCCCAGAGCACCTCAAACAGCATTTTGGAGGGAGCCCTGATCACAAACACGTGggcggaggaggcggaggcagcggcggtggcagcAGGGAGGGTACCCTCCGAAGGCAGGCGCAAGAGGAAGTGTCACCCCATCACCGGAATGTCTACAGTGGCATGAACGGTGGGTTGTGTGGCGGAAACTTGGAGATGCTGCAGGTTCGTGTCCTGGAATTAGGCAGCATTTGTCTGGAAACCAGTACAAAGGACCAATGTGAGAAATACACTTTTAAACATGAGATCACCACTGCCAGAGAGATAAAAGAGTGGATTCCCCCAAACCTGAACTCATGGAGTGATTGTACATTGCACATATTTTCCCTTTAAAACCTTTAGTATAACTAAAGCTGTATTTTATGTCTCTCGCTTTGATGTTCACAACCCTCAATTTCAAACAAGGTAGCTTTGAAAAGTCACCATTTTGGTAGCAATATTTTCATTAGAACTAAAATGTTTTGACTCCTGAGATCTAAGATTATAATTAGGAAACATGCATGATTGGAAGAGCCCAGTAGAACCTGAGTGGTTTGATGGTTGGCTCATTACATTTAATGGGGGGCGGAGGGGTTCTACCATATTGTACTAAAGAAGGGATGTCTTCCAGCTTTCCAAGTTTGAGAGTCGAGAACCTATTTCGTATAATTTTAGTCACCAAAATACTAGTTCCTGATTCATAATTTAGATACAAGATTAGATTAGGTTTCTGGGATTGTTTTTTGATTTTTGAGGTGCTAAAATACCACATAAATTTTTCTTACCAGCTGGTAGCAAGACTATGTAGAGTGTTTATCAGAGAGTACTGTTTATTTCAAATGATCAAAATATATCTTTTAATCTTGATGTACTACTACTGTTCATGAAGACACATTGTAGGGACATATCAACCTACATATTCATTCAGTGTATCCATTGATGTTAATATTAACAACTTCAATTAAAGAACAAGCAAACTAATTTTTCTAAGTGTTTTTGGCAGTGAGATGTCAATTTCTACAATTTAGTTTCTAGACATGCTGTTATATTTAATAAACTTCATGTGAACTTTAAAATACTGTACTGCACTTATGAAAAAAGCTTTGTCTACAGCAGCTATCTAATGTTTTATGAAACTGACGCATGTCATTCATTATTAAGGCTAAAAGCTTTGTTCAGATTGCTTGAGGTTTGAAAAAGAGGTGTGCTAGCTTTGCTTAGTTTCTTATTTTTGGTATATATATATATATTAGACTGTGTGTACTGGAAATGCTATGATAGGTATTTTGTGTTTATTCAAATGCAATGATAGTTTCTTGTATGGATGTGCAAGAGGCTTGTGACAGAATGCTAAATTTTTACTGTAGTTTAAAATTATAAAAGTAGGAATGTAACAATTTCCAGTTTTCTTCTAAATTACTCAAGTTGGATTCATTTCAGTTATTCTGTTGTTTTTAAATGGCTCATTACACAATGTATTAATTGCCATTTGTGAAGGAATTTTATTATACTTCTTAAAAGGTTACTGTGATGGAAAGTCATCCCTCTGCTTTCTAAAATTATGAGTTAATTTACTAAAAAGAATGATCTCTCTAATTATCATAATTGGGTTACCATTTAAGTCTTTCTTTTAAAATGCTATATTTTTAAAACACTACTACTCTGTAAAAGAATATTGCCTGCTATATTTATACCTTCTCTTTTAGAAAAGCTTTCATCCTTAAATTGTTGTATTCCTACACTCTGAAGACATTTAAAGTTAAGTTTTTGTGCCTGCAGCAGCACATACAAGAAATACTGGTCTTTTGACAAAATACTTGTGTAAATTTTGATACTGTATTAAAACTATTTTTTTAAAGTTCTGCATAAAATTAAGTATCAAGTATATGTGTTCATCTTAGCAATGGTAATAAATTATTTAATCTCA

Publications

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