| Retrocopy Name | Pcbp2P2 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr4:118327215-118328567 UCSC | |
| Strand | - | |
| Parental Sequence | XM_006242417.3 | |
| Parental seq. overlap | 1091 bp | |
| Parental seq. overlap (%) | 33.1% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Pcbp2P2, located on chr4:118327215-118328567, is a retrocopy of the parental gene Pcbp2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Pcbp2 |
| Full Name | poly(rC) binding protein 2 |
| Also known as | - |
| Coordinate | chr7:144077901-144103723 |
| Strand | + |
| Gene summary | Predicted to enable C-rich single-stranded DNA binding activity; mRNA binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; negative regulation of defense response to virus; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Is active in postsynaptic density. Orthologous to human PCBP2 (poly(rC) binding protein 2). [provided by Alliance of Genome Resources, Apr 2022] |
| >Pcbp2P2 |
| ACTCTCACCATTCGGCTGCTGATGCACGGAAAGGAAGTAGGCAGCATCATCGGGAAGAAAGGGGAGTCGGTGAAGAGGATCCGCGAGGAGAGCGGCGCGCGGATCAACATCTCGGAGGGGAACTGCCCGGAGAGAATCATCACGCTGACTGGGCCCACCAATGCCATCTTTAAGGCCTTCGCCATGATCATCGACAAGCTGGAGGAAGATATCAACAGCTCCATGACCAACAGTACGGCGGCCAGCAGGCCCCCGGTCACTCTTCGGCTGGTGGTGCCCGCCACCCAGTGTGGCTCCCTGATCGGCAAGGGCGGCTGCAAGATCAAGGAGATCCGCGAGAGCACGGGGGCCCAGGTCCAGGTGGCGGGGGATATGCTGCCCAACTCGACCGAGCGGGCTATCACTATCGCCGGCGTGCCGCAGTCGGTCACCGAGTGTGTTAAGCAGATCTGCCTGGTCATGCTGGAGACGCTCTCCCAGTCTCCGCAAGGGAGAGTCATGACCATCCCGTACCAGCCCATGCCGGCCAGTTCGCCAGTCATCTGCGCGGGCGGCCAAGATCGCTGCAGCGACGCGGCGGGCTATCCCCACGCcCGCCTACTCGATTCAAGGACAACACACCATTTCTCCGCTGGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGATGCACGGCGGGACGGGATTCGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAAGTTTGGATGCATCTACTCAAACCACCCATGAACTCACCATTCCAAATAACTTAATCGGCTGCATAATCGGGCGCCAAGGCGCCAACATCAATGAGATCCGCCAGATGTCCGGGGCCCAGATCAAAATTGCCAACCCAGTGGAAGGCTCTTCTGGAAGGCAGGTCACTATTACTGGCTCCGCTGCCAGTATTAGCCTGGCCCAGTATCTAATCAATGCCAGGCTTTCCTCTGAGAAGGGCATGGGGTGCAGCTAGAACAGTGTAGGTTCGCTCGTAACCCCCTTCTGCTGTTTTCCCATGATCCAACTGTGTAATTTCTGGTCAGTGATTCCAGGTTTTAAATAATTTGTAAGTGTTCAGTTTCTACACTTTATCATCCGCTAAGAATTTAAAGAAAAATCACATTCTCTGTTCAGCTGTTAATGCTGGGATCCATATTTAGTTTTATAAGCTTTTCCCTGTTTTTAGTTTCGTTTGGGTTTTTGGCTCATGGATTTTATTTTCTGTTTGTCGAAAAATGTAAGAGTGGAATGTTAATAAATTTCAGTTTAGTTCTGTAATGTCAAGAATTTA |
| >XM_006242417.3 |
| TCTCTTtcccccttcctcctcctccaccccccctcctccgccCGCTAGCGGGGCCCCCCTCGCCTTCCCGCCCGCCCCTATTGTTCCGCCCCCGGCCTCCCGCCCTTCCCCTTCCCGCCCGCTCCCCTTTTCCCCTCAGTCGACTCGCGCCTCCAGTTTTTGGCTTTCACTCTCACCAGTGACCAAAGACTTGACCACTCAAAGTCCAGCTCCCTGTAACTGCTAGACATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCAGGCTACTTATGCACGGAAAGGAAGTTGGCAGTATCATCGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGCGAGGAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATTGTCCTGAGAGAATTATAACTTTGGCTGGACCGACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAGGACATAAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCGGTTACCTTACGGCTGGTGGTTCCTGCTAGTCAGTGTGGCTCTCTTATTGGAAAAGGTGGTTGCAAGATCAAGGAAATAAGAGAGAGTACAGGGGCTCAGGTCCAGGTGGCAGGGGATATGCTCCCCAACTCAACTGAGCGAGCAATCACTATTGCTGGCATTCCGCAGTCCATCATTGAGTGTGTCAAACAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCCTCCAGTTCTCCAGTCATCTTTGCAGGTGGTCAGgacaggtacagcacaggcagcgacagtgcgagctttccccacaccaccccgtccatgtgcctcaaccctgacctggagggaccacctctagagGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACCCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCTGCTCAAACTACTTCTCATGAACTCACCATTCCAAATGATTTGATTGGCTGCATAATTGGGCGTCAGGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCAAACCCAGTGGAAGGATCTACTGATCGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGTCTGGCTCAGTATCTAATCAATGTCAGGCTTTCCTCGGAGACAGGTGGCATGGGGAGCAGCTAGAACAGAGCAGATTCATCCATAATCCCTTTCTGCTGTTCACCACCACCCATGATCCATCTGTGTAGTTTCTGAACAGTCAGCGATTCCAGGTTTTAAATAGTTTGTAAATTTTCAGTTTCTACACACTTTATCATCCACTCATGATTTTTTAATTAAAGTGTTTTAATTCTTTTCTCTGTTCAGCAGTTACGCTGAGATATCCATATTTAGTTTTATAAGCTTCTCCCCCttttttgttttgttttgttttttttttttGGCTCATGAATTTTTGTTTGTCATGGAAATGTAAGAGTGGATTATTAATACATTTCAGTTTAGTTCTGTAATGTCAGGAATTTTTCAAAAAAAGAATTAAAAGATGGACTGGAGCTTTTTCTTTGTGAATAGAAACTGGATGCCACAGTGACTTATGCGGGTGTTATTCCTGTCTGATACTATTTTTATAGAGCCCTGATTCCATTTAAATAGAATTAGTGGACTTCCTTTTTTACCACTCCCtttttttttttttttttttttttttttttGTAATTTGCCCTCAATCTTTTCCCCCCCATGATCCTGGGTGGCCTCTGAAGACTGACAGTCACACTTACCCTGGGATTGTACAGCAGCATTGTACAGTGCATTTATGGAGCTGGGACAGGAAGGTGTCGATTGGAAGCTTGAGAATCACTGCCTCGTGCATACTTTAATTTTAAAGTCTAGTAATCATTTAGTTTTCTCCACAGGTGTTGTGAGACCTTGTGTTCTTGTCCTGAAATCATTTAGAAAAGTTTACCTGCTGCCATTTATGTTAACTTAGAAAGTAACTTATCCAAATTCCTCAGGTAAAATCTTAAATCCAAGACTTAATCCATGTATTACCACTCCACTCATTCACCAAGAAAACCCTCGACAGTTGGGCCTGCATGGAGTGGTTATATTTCAGGGTTGTTCACAGGGGTTACAATATGACAGTCCCCACCCCTACCAGGCACCAGATAACAGCGGGGACTTAACCAGCACCCAGTTCTTCAGCCTGAGCCATCACATGCTATTAATCTTCTAACTTGCCTCTGGGCCCAAAGCCAGGGCTTTGGCAGAGAAACAGGAACAAAGAAATGAGTTACATTGCCACCTGAGAAACCTCAGAGGGAGGACCTAGGACCCAGCCTTAGTTTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGTAAACGGAAAATAAAAGTGCAGTTTTAAGTGAATCCTCTTCCTGCCCCCCATGTTTAGGGACAGACAGTGTAGAGACAAGCCTGGCTTTTCTATGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGAAGCAAGAAGGGACCGGTGTCCTTTCCTTACAGCTCTAGGGTAGTACTTGGAGTCATTTCCACAGCTGCCAGTGTCCCTAGAACTTAATTGGTCAGGGGCGTCGTTCACTCTGAAGCCTGACTTACGGCTAAGAAAGCCCCGTCTATCTGTTGATTATGTGGCGCatatatattatttatataaatatttctctatgtaCAAGGAATAAGAGTGTCTTTCATGGAGGAAGGGAGGCTGGGGGCCGCAAGGCATCAATGCTGTTGGAGTTGTCCAATTCAGTGCTGTCACAGTCTGAGTCCTCAGGATTGGGGCCCTGTGAAGAGTAGAAATGCAGTGAAGTGGGGGAGCTCAGCATCTTTTAGCATTACAGATTCTTTGAGGGCCCTCAGTGGGGTGCTTTTACATTATCAGTGGAGGTGAGGTTTTTTTCTTTTTTTAAAATCTCACTGTTGATAGGTCATGCTCCAAGGCACTAGGCAGACTCCTTTTAGGATACTCTGACTGCAGTGTATTGCTGTCATACAAGTTAAACCTCTGGCACTATATACTTGGATATTTGTTTTAATGGTTCTGGAAAAAATTGGTGGCTTGAAGGCTAAATAAATACCTTTTGTAGGTTAGTCA |
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