| Retrocopy Name | CCDC85AP1 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chr14:99603669-99603904 UCSC | |
| Coordinates (T2T) | chr14:93835112-93835347 UCSC | |
| Coordinates (hg19) | chr14:100070006-100070241 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001348515.1 | |
| Parental seq. overlap | 195 bp | |
| Parental seq. overlap (%) | 5.2% | |
| Genomic Region |
Intragenic (CCDC85C) |
|
| Retrocopy Summary | CCDC85AP1, located on chr14:99603669-99603904, is a retrocopy of the parental gene CCDC85A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CCDC85A |
| Full Name | coiled-coil domain containing 85A |
| Also known as | - |
| Coordinate | chr2:56183990-56386174 |
| Strand | + |
| Gene summary | Located in adherens junction. [provided by Alliance of Genome Resources, Apr 2022] |
| >CCDC85AP1 |
| CGGACGAGGAGCTGCTGCGCTGGAGCAAGGAGGAGCTGGCGCGGCGGCTGCGGCGCGCCGAGGGCGAGAAGGTGGGCCTCATGCTGGAGCACGGCGGCCTGATGCGCGACGTGAACCGGCGGCTGCAGCAGCACCTGCTGGAGATCCGCGGCCTCAAGGACGTGAACCAGCGGCTGCAGGACGACAACCAGGAGCTGCGCGAGCTCTGCTGCTTCCTCGACGACGACCGGCAGAAG |
| >NM_001348515.1 |
| GCGCCGCGGTGCCCGGCGCGCCCTCCAAGCTAGGAGAGGGGAGAAGCCGGGGGCTGCAGCTGGGCAAGGGGGAGGAAAGTGCGTGTGCGTGCACGCCTGTGTGCAGGGCAGAGAGTGCGGGGGGCGACAGTCTCGGCTTAGGGCGGAGGAGAGGGCAGGGGAACGGCGGTGCAGCTCCCCCGCTGTCCCCGAGGATTTCCCGCGGCAGCCCCGGGCTCCCCAGTGCCCCTCACCATGGACTTGCGCGGAGTTGGGACGGGCCTCGGCAGCAGCAAGCGGCTGGCTGCCGGGCCCTGGGGGAGCGCGGGCGCGCGCGCGGGGATGGCGAGGTAGGATGGCCACCCAGCGCGACCCCCGCCGCCCCAACCCAGCGGCCCCTGGGCGGTGCCGCTGACTCGCCGGAGCGCACAGGGGTGTGGGCGGAGGCGGCCTCGCCGCGCCCGCGCCTTCGGGAGTCGCCTCGCCTCTTCCACCCACTTGCACCTGCCACCCCGCGGATACCATGTCGAAggcggccggaggcgcggcggcggctgcggcggcggcggAAAGTTGTTCCCCAGCCCCGGCCGGCTCGTCCGCGGCCCCGCCCGCGCCGGTGGAGGACCTGTCCAAAGTGTCGGACGAGGAGCTGCTGCAGTGGAGCAAGGAGGAGCTGATCCGCAGCCTGCGGCGCGCCGAGGCGGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATCCGCGAGGTGAACCGCCGCCTGCAGCTGCACCTCGGCGAGATCCGCGGCCTCAAGGATATCAACCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGACCTCTGCTGTTTCCTGGATGATGACCGGCAGAAAGGCAAGAGGGTGTCTCGGGAGTGGCAGAGACTGGGTCGCTACACTGCCGGGGTGATGCACAAGGAAGTGGCCTTATACCTGCAGAAGCTGAAAGACCTGGAGGTGAAGCAGGAGGAAGTGGTGAAGGAGAACATGGAGCTCAAGGAGCTCTGTGTGCTACTAGATGAGGAGAAGGGTGCAGGCTGCGCAGGCAGCCGCTGCTCCATCGACAGCCAGGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACGTGCGGGATGTGGGTGACGGCAGCAGCACCTCCAGCACTGGCAGCACTGACAGCCCGGACCACCACAAGCACCACGCGAGCAGTGGCAGCCCGGAGCACCTGCAGAAGCCCCGGAGCGAGGGCAGCCCGGAGCACTCCAAGCACAGGAGCGCCAGCCCCGAGCATCCACAGAAACCCAGAGCCTGTGGAACCCCAGATCGCCCCAAAGCACTCAAAGGACCTAGCCCGGAGCACCACAAACCCTTGTGCAAGGGCAGCCCCGAACAGCAAAGGCACCCGCATCCAGGGAGCAGCCCCGAAACGCTGCCCAAGCACGTGCTGAGTGGGAGCCCGGAACACTTCCAGAAGCACCGGTCAGGGAGCAGCCCTGAACACGCCAGGCACAGTGGAGGGAGCCCGGAGCATCTTCAGAAACACGCTCTTGGGGGGAGCCTAGAGCATCTCCCCAGAGCCAGGGGCACCAGCCCGGAGCACCTCAAACAACATTATGGAGGGAGCCCTGATCACAAACACggaggaggcagtggaggaagtggaggcagcggcggaggcagcagggaggGCACCCTCAGACGGCAGGCACAGGAGGACGGGTCACCCCATCACCGGAATGTCTACAGTGGCATGAACGAATCAACCTTGTCCTATGTTAGGCAGCTGGAGGCAAGAGTAAGACAGCTGGAGGAAGAAAATCGCATGCTGCCCCAGGTTGTGTGGAGGAAACTTGGAGATGCTGCAGGTTCGTGTCCTGGAATTAGGCAACATTTGTCAGGAAACCAGTACAAAGGACCAATGTGAGATGCACTCTTTTTCAAACAGGAGATCACCACTGCCAGAAAGTGATAGAAGACAAGAAGAAAAAGGAAAGAGTGGGTTTCCACAAACCTGGACTCATGGAATAACATGGAGTGATTGTACATTGCACATATCTCCCCTCTAAAACCTGTAGTACAACTTCTCCCCTCAAGCTGATATTCTGTGTCTCTCACCTCAATGTCCACAACAGTCAATCTCAAACAAGGTAGCTTTGAACATCTCAAACAGAGTAGCTTTGAAAATCAACATTTTGGTACCAGTGTTTTCATTAGAAATAAGTGTTTTTAACTCCCCAGATATAATATTGTAATTGGGAAACCTGAATAGTTTTAAGAGTCCAGTGGAGCCTCAGTGTTTTGAATAGAGATGACTCATTACACATAATGGTAGGAGTTTTCTACCATATCATATTGAAGATATGAAGAGGTATTTTCCAGCTTCCCAAGTTTGAGAGTTGGGCATTTACCTCTTACACTTCAGTCAACAAACAAACTAGTAATTCCTAATGCATAATTAATTTGGATGCAAGATAAGATTAAGTTTCTGGAGTTTTGTTTTGACTTCTGAGGTGCTAAAAAATACCATGTAAATTCTCCCTACCAGCTAGAAGGGTAGCAAGACGTTGTAGAGTGCTTATCAGAGAGTACCATTTACTTCAATTGATCAATATAAATATATCTTTTTTTTTCATCTTAATGAGTTTCTCATAAAGACACATCTTGGGGCATACCAACCTTCATATTCATTCAGTGTATCCATTGGTGTTAATATTAACAATTTCAACTAAAAACAACAAACATAATTTTTCTAAGTGTTTCGAGCTGTGAGATGTCAATTTCTACAATTTAGTTTCTAGACATGCTGTATATTTAATAAACTTTATGTAAACTTTAAAATATTGCACTGCATTTATGAAAAAAGCTTTCTTTGCCTACTGCAGCTATCTAACATTTTATGAAACTGACGCATGTCCTTCATTATTGAGGCTAAAAGCTCTTGTTCAGATTGCTTGAGGTTTGAAAAAGAGGTGTGCTAGCTTTGCTTAGTTTATTTCTTATTTTTGGTATACATATACATATATATAACATTAGAATGTGTGTACTGGAAATGCTATGATAGGTATTTTGTGTTAATCCAAATGCAATGATAGTTTCTTGTATGAATGTGCAAGAGGCCTGTGACCGAATGCTACGTTTTTATGGTAGTTTAAGATTATAAAAGTAGAAATGCAACAATTCCCAGTTTTTGGATAGGTTCTAAATTTCTGAGATTTGATTCATGGCAGATATTCTCTGTTGTTGTTGTTTTAGATGGGCTCATTACATAACGAGTTAATTGTCACTAGTAGGAGACTGTGAAGGAATTTTGTTATACTTTCAAAAATGTTACTGTGATGAAAAATCATCTATTTTCAGAAAATATTTATGAATTAATTTACTATAGAATTATCTCTCTAATTATCATAATTGGGTTACAATTTAAGCTCCCCTTTTAAATGTTATATTTTAAAATGTTATTACTCTATAAAAGAAAATTGCTTGCTATATTTACACCTTCTTTCCTAGGAAAGCTTTCATCCTTAAATTGTTGTATTCCTACCCTCTGAAGACATTTAAAATAAGCTTTTGTGCCTGCAGCAGAGCCTGCAGAAGCTAATACAAGGGACACTGGTCTTTTGACAAAATAAACTTGTGTAAATTTTGATACTGTATTAAAACTATTTTTTTAAAGTTCTGCATAAAATTGAGTATTAAGTATATGTGTTCATCTTAGCAATGGTAATAAATTATTTAATCTCACA |
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