| Retrocopy Name | Pcbp2P1 |
|
| Species | Mus musculus | |
| Coordinates | chr6:86501821-86502261 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001103165.1 | |
| Parental seq. overlap | 353 bp | |
| Parental seq. overlap (%) | 12.3% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Pcbp2P1, located on chr6:86501821-86502261, is a retrocopy of the parental gene Pcbp2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Pcbp2 |
| Full Name | poly(rC) binding protein 2 |
| Also known as | Hnrpx|alphaCP-2 |
| Coordinate | chr15:102378885-102408503 |
| Strand | + |
| Gene summary | Enables C-rich single-stranded DNA binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human PCBP2 (poly(rC) binding protein 2). [provided by Alliance of Genome Resources, Apr 2022] |
| >Pcbp2P1 |
| CGCCTACTCGATTCAAGGACAACACACCATTTCTCCGCTGGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGATGCACGGCGGGACGGGATTCGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAAGTTTGGATGCATCTACTCAAACCACCCATGAACTCACCATTCCAAATAACTTAATCGGCTGCATAATCGGGCGCCAAGGCGCCAACATCAATGAGATCCGCCAGATGTCCGGGGCCCAGATCAAAATTGCCAACCCGGTGGAAGGCTCTTCTGGAAGGCAGGTCACTATTACTGGCTCGGCTGCCAGTATTAGCCTGGCCCAGTATCTAATCAATGCCAGgctttcctctgagaaggggatGGGGTGCAGCTAGAACAGC |
| >NM_001103165.1 |
| TCCACCCGCCCCGGggtctctctcccccttcctcctcctcaccccccccTCCTCCGCCCGCTAGCGGGGCCCCCCTCGCCTTCCCGCCCGCCCCTATTGTTCCGCCCCCGGCCTCCCGCCCTTCCCCTTCCCGCCCGCTCCCCTTTTCCCCTCAGTCGACTCGCGCCTCCAGTTTTTGGCTTTCACTCTTCACCAGTGACCAAAGACTTGACCACTCAAAGTCCAGCTCCCTGTAACTGCTAGACATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCAGGCTACTTATGCATGGAAAGGAAGTTGGCAGTATCATCGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGCGAGGAGagtGGTGCACGTATCAACATCTCAGAAGGGAATTGTCCTGAGAGAATTATCACTTTGGCTGGACCGACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAGgACATAAGCAGCTCTATGACCAATAGTACAGCTGCCAGTAGACCCCCGGTTACCTTACGGCTGGTGGTTCCTGCTAGTCAGTGTGGCTCTCTTATTGGAAAAGGTGGTTGCAAGATCAAGGAAATAAGAGAGAGTACAGGGGCTCAGGTCCAGGTGGCAGGGGATATGCTCCCCAACTCAACTGAGCGGGCAATCACTATTGCTGGCATTCCGCAGTCCATCATTGAGTGTGTCAAACAGATCTGCGTGGTCATGTTGGAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCCTCCAGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACCCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGgcAGGTTTGGATGCATCTGCTCAAACTACTTCTCATGAACTCACCATTCCAAATGATtTGATTGGCTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCAAACCCAGTGGAAGGATCTACTGATCGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCTCAGTATCTAATCAATGTCAGGCTTTCCTCGGAGACAGGTGGCATGGGGAGCAGCTAGAACAGAGCAGACCCATCCATAATCCTGCTGTTCACCACCCATGATCCATCTGTGTAGTTTCTGAACAGTCAGCGACTCCAGGTTTTAAAATAGTTTGTAAATTTTCAGTTTCTACACACTTTATCATCCACTCatgattttttaattaaagtgTTTTAATTCCTTTCTCTGTTCAGCAGTTACGCTGAGATATCCATATTTAGTTTTATAAGCTTCTCCcccttttgttttttggtttttgtttttgtttggctcATGAATTTTTGTTTGTCATGGAAATGTAAGAGTGGATTATTAATACATTTCAGTTTAGTTCTGTAATGTCaggaatttttcaaaaaaaaaaattaaaagatggaCTGGAGCTTTTTCTTTGTGAATAGAAACTGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTTCCAGAGAGCCCTGATTCAGTTTCAATAGAATTAATggactttcttcccttttttacCACTCCAATTTTTTTAATTTGCCCTCAATCACCTCCCCCTCCATGATACTGGGTAGCCTCTGAAAACTTGTTTACGGAGATTGACAATTACACTTACCCTAGGATTGTAGAGCAGCTGGTGCATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAAGTTCTAGTAATTGTTCATTTAGTTTTCTCCATAGGTGTTTTGAGACCTCCTTGTTCTGAAATCATTTAGAAAAGTTTACCTGCTATCATTTATGTTAACTTAGAAAATAACTTGTCCAAATTCCTCAGATAAAATCTTAAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCCTCGACAGTTGGGCCTGCATGGAGTGGTTATATTTCAAGGTTGTTCACAGGGGTTACAATATGACAGTCCCCACCCCTACCAGGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTGGGCAGAGAAACAGGAACAAAGAAATGAGTTACATTGCCACCTGAGAAACCTCAGAGGGATGACCCAGCCTtagtttctttccctcctcccaagTGCAAAATGTGTAAACAGTAAACGGAAAATAAAAGTGCAGTTTTAAGTGAATCCTCTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGAAGCAAGAAGGGGCCAGCTTCCTTTCTTTATAGCTCTAGGGTAGTACTCGGAGTCATTCATTTCCACAGCTGCCAGTGTCCCCAGAACTTATTCGGTAATTGGTCAGGGGCGTCGTTCACTCTCAAGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGcgcatatatattatttatataaatatttctctATG |
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