Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PCBP2P1
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Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Ovis aries
Coordinates chr3:39968399-39969795  UCSC
Strand -
Parental Sequence XM_015094629.2
Parental seq. overlap 1176 bp
Parental seq. overlap (%) 63.2%
Genomic Region Intergenic
Retrocopy Summary PCBP2P1, located on chr3:39968399-39969795, is a retrocopy of the parental gene PCBP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PCBP2
Full Name N/A
Also known as -
Coordinate chr3:142566718-142588423
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PCBP1
Chimpanzee Pan troglodytes PCBP2P2
Bonobo Pan paniscus PCBP2P2
Orangutan Pongo abelii PCBP2P1
Gibbon Nomascus leucogenys PCBP2P3
Green monkey Chlorocebus sabaeus PCBP2P4
Crab-eating macaque Macaca fascicularis PCBP2P4
Rhesus Macaca mulatta PCBP2P5
Baboon Papio anubis PCBP2P5
Golden snub-nosed monkey Rhinopithecus roxellana PCBP2P4
Marmoset Callithrix jacchus PCBP2P13
Mouse lemur Microcebus murinus PCBP2P1
Mouse Mus musculus Pcbp2P1
Rat Rattus norvegicus Pcbp2P2
Chinese hamster Cricetulus griseus Pcbp2_1P5
Rabbit Oryctolagus cuniculus PCBP2P2
Pig Sus scrofa PCBP2P2
Cow Bos taurus PCBP2P4
Dolphin Tursiops truncatus PCBP2P5
Horse Equus caballus PCBP2P1
Dog Canis familiaris PCBP2P1
Panda Ailuropoda melanoleuca PCBP2P1
Cat Felis catus PCBP2P3
Velvety free-tailed bat Molossus molossus PCBP2P2
Greater mouse-eared bat Myotis myotis PCBP2P5
Kuhl's pipistrelle Pipistrellus kuhlii PCBP2P2
Greater horseshoe bat Rhinolophus ferrumequinum PCBP2P2
Egyptian rousette Rousettus aegyptiacus PCBP2P3
Sloth Choloepus didactylus PCBP2P14
Gorilla Gorilla gorilla Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PCBP2P1
GCTCGCCATGGATGCCGGTGTGACTGAAAGTGGACTAAATGTGACTCTCACCATTCGGCTGCTTATGCACGGAAAGGAAGTAGGAAGCATCATTGGGAAGAAAGGGGAGTCGGTTAAGAGGATCCGCGAGGAGAGTGGCGCGCGGATCAACATCTCGGAGGGGAATTGCCCGGAGAGAATCATCACTCTGACCGGCCCCACCAATGCCATCTTTAAGGCCTTCGCTATGATCATCGACAAGCTGGAAGAAGATATCAACAGCTCCATGACCAACAGCACGGCGGCCAGCAGGCCCCCGGTCACCCTGAGGCTGGTGGTGCCGGCCACCCAGTGCGGCTCCCTGATTGGGAAAGGCGGGTGTAAGATCAAAGAGATCCGCGAGAGTACCGGGGCCCAGGTCCAGGTGGCGGGGGATATGCTGCCCAACTCCACCGAGCGGGCCATCACCATTGCTGGCGTGCCGCAGTCTGTCACCGAGTGTGTCAAGCAGATCTGCCTGGTCATGCTGGAGACGCTCTCCCAGTCTCCGCAAGGGAGAGTCATGACCATTCCGTACCAGCCCATGCCGGCCAGCTCTCCAGTCATCTGCGCGGGCGGCCAAGATCGGTGCAGCGACGCTGCGGGCTACCCCCACGCCACTCATGACCTGGAGGGACCACCTCTAGATGCCTACTCGATTCAAGGACAACACACCATTTCTCCGCTCGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGATGCACGGCGGGACCGGATTCGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAAGTTTGGATGCATCTACTCAAACCACCCATGAACTCACCATTCCAAATAACTTAATTGGCTGCATAATCGGGCGCCAAGGCGCCAACATTAATGAGATCCGCCAGATGTCCGGGGCCCAGATCAAAATTGCCAACCCAGTGGAAGGCTCTTCTGGTAGGCAGGTTACTATCACTGGTTCTGCTGCCAGTATTAGTCTGGCCCAATATCTAATCAATGCCAGGCTTTCTTCTGAGAAGGGCATGGGGTGCAGCTAGAACAGTGTAGGTTCTCTCATAACCCTTTCTGCTGTTTTCCCATGATCCAACTGTGTAATTTCTGGTCAGTGATTCCAggttttaaataatttgtaaGTGTTCAGTTTCTCCACAACTTTATCATCCgctaagaatttaaaaatcacattctcTGTTCAGCTGTTAATGCTGGGAtccatatttagttttataagctTTTCcctgtttttagttttgttttgggtttttggctcatgaattttatttctgtttgtcgATAAGAAATGTAAGAGTGGAATGTTAATAAATTTCAGTTTAGTTCTGTAATGTCAagaattta
>XM_015094629.2
CCGGAGCAGCCGCAGCCTGCGCCCTCTCCCGCCCGCCCGCcctccgcccgcccgcccgccctccGCCGCCCTCCACCCGCCCCGGGGTCTctttcccccttcctcctcctcctcctccaccccccccttcctcctccgcCCGCCCGCGGGGCCCCCCTCGCCTTCCCGCCCGCCCCTATTGTTCCGCCCCCGGCCTCCCGCCCTTCCCCTTCCCGCCCGCTCCCCTTTTCCCCTCAGTCGCCTCGCGCCTGCAGTTTTTGGCTTTCACCCCCACCAGTGACCAAAGACTTGACCACTCAAAGTCCAGCTCCTCAGAACACTGCTCGACATGGACACCGGAGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCATGGAAAGGAAGTTGGCAGTATCATCGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGCGAGGAGAGTGGTGCACGTATAAACATCTCAGAAGGGAATTGTCCTGAAAGGATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAGGACATCAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCAGTCACCTTGAGGCTGGTGGTCCCTGCTAGTCAGTGCGGCTCTCTCATTGGGAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAAGTGGCAGGGGATATGCTCCCCAACTCAACTGAGCGGGCCATCACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTGAAACAGATCTGCGTGGTTATGTTGGAGactcTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTCCAGTTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACGCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGgCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTCCAAACGATtTGATTGGCTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCGAACCCAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCTCAATATCTAATCAATGTCAGgCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAGAACAATGCAGATTCATCCATAATCCTTTCTGCTGTTCACCACCACCCATGATCCATCTGTGTAGTTTCTGAACAGTCAGCGATTCCAGGTTTTAAATAGTTTGTAAATTTTCAGTTTCTACACACTTTTATCATCCACTcgtgattttttaattaaagcgtTTTAATTCCTTTCTCTGTTCAGCTGTTAATGCTGAGAtccatatttagttttataagcttctccctgttttttttttttttttggctcatgaattttttttttgtttgtcatGGAAATGTAAGAGTGGAATATTAATAcatttcagtttagttctgtAATGTCaggaatttttcaaaaaaattaaaagatggacTGGAGCTTTTTCTTTGTGAATAGAAACTGGATGCCACAGTGATTTCATGTGGGTTTTA

Publications

PMID - Link Title
No publications available for this retrocopy