Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GSPT1P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chrX:140420026-140421735  UCSC
Strand +
Parental Sequence XM_012784486.2
Parental seq. overlap 1509 bp
Parental seq. overlap (%) 58.9%
Genomic Region Intergenic
Retrocopy Summary GSPT1P1, located on chrX:140420026-140421735, is a retrocopy of the parental gene GSPT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GSPT1
Full Name N/A
Also known as -
Coordinate chr17:10407225-10459870
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus LOC117976208P1
Marmoset Callithrix jacchus GSPT1P2
Mouse Mus musculus Gspt1P2
Rat Rattus norvegicus Gspt1P1
Chinese hamster Cricetulus griseus Gspt1_1P1
Pig Sus scrofa GSPT1P1
Cow Bos taurus GSPT1P2
Sheep Ovis aries GSPT1P2
Dolphin Tursiops truncatus GSPT1P1
Horse Equus caballus GSPT1P2
Dog Canis familiaris GSPT1P3
Panda Ailuropoda melanoleuca GSPT1P1
Cat Felis catus GSPT1P1
Pale spear-nosed bat Phyllostomus discolor GSPT1P3
Velvety free-tailed bat Molossus molossus GSPT1P1
Greater mouse-eared bat Myotis myotis GSPT1P2
Greater horseshoe bat Rhinolophus ferrumequinum GSPT1P1
Egyptian rousette Rousettus aegyptiacus GSPT1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GSPT1P1
ATGTGAAGGTTCCAATTCAGCGGTTACCATGGAACTTTCAGAACCCATTGTAGAAAATGGAGAGGTGGAAATGGCCCTAGAAGAATCATGGGAGCACAGTAAAGAAGTAAGTGAAGCCGAACCTGGGGGTGGTTCCTTGGGAGACTCAGGGACCCCAGAAGAAAGTGGCCAGGTCTGTGCTCATACCCTCAGGTGCTCCTAAGAAAGAACACGTAAATGTGGTATTCATTGGGCATGTAGATGCTGGTAAGTCAACCATTGGAGGACAGATAATGTTTTTGACGGGAATGGTTGACAAAAGGACACTTGAGAAATATGAAAGAGAAGCtaaggagaaaaacagagaaacttGGTATTTATCCTGGGCCCTAGATACAAATCAGGAAGAACGAGACAAGGGTAAAACAGTAGAAGTGGGTCGTGCctattttgaaacagaaaagaagcatTTCACAATTTTAGATGCTCCTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCGTCTCAAGCAGATTTGGCTGTGCTGGTAATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGTGGACAGACAAGAGAACATGCGATGTTGGCCAAAACAGCAGGGGTGAAACATTTAATTGTGCTCATTAATAAGATGGATGATCCCACAGTAAATTGGAGCAGTGAGAGATATGAAGAATGTAAAGATAAACTGGTGCCCTTTTTGAAAAAAGTTGGCTTCAGTCCAAAAAAGGACATTCACTTTATGCCCTGCTCAGGACTGACAGGGGCAAATATTAAGGAGCAATCAGAGTTCTGCCCTTGGTACACTGGATTACCATTCATTCCATATTTGGATAATTTGCCAAACTTCAATAGATCAATTGATGGACCAATTAGGCTGCCAATTGTGGATAAGTACAAGGATATGGGCACTGTGGTCCTGGGAAAGCTGGAATCAGGATCCATTTTTAAAGGCCAGCAGCTTGTGATGATGCCAAATAAGCACAATGTGGAAGTTCTTGGAATACTTTCTGATGATACTGAAACTGACTTTGTGGCCCCAGGTGAAAACCTCAAAATCAGATTGAAGGGAATTGAAGAAGAAGAGATTCTCCCAGGATTCATACTTTGTGATCCTAGTAATCTTTGCCATTCGGGACGCACGTTTGATGTTCAGATAGTGATTATTGAGCACAAATCCATCATCTGCCCAGGTTATAATGCGGTGCTTCATATTCATACTTGTATTGAGGAAGTTGAGATAACAGCCTTAATCTCCTTGGTAGACAAAAAGTCAGGAGAAAAAAGTAAGACACGACCCCGCTTCGTGAAACAAGATCAAGTCTGCATTGCCCGTCTAAGGACAGCAGGAACTATCTGCCTCGAGACATTCAAAGATTTTCCTCAGATGGGTCGCTTTACTTTAAGAGATGAGGGTAAGACCATTGCGATTGGGAAAGTTCTGAAACTGGTCCCAGAGAAGGACTAAGTAATTTTCTTGATGCCTTTGCACAATACTGTGAGGATAATTCACTGCAAAAGTTCACCACCTCTTATTTACTGCCCATTGACAgacttttcttcatattttgcaAAGAGAAATTCACAGCAAAAATTCATGTTTTGTCAGCTTTCTCATGTTGAGATCTCAGTTATGTCACTATTGAATTT
>XM_012784486.2
GGGTTGGGTGGGAGGAGATCCGCTGGCACACACGAGGAGGAGGGTTGAGCTGCCGCCGCCGCTGTCGTGAGTGCGGAGTCGGGACTGTAGCTGCCGCCGCGGCGACGCCGGGGATCGTGTCGTTAGCGCCCGGCCCTTCTGCCTCGCCGCCTTTGCCGGGTCAGCGCGGCCTGCTCCTCCCCGGTCGGTCGCCCCCACCTCCATTTCCCGCCCTCTCTTCACCACACACACGGCCCCCCCGATCATGGATCCGGGtagtggcggcggcggcggtggcggcggtggCGACGggagcagcagcggcagcagcagcagcgagtCGGCGCCCGACTGCTGGGACCAGGCGGACATGGAAGCCCCCGGGCCGGGCCCGTGTGGCGGCGGCGGTGGCCCCATGGCGGCGGCGGGGGCCGAGGCCCAGCGTGAGCACCTCAGTGCGGCCTTCAGCCGGCAACTCAACGTCAACGCCAAGCCCTTCGTGCCCAACGTCCACGCCGCCGAGTTCGTGCCGTCTTTCCTCCGTGGTCCGGCCCAGGCTCCGCCACCTTCTGCTGGCGCCGCCACCAACAACCACGGAGCCGGCAGCGGCGCGGGAGGCCCTTCGGCACCTGTGGAATCCTCTCAAGAGGAACATTCGTTGTGTGAAGGTTCAAATTCAGCCGTTAGCATGGAACTTTCAGAACCTGTTGTAGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGgagcacaaagaagaaataagtgaagTAGAGCCTGGGGGTGGTTCCTTGGGAGATGGAAGGCCACCAGAGGAAAGTGCCCATGAAatgatggaggaggaagaggaaatacCAAAACCTAAATCTGTGGTTGCACCACCAGGTGCTCCTAAAAAAGAACATGTAAATGTAGTATTCATTGGGCATGTAGATGCTGGCAAGTCAACCATTGGAGGACAAATAATGTATTTGACTGGAATGGTTGACAAAAGGACACTTGAAAAGTATGAAAgagaagctaaagaaaaaaacagagaaacttggtaCTTGTCTTGGGCCTTAGATACAAATCAGGAAGAACGAGACAAGGGTAAAACAGTAGAAGTGGGTCGTGCCTATTTTGAAACCGAAAAGAAGCATTTCACAATTCTAGATGCCCCCGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCCTCTCAAGCTGATTTGGCTGTGCTGGTAATCTCAGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTAAAACACTTAATTGTGCTCATTAATAAGATGGATGATCCAACAGTAAATTGGAGCAATGAGAGataTGAAGAATGTAAAGAGAAACTGGTgccatttttgaaaaaagttgGCTTCAATCCCAAAAAGGACATTCACTTTATGCCCTGCTCAGGACTGACTGGAGCAAATCTCAAAGAGCAATCAGAGTTCTGCCCTTGGTACATCGGATTACCATTTATTCCATATCTGGATAATTTGCCAAACTTCAATAGATCAGTTGATGGACCAATCAGGCTGCCAATTGTGGATAAGTACAAGGACATGGGCACAGTGGTCCTGGGAAAGCTGGAATCAGGATCTATTTGTAAAGGCCAGCAGCTCGTGATGATGCCAAACAAGCACAACGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAGACTGATACTGTAGCCCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAAGAGGAGATTCTTCCTGGATTCATACTTTGTGATATTAATAATCTTTGTCATTCTGGACGTACATTTGATGCCCAGaTAGTGATTATAGAGCACAAATCCATCATCTGCCCAGGGTATAATGCGGTGCTGCATATTCACACCTGTATTGAGGAAGTGGAAATAACAGCCTTAATCTGCTTGGTAGAcaaaaaatcaggagaaaaaagtaAGACTCGACCCCGTTTTGTGAAGCAAGATCAAGTATGCATTGCTCGTTTAAGGACAGCAGGGACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGTCGTTTTACCTTAAGAGATGAGggtAAGACCATTGCAATTGGAAAAGTTCTGAAACTGGTTCCAGAGAAAGACTAAGCATTTTCTTGATGACCCTGCACAATACTGTGAGGAAAATTGACTGCAAAAGCCTACTTCACACCGCCTTCTCTTATTTTCTGCCCATTGATAAACCTCTCCCCATattttgcaaagagaaaattCACAGCAAAAGTCCACATTATGTCAGCTTTCTCATATTGAGAGCTCTGCTATGCCACTGTTGAATTTTTCCCCCCTTTCAAACTCTGCTTCCTTGGACAGATTTGGCAATAGCTTTGTAAGTGATGTGGACATAATTGCCTACAATAATGAAAACCtacaggaatttttttatttttcattttccccttaggcatatttagtaatttttccCCAGGCAGATCATTCTgagtgtgcgagtgtgtgtgcacatgttaCAAAGACAACTacc

Publications

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