Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTA1P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_24) and its respective parental gene (in scaffold_m29_p_27). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_24:3192110-3193818  UCSC
Strand -
Parental Sequence ACTA1_x4
Parental seq. overlap 871 bp
Parental seq. overlap (%) 47.5%
Genomic Region Intergenic
Retrocopy Summary ACTA1P1, located on scaffold_m29_p_24:3192110-3193818, is a retrocopy of the parental gene ACTA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTA1
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_27:536291-539052
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTC1P1
Chimpanzee Pan troglodytes ACTA1P2
Gibbon Nomascus leucogenys ACTC1P2
Crab-eating macaque Macaca fascicularis ACTC1P1
Rhesus Macaca mulatta ACTA1P1
Baboon Papio anubis ACTA1P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTA1P1
Marmoset Callithrix jacchus ACTA1P1
Mouse Mus musculus Acta1P1
Rat Rattus norvegicus Acta1P2
Pig Sus scrofa ACTC1P1
Cow Bos taurus ACTC1P2
Sheep Ovis aries ACTC1P1
Dolphin Tursiops truncatus ACTA2P1
Horse Equus caballus ACTC1P2
Cat Felis catus ACTC1P2
Pale spear-nosed bat Phyllostomus discolor ACTA1P1
Velvety free-tailed bat Molossus molossus ACTA1P1
Greater mouse-eared bat Myotis myotis ACTA1P1
Kuhl's pipistrelle Pipistrellus kuhlii ACTA1P1
Egyptian rousette Rousettus aegyptiacus ACTA1P2
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTA1P1
CAGGGTGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGCGACGAGGCCCAGAGTAAGAGAGGCATCCTGACCCTGAAGTATCCCATCGAGCACGGTATCGTCACCAACTGGGACGATATGGAGAAGATCTGGCATCACACCTTTTACAATGAGCTGCGTGTGGCTCCTGAGGAGCACCCTGTGCTGTTGACTGAGGCTCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGGTCAGTGCTCTACTGGCCTTCCTCGGGAAGCCACTCCTTCTTTTCTGGCCCTTCTGTGCCACGCCTTTTCTCACTTGTTCTTTCTTCTGCCATTCTCCTAGGATTTTCTTCTCTGACCTGAGTCTCCTTTGGAACTCTGCAGGTTCTATTTGCTTTTTTCCAGATGGAATCTTTTTCGTGTTTGGTTTTCTGACTAGGTGTTTAAAGTATAAAGTGCTGTGGGTGTAGGTACTAACACTGGCTCATGTGGCAAACCCAATGAGGATGGTGTGAAGTGGCCTGGGAGTGTGTATTCAGTAGGTGCACAGTAGATCTGAAAATCCCCATCTTGGGGTCCCCAGCACACTTAGCGGCGTTCCTTGCACTCTGCATGTTCCCAGTTTGGCCTGGCTGTCTGATGGCTTCCTGAGAGTGAAGTGGCCCATCTTTCCCTACAGATCATGTTCGAGACCTTCAACACTCCAGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATTGTGATGGACTCCGGTGATGGGGTCACCCACACTGTGCCCATCTACGAGGGGTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACGGACTACCTCATGAAGATCCTCACAGAGCGTGGCTACAGCTTCACCACCACAGCTGAGCGGGAAATTGTGCGTGACATCAAGGAGAAGCTCTGCTATGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCGGCCTCCAGCTCTTCTCTGGAGAAGAGCTACGAGTTGCCTGACGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGCTGCCCCGAGGCGCTTTTCCAGCCTTCCTTCCTGGGTGAGTAAGGCTTTGACCTTGCCACCACACAATGGTCACCCTTGTGGCCACACTGGAAGCTAAGTCTGGCCTCTGTTCCCCTCAGGCATGGAATCCTGTGGCATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGATGTCGACATCCGCAAGGACCTCTATGCCAACACAGTGTTGTCTGGTGGGACCACCATGTACCCAGGTATCGCCGATAGAATGCAGAAGGAGATCACCGCTCTGGCTCCCAGCACGATGAAGATTAAGGTGAGTGTCCGCGCAGCCTGTGCTGGCCTGGTCACATGGAGTGTTAGAGAGTTCCCATGCTGACTTTACTGTAGGATGCAGCCACCTGTGGTTGTCAAGGCAACCTTTCTGGGGTAACGCACAGCCCTTGGGGCTGTTCCATCAAGGTCCTTATGCTAACTGTCCTGTTCTCTCCCAGATCATTGCGCCCCCTGAGCGCAAGTACTCGGTGTGGATCGGTGGCTCTATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAATACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGG
>ACTA1_x4
ATGTGTGACGAAGACGAGACCACCGCCCTTGTGTGCGACAATGGCTCCGGCCTGGTGAAAGCCGGCTTCGCCGGCGATGACGCCCCTAGGGCTGTGTTCCCGTCCATCGTGGGCCGCCCTCGCCATCAGGGCGTCATGGTGGGTATGGGGCAGAAGGACTCGTACGTGGGCGACGAGGCTCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCCGAGGAGCACCCCACCCTGCTCACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACGTGCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCCGGCCGTACCACCGGCATCGTGCTAGACTCCGGCGACGGCGTCACCCACAACGTGCCCATCTATGAGGGCTACGCCCTCCCTCACGCCATCATGCGCCTGGACCTGGCGGGCCGCGACCTCACCGACTACCTAATGAAGATCCTCACCGAACGAGGCTACTCCTTCGTGACCACAGCCGAGCGCGAGATCGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGGCGACGGCCGCCTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGGCAGGTCATCACCATCGGCAACGAGCGCTTCCGCTGCCCGGAGACGCTCTTCCAGCCGTCCTTCATCGGCATGGAGTCGGCGGGCATCCACGAGACCACCTACAACAGCATCATGAAGTGCGACATCGACATCAGGAAGGACCTGTACGCCAACAACGTCATGTCGGGAGGGACCACCATGTACCCCGGGATCGCCGACCGCATGCAAAAGGAGATCACGGCGCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCCCCGCCGGAGCGCAAGTACTCGGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAGTACGACGAGGCCGGCCCGTCCATCGTGCACCGCAAATGCTTCTAG

Publications

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