RCPedia: Rtcs

Summary

Retrocopy Name	GSPT1P1	Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_2) and its respective parental gene (in scaffold_m16_p_3). Each line represents a retrocopy.
Species	Molossus molossus
Coordinates	scaffold_m16_p_2:101658174-101659864 UCSC
Strand	+
Parental Sequence	GSPT1_x2
Parental seq. overlap	1042 bp
Parental seq. overlap (%)	44.3%
Genomic Region	Intergenic
Retrocopy Summary	GSPT1P1, located on scaffold_m16_p_2:101658174-101659864, is a retrocopy of the parental gene GSPT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	GSPT1
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m16_p_3:110983349-111020269
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	GSPT2
Chimpanzee	Pan troglodytes	GSPT1P2
Bonobo	Pan paniscus	LOC117976208P1
Gorilla	Gorilla gorilla	GSPT1P2
Orangutan	Pongo abelii	GSPT1P2
Gibbon	Nomascus leucogenys	GSPT1P2
Green monkey	Chlorocebus sabaeus	GSPT1P2
Rhesus	Macaca mulatta	GSPT1P2
Baboon	Papio anubis	GSPT1P2
Golden snub-nosed monkey	Rhinopithecus roxellana	GSPT1P1
Marmoset	Callithrix jacchus	GSPT1P2
Mouse lemur	Microcebus murinus	GSPT1P1
Mouse	Mus musculus	Gspt1P2
Rat	Rattus norvegicus	Gspt1P1
Chinese hamster	Cricetulus griseus	Gspt1_1P1
Pig	Sus scrofa	GSPT1P1
Cow	Bos taurus	GSPT1P2
Sheep	Ovis aries	GSPT1P2
Dolphin	Tursiops truncatus	GSPT1P1
Horse	Equus caballus	GSPT1P2
Dog	Canis familiaris	GSPT1P3
Panda	Ailuropoda melanoleuca	GSPT1P1
Cat	Felis catus	GSPT1P1
Pale spear-nosed bat	Phyllostomus discolor	GSPT1P3
Greater mouse-eared bat	Myotis myotis	GSPT1P2
Greater horseshoe bat	Rhinolophus ferrumequinum	GSPT1P1
Egyptian rousette	Rousettus aegyptiacus	GSPT1P1
Crab-eating macaque	Macaca fascicularis	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>GSPT1P1
GGGCACCTGTGGAACATTCCAAAGAGGAACAGATAGTGTTGCTTGAAGGTTCCAATTCAGCCTTTACCATGGAACTTTCAGAACCTGTTGTAGAAAATGGAGAGGTGGAGATGGTTCTAGAGGAGTCATGGGAGCACAATAAAGAAGTAAGTGAAGCCGAGCCAGGGGGTTGTTCATTGGGAGATTCGGGCCCCCCAGAAGAAAGTGGCCAGGAAATGATGGAGAAAGAGGAAATGAGAAAATCTAAATTTGTGGTCCTACCCTCAGGTGCTCCTAAAACTGGTGCCCTTTTTGAAAAAAGTCGGCTTCAGTCCCAAAAAGGACATTCACTTTATGCCCTGCTCAGGGCTAACTGGGGCAAATATTAAAGATCAATCAGATTTCTGCCCCTGGTACACTGGATTACCATTTATTCCATATTTGGATAACATGCCAAACTTCAACAGATCAATTGATGGGCCAATTAGACTGCCAATTGTGGATAAGTACAAGGATATGGGCACTGTGGTCCTGGGAAAGCTGGAATCAGGATCCATTTTTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCACAATGTGGAAGTTCTTGGAATACTGTCTGATGATGCTGAAACTGATTATGTAGCCCCAGGTGAAAACCTTAAAATCAGACTGAAGGGAATTGAAGAAGAAGAAATTCTTCCAGGATTCATACTTTGTGACGCTAATAATCTTTGCCATTCTGGACGCACATTTGATGTTCAGATAGTGATTATTGAGCACAAATCCATCATCTGCCCAGGTTATAATGCGGTGCTGCACATTCATACTTGTATTGAGGAAGTTGAGATAACAGCCTTAATTTCCTTGGTAGACAAAAAATCCGGAGAAAAAAGTAAGACGCGGCCCCGCTTCGTGAAACAAGATCAAGTGTGCATTGCCCGTTTAAGGACAGCAGGAACTATCTGCCTTGAGACATTCAAAGATTTTCCTCAAATGGGTCGTTTTACTTTAAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAACTGGTCCCAGAGAAGGACTGAGTAGTTTTCTTGATTCTCCTGCACAATACTGTGAGAATTGACTACAGATGTTCACCACCTTCTCTTATTTACTGGCCATTGACAGACTTTTCTCCATATTTTGCGAAGAAAAATTTCACAGCAAAA

>GSPT1_x2
ATTTCCCGCCCTCTCTTCACCACACACACGGCCCCCCCGATCATGGATCCGggcagtggtggcggcggcgtcggtggcggtgggagcagcagcggcagtagcagcagcgactcggcgCCCGACTGCTGGGACCAGGCGGACATGGAAGCCCCCGGGCCAGGCCCATgcggcggccctggcggctctttggtggcggcggcggcggtggTCGAGGCCCAGCGTGAACACCTCAGTGCGGCCTTCAGCCGGCAACTCAACGTCAACGCCAAACCCTTCCTGCCGCCATCCCCAGCTGGCGCCTCAGCCAACAACCACGGAGCCGGCAGCGGCGCGGGAGGCCCTTCGGCACCTGTGGAACCTTCTCAAGAGGAACAGTCGTTTTGTGAAGGTTCAAATTCAGCTGTTAGCATGGAACTTTCAGAACCTGTTGTAGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGGAGCACAAAGAAGAAATAAATGAAGCAGAGCCAGAGAGTGGTTCCTTGGGAGATGGAAAGCCCTCAGAAGAAAATGCCCAAGAAATGATGGAGGAGGAGGAGGAAATACCAAAACCTAAGTCTGTGGTTGCACCACCAGGTGCTCCTAAAAAAGAACATGTAAATGTAGTATTCATTGGGCATGTAGATGCTGGCAAGTCAACCATTGGAGGACAAATAATGTATTTGACTGGAATGGTTGACAAAAGGACACTTGAGAAATATGAAAGAGAAGCTAAAGAAAAAAACAGAGAAACTTGGTACTTGTCTTGGGCCTTAGACACAAATCAGGAAGAACGAGACAAGGGTAAAACCGTAGAAGTGGGACGTGCCTATTTTGAAACAGAAAAGAAGCATTTCACAATTCTAGATGCCCCTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCTTCTCAAGCTGATTTGGCTGTACTGGTAATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTAAAACACTTAATTGTGCTTATTAATAAGATGGATGATCCAACAGTGAATTGGAGCAATGAGAGATATGAAGAATGTAAAGAGAAACTAGTGCCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCACTTTATGCCCTGCTCAGGACTGACTGGAGCAAATCTTAAAGAGCAATCAGATTTCTGTCCTTGGTACATTGGATTACCATTTATTCCATATCTGGATAATTTGCCAAACTTCAATAGATCAGTTGATGGACCAATCAGGCTGCCAATTGTGGATAAATACAAGGATATGGGCACTGTGGTCTTGGGAAAGCTGGAATCGGGATCTATTTGTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCACAACGTGGAAGTTCTTGGAATCCTTTCTGATGATGTAGAAACTGATTCTGTAGCCCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAAGAGGAGATTCTGCCAGGATTTATACTTTGTGATCCTAATAATCTTTGTCATTCTGGACGCACATTTGATGCCCAGATAGTGATTATAGAGCACAAATCCATCATCTGCCCAGGTTACAATGCGGTGCTGCATATTCATACCTGTATTGAGGAAGTTGAAATAACAGCCTTAATTTGCTTGGTAGACAAAAAATCAGGAGAAAAAAGTAAGACTCGACCCCGTTTTGTGAAACAAGATCAAGTATGCATTGCTCGCTTAAGGACTGCAGGAACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGCCGATTTACCTTGAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAACTGGTTCCAGAGAAAGACTAAGCATTTTCTTGATGACCCTGCACAATACTGTGAGGAAAATTGACTGCAAAAGCCTACTTCACACCGCCTTCTCTTATTTTCTGCTCATTGACAAACCTCTCCCCATATTTTGCAAAGACAAAATTCATAGCAAAAGTCCACATTATGTCAGCTTTCTCATATTGAGAGCTCTGCTATGCCACTGTTGAATTTTTCCCAAGATTTTTTTCTTCCCCCTCAAACTGCTTCCTTGGACAGATTTGGCAATAGCTTTGTAAGTGATGTGGACATAATTGCCTACAATAATGAAAACCTACAGAAATTTTTAAATTTTTCATTTTCCCCTTAGGCATACATAGTCTTTTTTCCCCCAGGCAGATCATTTTGAGTGTGCGAGTGTGTGTGCACATGTTACAAAGACAACTACCATGTTAATAAAATATTCTATTTGAAACCCT

>GSPT1_x2 

ATTTCCCGCCCTCTCTTCACCACACACACGGCCCCCCCGATCATGGATCCGggcagtggtggcggcggcgtcggtggcggtgggagcagcagcggcagtagcagcagcgactcggcgCCCGACTGCTGGGACCAGGCGGACATGGAAGCCCCCGGGCCAGGCCCATgcggcggccctggcggctctttggtggcggcggcggcggtggTCGAGGCCCAGCGTGAACACCTCAGTGCGGCCTTCAGCCGGCAACTCAACGTCAACGCCAAACCCTTCCTGCCGCCATCCCCAGCTGGCGCCTCAGCCAACAACCACGGAGCCGGCAGCGGCGCGGGAGGCCCTTCGGCACCTGTGGAACCTTCTCAAGAGGAACAGTCGTTTTGTGAAGGTTCAAATTCAGCTGTTAGCATGGAACTTTCAGAACCTGTTGTAGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGGAGCACAAAGAAGAAATAAATGAAGCAGAGCCAGAGAGTGGTTCCTTGGGAGATGGAAAGCCCTCAGAAGAAAATGCCCAAGAAATGATGGAGGAGGAGGAGGAAATACCAAAACCTAAGTCTGTGGTTGCACCACCAGGTGCTCCTAAAAAAGAACATGTAAATGTAGTATTCATTGGGCATGTAGATGCTGGCAAGTCAACCATTGGAGGACAAATAATGTATTTGACTGGAATGGTTGACAAAAGGACACTTGAGAAATATGAAAGAGAAGCTAAAGAAAAAAACAGAGAAACTTGGTACTTGTCTTGGGCCTTAGACACAAATCAGGAAGAACGAGACAAGGGTAAAACCGTAGAAGTGGGACGTGCCTATTTTGAAACAGAAAAGAAGCATTTCACAATTCTAGATGCCCCTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCTTCTCAAGCTGATTTGGCTGTACTGGTAATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTAAAACACTTAATTGTGCTTATTAATAAGATGGATGATCCAACAGTGAATTGGAGCAATGAGAGATATGAAGAATGTAAAGAGAAACTAGTGCCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCACTTTATGCCCTGCTCAGGACTGACTGGAGCAAATCTTAAAGAGCAATCAGATTTCTGTCCTTGGTACATTGGATTACCATTTATTCCATATCTGGATAATTTGCCAAACTTCAATAGATCAGTTGATGGACCAATCAGGCTGCCAATTGTGGATAAATACAAGGATATGGGCACTGTGGTCTTGGGAAAGCTGGAATCGGGATCTATTTGTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCACAACGTGGAAGTTCTTGGAATCCTTTCTGATGATGTAGAAACTGATTCTGTAGCCCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAAGAGGAGATTCTGCCAGGATTTATACTTTGTGATCCTAATAATCTTTGTCATTCTGGACGCACATTTGATGCCCAGATAGTGATTATAGAGCACAAATCCATCATCTGCCCAGGTTACAATGCGGTGCTGCATATTCATACCTGTATTGAGGAAGTTGAAATAACAGCCTTAATTTGCTTGGTAGACAAAAAATCAGGAGAAAAAAGTAAGACTCGACCCCGTTTTGTGAAACAAGATCAAGTATGCATTGCTCGCTTAAGGACTGCAGGAACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGCCGATTTACCTTGAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAACTGGTTCCAGAGAAAGACTAAGCATTTTCTTGATGACCCTGCACAATACTGTGAGGAAAATTGACTGCAAAAGCCTACTTCACACCGCCTTCTCTTATTTTCTGCTCATTGACAAACCTCTCCCCATATTTTGCAAAGACAAAATTCATAGCAAAAGTCCACATTATGTCAGCTTTCTCATATTGAGAGCTCTGCTATGCCACTGTTGAATTTTTCCCAAGATTTTTTTCTTCCCCCTCAAACTGCTTCCTTGGACAGATTTGGCAATAGCTTTGTAAGTGATGTGGACATAATTGCCTACAATAATGAAAACCTACAGAAATTTTTAAATTTTTCATTTTCCCCTTAGGCATACATAGTCTTTTTTCCCCCAGGCAGATCATTTTGAGTGTGCGAGTGTGTGTGCACATGTTACAAAGACAACTACCATGTTAATAAAATATTCTATTTGAAACCCT

Publications

PMID - Link	Title
No publications available for this retrocopy