Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ARF1P4
Plot displaying the genomic locations of a retrocopy (in chr24) and its respective parental gene (in chr25). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr24:26949545-26949733  UCSC
Strand +
Parental Sequence XM_007988207.1
Parental seq. overlap 155 bp
Parental seq. overlap (%) 8.2%
Genomic Region Intergenic
Retrocopy Summary ARF1P4, located on chr24:26949545-26949733, is a retrocopy of the parental gene ARF1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARF1
Full Name N/A
Also known as -
Coordinate chr25:1628836-1644502
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARF1P5
Chimpanzee Pan troglodytes ARF1P5
Bonobo Pan paniscus ARF1P6
Gorilla Gorilla gorilla ARF1P5
Orangutan Pongo abelii ARF1P5
Gibbon Nomascus leucogenys ARF1P1
Crab-eating macaque Macaca fascicularis ARF1P3
Rhesus Macaca mulatta ARF1P3
Baboon Papio anubis ARF1P4
Golden snub-nosed monkey Rhinopithecus roxellana ARF1P1
Marmoset Callithrix jacchus ARF1P10
Mouse lemur Microcebus murinus ARF1P1
Mouse Mus musculus Arf1P2
Rat Rattus norvegicus Arf1P3
Chinese hamster Cricetulus griseus Arf1_1P4
Rabbit Oryctolagus cuniculus ARF1P8
Pig Sus scrofa ARF3P1
Cow Bos taurus ARF3P1
Sheep Ovis aries ARF3P1
Dolphin Tursiops truncatus ARF3P1
Horse Equus caballus ARF3P1
Dog Canis familiaris ARF1P3
Panda Ailuropoda melanoleuca ARF3P1
Cat Felis catus ARF3P1
Pale spear-nosed bat Phyllostomus discolor LOC02923P1
Velvety free-tailed bat Molossus molossus ARF1P2
Greater mouse-eared bat Myotis myotis ARF1P1
Kuhl's pipistrelle Pipistrellus kuhlii ARF1P1
Greater horseshoe bat Rhinolophus ferrumequinum LOC00388P1
Egyptian rousette Rousettus aegyptiacus LOC03094P1
Sloth Choloepus didactylus ARF3P1
Platypus Ornithorhynchus anatinus ARF3P1
Budgerigar Melopsittacus undulatus LOC101873153P1
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARF1P4
GGAAATGCGGATCCTCATGTTGGGCCTGGACGCGGCCGGCAAGACAACAATCCTGTACAAGTTGAAGCTGGGCCAGTCGGTGACCACCATTCCCACTGTGGGTTTCAACGTGGAGACGGTGACTTACAAAAATGTCAAGTTCAACGTATGGGATGTGGGCGGCCAGGACAAGATCCGGCCGCTCTGGCG
>XM_007988207.1
CGAGCGGGCGGGCAGTGGACAGGGACCCTGCGCCTTTCCCTGTCTGCTGAACGGAATGCGTGGACCTCCGGGGAAGCCCAGAGTGCCTCCCTTCACAACAGTGAGACGCGATTTGGGGTGTCCCTGGCCAGTGTCCTTCCACCTGTCCACAAATATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGGGCCTGGATGCTGCGGGGAAGACCACGATCCTGTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAACGTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTGGGTGGCCAGGACAAGATCCGGCCCCTGTGGCGCCACTACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGACAGAGAGCGCGTGAACGAGGCCCGTGAGGAGCTCATGAGAATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCATGAATGCAGCTGAGATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCCACCAGCGGTGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGAATGCGACCCCCCTCCCTCTCACTCCTCTTGCCCTCTGCTTTACTCTCATGTGGCAAACGTGCGGCTCGTGGTGTGAGTGCCAGAAGCTGCCTCCGTGGTTTGGTCACCGTGTGCATCGCACCGTGCTGTAAATGTGGCAGACGCAGCCTGCGGCCAGGCTTTTTATTTAATGTAAATAGTTTTTGTTTCCAATGAGGCAGTTTCTGGTACTCCTATGCAATATTACTCAGCTTTTTTTATTGTAAAAAGAAAAATCAACTCACTGTTCAGTGCTGAGAGGGGATGTAGGCCCATGGGCACCTGGCCTCCAGGAGTCGCTGTGTTGGGAGAGCCGGGCATGCCCTTGGCTTTAGAGCTGTGTTGAAATCCATTTTGGTGGTTGGTTTTTAACCCAAACTCAGTGCATTTTTTAAAATAGTTAAGAATCCAAGTCAAGAACACTTGAACACACAGAAGGGAGACCCCGCCTAGCATAGATTTGCAGTTATGGCCTGGATGCCGGTCACCAGCCCAGCTGTTCCCCTCAGGAACATGTGGTGGCGCAGCAGACCGCGATCAATTCTGCATGGTCATAGTAGAGATCCCCGCAACTCGCTTGTACTTGGGTCACCCTGCATTCCATAGCCATGTGCTTGTCCCTGTGCTCCCACGGTTCCCAGGGGCCAGGCTGGGAGCCCACAGCCACCCCACTCTCCCGCAGGCCGCCCCACCCACCTTCAGGCAGCCTATGGGACACAGGGCCCCATCTGTCCCTCGGTCACCGTGTGGCCAGAGTGGGTCCGTTGTCCCCAACCCTCGTGCTCGCTCAGACACTTTGGCAGGATGTCTGGGGCCTCACCAGCAGGAGCGCGTGCAAGCCGGGCAGGCGGTCCACCTAGACCCACAGCCCCTTGGGAGCACCCCACCTCTGTGTGTGATGTAGCTTTCTCTCCCTCAGCCTGCAAGGGTCCGATTTGCCATCGAAAAAGACAACCTCTACTTTTTTCTTTTGTATTTTGATAAACACTGAAGAAGCTGGAGCTGTTAAATTTATCTTGGGGAAACCTCAGAACTGGTCTATTTGGTGTCGTGGAACCTCTTACTGCTTTCAATACACAATTAGTAATCAACTGTTTTGTATACTTGTTTTCAGTTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAGAATAAAATCTCTTAACTATTTCA

Publications

PMID - Link Title