Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC101873153P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Melopsittacus undulatus
Coordinates chr4:12772668-12772862  UCSC
Strand +
Parental Sequence XM_034071503.1
Parental seq. overlap 163 bp
Parental seq. overlap (%) 16.4%
Genomic Region Intergenic
Retrocopy Summary LOC101873153P1, located on chr4:12772668-12772862, is a retrocopy of the parental gene LOC101873153. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101873153
Full Name N/A
Also known as -
Coordinate chr21:2391680-2393684
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus ARF1P6
Orangutan Pongo abelii ARF1P5
Green monkey Chlorocebus sabaeus ARF1P4
Crab-eating macaque Macaca fascicularis ARF1P3
Rhesus Macaca mulatta ARF1P3
Baboon Papio anubis ARF1P4
Golden snub-nosed monkey Rhinopithecus roxellana ARF1P1
Mouse lemur Microcebus murinus ARF1P1
Mouse Mus musculus Arf1P2
Rat Rattus norvegicus Arf1P3
Chinese hamster Cricetulus griseus Arf1_1P4
Rabbit Oryctolagus cuniculus ARF1P8
Pig Sus scrofa ARF3P1
Cow Bos taurus ARF3P1
Sheep Ovis aries ARF3P1
Dolphin Tursiops truncatus ARF3P1
Horse Equus caballus ARF3P1
Dog Canis familiaris ARF1P3
Panda Ailuropoda melanoleuca ARF3P1
Velvety free-tailed bat Molossus molossus ARF1P2
Greater mouse-eared bat Myotis myotis ARF1P1
Kuhl's pipistrelle Pipistrellus kuhlii ARF1P1
Greater horseshoe bat Rhinolophus ferrumequinum LOC00388P1
Chicken Gallus gallus ARF3P1
Zebra Finch Taeniopygia guttata ARF3P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Turkey Meleagris gallopavo Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101873153P1
CAAGGAGATGCGGATCCTGATGCTGGGTCTGGACGCGGCTGGTAAAACCACAATCCTGTACAAACTGAAACTGGGCCAGTCTGTCACCACCATCCCCACCGTAGGCTTCAACGTGGAGACGGTTACTTACAAAAACGTCAAGTTCAATGTGTGGGATGTCGGGGGCCAGGACAAGATCCGTCCCCTCTGGAGGCA
>XM_034071503.1
TCGGCGTGATCGGGCCTCCGCTTCCGGCGGCGGGAGCGGTGCAGAGTCAGCTGCGGGCGGGGGGAGCCACCGGTACCGGCACCGGCACCAGGATCCGGCCTCGCCTGCGGACGGAGCCAGCGCCACCGTCACCATGGGCAACATCTTCGGGAACCTGCTGAAGAGCCTCATTGGGAAGAAGGAGATGCGGATCCTGATGGTGGGGCTGGACGCTGCCGGGAAGACCACCATCCTCTACAAGCTGAAGCTGGGGGAGATCGTCACCACCATCCCCACCATAGGGTTCAACGTGGAGACAGTGGAGTACAAGAACATCAGCTTTACCGTGTGGGATGTGGGTGGGCAGGACAAGATCCGGCCCCTCTGGAGGCATTACTTCCAAAACACCCAGGGGCTCATCTTCGTGGTGGACAGCAACGACCGGGAGCGGGTGAATGAGGCACGGGAGGAACTCATGCGGATGCTGGCGGAGGATGAGCTGCGGGACGCTGTCCTCCTCGTCTTCGCCAACAAGCAGGACCTGCCCAATGCCATGAACGCGGCAGAGATCACGGACAAGCTGGGGCTGCACTCCCTGCGCCACCGTAACTGGTACATCCAAGCGACCTGCGCCACCAGCGGGGATGGGCTCTACGAGGGCCTCGACTGGCTCGCCAACCAGCTCAAGAACAAGAAGTGAGCGGGCGGGCGGCCTCAGGCCCCCACCCCCGTGTCCCCGGGGTCCCCCCCGGACTCCCCCATCCCCGCCCCGGttgggttttgctttctcttctggcACCGGTTGCTGTGGGGGTCTTTTTCCGCCTTGTTTTGGGGTCTCCCCTCGGATCTCGTGTGTGCGTGTGTGGAAATACAGCTCTATGGAACGTACctggggggggacacgggggcTGGGTGCCCGGGGGGGTCACGCTGGGGTACCCCATCCCCGTGCATgtcccctccccttcctctggACCAAATGTGGGGactgtggggctgcagggggcA

Publications

PMID - Link Title