| Retrocopy Name | Ccdc85aP1 |
|
| Species | Mus musculus | |
| Coordinates | chr12:108241087-108241325 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001166661.2 | |
| Parental seq. overlap | 191 bp | |
| Parental seq. overlap (%) | 3.6% | |
| Genomic Region |
Intragenic (Ccdc85c) |
|
| Retrocopy Summary | Ccdc85aP1, located on chr12:108241087-108241325, is a retrocopy of the parental gene Ccdc85a. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Ccdc85a |
| Full Name | coiled-coil domain containing 85A |
| Also known as | - |
| Coordinate | chr11:28335684-28537234 |
| Strand | - |
| Gene summary | Predicted to be located in adherens junction. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human CCDC85A (coiled-coil domain containing 85A). [provided by Alliance of Genome Resources, Apr 2022] |
| >Ccdc85aP1 |
| CGGACGAGGAACTGCTGCGCTGGAGCAAGGAGGAGCTGGCGCGGCGGCTGCGGCGCGCCGAGGGCGAGAAGGTGGGCCTCATGCTGGAGCACGGCGGCCTGATGCGCGACGTGAACCGGCGGCTGCAGCAGCACCTGCTGGAGATCCGCGGCCTCAAGGACGTGAACCAGCGGCTGCAGGACGACAATCAGGAGCTGCGTGAGCTCTGCTGTTTCCTGGACGACGACCGGCAGAAAGGG |
| >NM_001166661.2 |
| CCAGCCCCACCCGCATCCCTGTGCTCTGGGAACCGCGCTCCCAATCGTCCCTAGCAGCAGAGCACCAGGAGCTCAGGGTCCGGTTGGGCAGCTGAGTGCCATTCGGGTTTGGCCTTTGCAGAAGGTGTTGCGGAATGCGGGCGCCCCGGGAGCCAGCTTCCTCCCTGCTGCTGCTCCCCAATCCCCGCCCATCCTTTTCTGGGCTCTGAAAACCCAAGGCTTCCCAGAACAGTTTAGGATCAGCCATAGGACTACAGCTAGCCAGCTGCGCGGAGCTTTCTGGGAAGGACAGCAGCTCGCCCTAGGGTAGCAGCGGAGCCTCGGGGTTTAGCAAGCGAGAGGGAAGGGCGTGTGCatcgtgtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagaccgTGAGGGATGGCTGTCTGGATCTGAGcgaaggagagggcaggggattGAGACAGATCTCTCTTGGTGTCCCCGCCCGCTCCTGCTCCCCGGCGCCCTTCACCATGGAATTGCGCCGAGTTGGGACGGACCTATGCAGCCACCAGGAACTGGCTGTCGGGCCCCGAGATTCGGCAGGTACTCGCGCTTGGATGGCGAGGTAGGATGGCCACGCAGCGCGATTCCTGCCGTCCCCACGCAGCGGTCCCCCGGAGGTACCTCTGACTCTGGAAGCGTACAGGGGTGTGGGAGGAGGCCACCCAGCCGCGCCTGCACCTTCGCCAGTCGTTTCGCCTCTACCCACTCGCACCTGCCGCTGCGCGGATACCATGTCTAAGGCGGCTGGAGGCTCAGCGCCAGCGGCGGAAAGTTGTCCCTCGGCTCCGGCCGGTGCGTCGACACCCACGGGCGTGGATGATCTATCTAAAGTGACGGACGAAGAGCTGCTGCAGTGGAGCAAGGAGGAGCTGATCCGCAGCCTGCGGCGAGCCGAAGCCGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCTCGGCGAGATCCGAGGGCTCAAGGATATTAACCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGACCTATGCTGTTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTACACAGCTGGAGTGATGCACAAGGAAGTGGCCTTATACTTGCAGAAGCTGAAGGAGCTGGAGGTGAAGCAGGAGGAGGTGGTGAAGGAGAACATGGAACTTAAGGAACTCTGCATGTTGCTGGACGAGGAGAAGGGCGTAGGATGTGCCGGCAGCCGCTGCTCCATCGATAGCCAGGCCAGCCTGTGCCAGCTGGTTGCCTCCGCTACCCCCTATGTGCGAGATGTGGGTGATGGCAGCAGCACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAGCACTAGCCCTGAACATCTACACAAACCCAGGGCTTCTGGGACCCCAGATCACTCCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAGCACGTGTTGAGTGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAACACACCAGGCACAGTGGAGGGAGCCCTGAGCATCTTCAGAAACATGCCCTTGGTGGGAGCCTGGAGCACCTCCCCAGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAACATTACGGGGCCAGCCCTGATCACAAACATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCAGGGAAGGCACCCTCCGGCGGCCTGCTCAAGAGGATTCATCATCCCATCACCGGAATGTCTACAGCGGCATGAATGaatcaACCTTGTCCTATGTTAGGCAGCTGGAGGCCAGAGTCAGACAGCTGGAAGAAGAAAATCGCATGCTGCCCCAGgttgtgTGGAGGAAACTTGGAGATGCTGCAGGCTCCTGTCCTGGAATTAGGCAACATTTGTCAGGAAACCAGTACAAAGGGCCTATGTGAAAAGCACTGCCTTCAAACATGACATCATCACTACTAGAGACagcagaaaaagaagacaaagaagaaattcagTTTCTACAAAATAAAACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATCCTTTAGTGTACCTTCTCCCATACAGCTAATATGTGCTATAAGTCTCAACTTTAGTGTTCATAGCAGTCTCAAGGTAGCTTTGGAAAATCGTTTTAGTATTAATGAAAGTATTAATTTCATGAAAGCTGAAATGTTTTTGACTCTTCACAACCATGATTGACATATTGGGTAGTCTGCATGGTTGGATGAGTCCAGTAGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACTGTGTGGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTCATATATATAGCAGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATaacatttggttttctcatttgaATTCTGAGGTGctaaaaaataacacaaaatattTTACCAGCTAGAAAGGTaggaggaatttttaaaaatgcttagcAGAGagtatcatttattttcatttggtcaagataaataatttaattttgatgAGTTGTTTATAAAGGCATGTCTTTGGACCATACAACCCTTCATATATATTCAACTTACCAATGTCAActaacaaggaaacaaacataaTTAATTTTTCTAGGAGTTTCAAGCTGTGACATTGTCTGTTTCTACAACTTAGTTTTTAGACATGCTGTATACTTAATAAACTTTATGTAAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCACTGCAGCTATCTAATGTCTTAGGAGGCTAACGCATGTCCATTATTGAGGCTAAATACTCTTTTCAGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTGTGTACTGGAAATGCTATGATATTTTGTGTTTATCTAAATTTAATGATCGTTTCTTGTATGAATGTTCAAGAGGCCTGTGACAGAATGCTGTTTTTACCATAGTTTAAGATTATAAAGTAGGGATGCAACAATTCCTGGATAGCTTCTAAACTTATGATTTGATTCACAGTCAATATTCTTTGTTGTCTATAAATGAAAtggttttattatataatttattaatgaaCATTGGCAGGAGAATGAGAAGAAATTTGCCATAGTAAAAATACCTAATTGCTACTTCCAAAACCGCCCTCTATCTTCTGAAAATATTTATGGGTTCATTTAACATAGAATCATCTTTCTAATTATCATTACTGAGTTATAATTTAAGACTCTTCCTTTAAACTGCTATAGTTTTAGTGTCTAAGAGaaaattgttacacacacacacacacatactttctcaCACAGAAACATCCTTCAATTGTTGTATTCCTACAGTCTGAAGATATTTAAACAAATTTTTGTGCTTGCAGTAGATCCTGCAGTAGCGATACAAAGGACATTGGTCTTTTGACAAAATACTTGTGCAAATTTTGATACTGTatcaaaactatttttttaaagttccacataaAATTGAGTATTAAGTATATGTGTTCATCTTAGCAAcagtaataaattatttaatctcacagtatttttgtctgttttgaaatGTTCTTCCTTAACAGAATAAATTTCTAATAGTCACTGAATATCATCCCTTGTGTGATTATGATACTAGTAGTAATATAGATCAAAATAAAAGACATGCaaaaggcatattaaaaatatgcTTATGAGGGACTTAATAGTCAGAGACATCTTAATTTATACCATTTTCTATTATAGCCTCCAGGAGTATGATTTAGGAACAGTTgaattttcttaataaaattctcagttCTTAAACTTATACTTGGAATGGAAATACTAAAATAGTTTTGAAACAATCagcattattttatgtatttgtgggAAATTTTATAGTAGCACATAAGGCTTCTTAGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCAGTTTTAAGTAATGGCGTACATTGATCCCATGAGTAATACTGTTTTCCTATGGGATCATTTCAATAAATTTACTATCTAATCATTCCTGCAACAAAGCCTAATTTACATGTCTTGACAGTACTTTTAGCTGCCATGATGCTGATAGACTGTCACAATCTAACTTTTAATGAATGCCTTTCTCATTTTTAGCACATGCTTAAAGCTCTGTAGGAATTTGTCAGCTCATGTGACATTCCAAGAGTTTAATTGGTATGATTTCCCCTTAGTTCAGTGAATATTTAGTGATGCCTACCACTGCCATACAATTTTGGGCTAGCCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCCTTTATTTTTGACACCTAAGATAAGATTGTCTCAGACATCTGTTTCACTTGATCTGAAACAAACTACCCCCAATCCTTCCATTAATTCTCAGACTCTATATGATGCAGTCAATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGGCATTTATTCCTATGAAAGTACCTTTAAGCTAGCTTATCAAAGTAGATCACCAACAAGATCAAAACAACTATGAGGAAATCACATGTTGATTTCTAAAGAATCAAAACTTCTCCACCATATCTAAGGCAGTACCTTATTCTGAACAATAAGTAACTGATGCACATGGTCTCCTTTGTCTACAAAACAGCAATTTCTTATGGCTCATCTTCAGATGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAGAGAAGAATCATCATATTGGCCAAATCACAATGATATACTATCACATTCTGCTTTTATATATCACCCAACTTACAAGCCTTACATTTTATGGTAACTGCCTTATATTAACAAGAGACTCTGTTTTGattcttatatatgaatattattattttaagctaaAAATCTCCACTACTATTTAATTCTAAATTGTAGATGTCTCTAAAAATACTTATGATAATAAATATCTTATTTCACAAAAGCAG 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| PMID - Link | Title |
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