Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTA2P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr15:3917680-3918389  UCSC
Strand -
Parental Sequence XM_033841657.1
Parental seq. overlap 517 bp
Parental seq. overlap (%) 35.9%
Genomic Region Intragenic (ACTB)
Retrocopy Summary ACTA2P1, located on chr15:3917680-3918389, is a retrocopy of the parental gene ACTA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTA2
Full Name N/A
Also known as -
Coordinate chr16:36703849-36721433
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTC1P1
Chimpanzee Pan troglodytes ACTA1P2
Gibbon Nomascus leucogenys ACTC1P2
Crab-eating macaque Macaca fascicularis ACTC1P1
Rhesus Macaca mulatta ACTA1P1
Baboon Papio anubis ACTA1P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTA1P1
Marmoset Callithrix jacchus ACTA1P1
Mouse Mus musculus Acta1P1
Rat Rattus norvegicus Acta1P2
Pig Sus scrofa ACTC1P1
Cow Bos taurus ACTC1P2
Sheep Ovis aries ACTC1P1
Horse Equus caballus ACTC1P2
Cat Felis catus ACTC1P2
Pale spear-nosed bat Phyllostomus discolor ACTA1P1
Velvety free-tailed bat Molossus molossus ACTA1P1
Greater mouse-eared bat Myotis myotis ACTA1P1
Kuhl's pipistrelle Pipistrellus kuhlii ACTA1P1
Greater horseshoe bat Rhinolophus ferrumequinum ACTA1P1
Egyptian rousette Rousettus aegyptiacus ACTA1P2
Zebra Finch Taeniopygia guttata ACTA2P1
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTA2P1
CAGATCATGTTCGAGACCTTCAACACCCCAGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCTTGTACGCCTCTGGACGCACCACTGGCATCGTGATGGACTCCGGTGATGGGGTCACCCACACGGTGCCTATCTACGAGGGGTACGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACGGACTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTACGTGACATCAAGGAGAAGCTCTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGATGGTCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGCCCTGAGGCTCTCTTCCAGCCTTCCTTCCTGGGTGAGTCAGGAGGTCTCATGCCCGCCCCACACGAGGGTCACTCTGGCCACACTGGAAGTTAAGTctggcttctctttctcctcaGGCATGGAATCTTGTGGCATCCACGAAACTACCTTCAATTCCATCATGAAGTGTGACGTCGACATCCGCAAGGACCTCTATGCCAACACGGTGCTGTCTGGCGGGACCACCATGTACCCAGGCATCGCTGACAGGATGCAGAAGGAGATCACCGCCCTGGCTCCCAGCACGATGAAGATCAAGG
>XM_033841657.1
GTTTTGTGCTGAGGTCCCTATATGGTTGTGTTAGACTGAACGGAGGGCTGAAGCCTGTCTTTGTTCCTTGTTTGGGAAGCAAGTGGGAGGGGAGCAGACCAAGGAGCTATATAACCCTTCAGCGTTCAGCTTCCCCGAACACCAGCCAGAGGAGAGGAGCCCAGCGAGCACTTTCAGGGACCCCGTGTCGCAGCTCCAGCCAAGATGTGTGAAGAAGAGGACAGCACCGCCCTGGTGTGTGACAATGGCTCTGGGCTCTGTAAGGCTGGCTTTGCTGGGGACGATGCTCCCAGGGCTGTTTTCCCGTCCATTGTGGGACGTCCCAGACATCAGATCTGGCACCACTCTTTCTACAATGAGCTTCGCGTTGCCCCTGAAGAGCATCCAACCCTGCTCACCGAGGCACCCCTGAACCCCAAAGCCAACCGGGAGAAAATGACCCAGATCATGTTTGAGACTTTCAATGTCCCAGCCATGTACGTGGCTATTCAGGCGGTGCTGTCCCTCTACGCCTCTGGACGTACAACTGGCATTGTGCTGGACTCTGGAGATGGTGTTACCCACAATGTGCCCATCTATGAGGGCTATGCCCTGCCCCACGCCATCATGCGTCTGGACCTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACCGAGCGAGGCTATTCCTTCGTGACCACAGCTGAGCGTGAGATTGTCCGGGACATCAAGGAGAAACTGTGCTATGTAGCCCTGGACTTTGAAAACGAGATGGCCACTGCTGCGTCCTCCTCTTCCCTCGAGAAGAGCTACGAGCTGCCTGACGGGCAGGTGATCACCATCGGTAACGAGCGGTTCCGCTGCCCAGAGACCCTGTTCCAGCCCTCGTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACCTACAACAGCATCATGAAATGCGATATTGACATCAGGAAGGACCTCTATGCTAACAACGTCCTGTCCGGGGGCACCACCATGTACCCCGGCATTGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCGCCCAGCACCATGAAGATCAAGATCATTGCCCCTCCCGAGCGCAAATACTCTGTCTGGATTGGCGGCTCCATCCTGGCCTCTCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTACGACGAGGCCGGGCCCTCCATCGTCCACCGCAAATGCTTCTAGAACACTTCCCTGCTCTCTGTCTGTAGCACACACTGTGAATGTTTTGTGGAATAATGCCTTCAGTTCTTTTCCAAATCattcctagccaaagctctgACTTGTTACCtatgtgttttttaataaatctgaAATATGTTACCTGTAA

Publications

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