Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC00388P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_8) and its respective parental gene (in scaffold_m29_p_10). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_8:41360464-41360659  UCSC
Strand -
Parental Sequence LOC00388_x2
Parental seq. overlap 156 bp
Parental seq. overlap (%) 28.6%
Genomic Region Intergenic
Retrocopy Summary LOC00388P1, located on scaffold_m29_p_8:41360464-41360659, is a retrocopy of the parental gene LOC00388. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC00388
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_10:49635882-49653040
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARF1P5
Chimpanzee Pan troglodytes ARF1P5
Bonobo Pan paniscus ARF1P6
Gorilla Gorilla gorilla ARF1P5
Orangutan Pongo abelii ARF1P5
Gibbon Nomascus leucogenys ARF1P1
Green monkey Chlorocebus sabaeus ARF1P4
Crab-eating macaque Macaca fascicularis ARF1P3
Rhesus Macaca mulatta ARF1P3
Baboon Papio anubis ARF1P4
Golden snub-nosed monkey Rhinopithecus roxellana ARF1P1
Marmoset Callithrix jacchus ARF1P10
Mouse lemur Microcebus murinus ARF1P1
Mouse Mus musculus Arf1P2
Rat Rattus norvegicus Arf1P3
Chinese hamster Cricetulus griseus Arf1_1P4
Rabbit Oryctolagus cuniculus ARF1P8
Pig Sus scrofa ARF3P1
Cow Bos taurus ARF3P1
Sheep Ovis aries ARF3P1
Dolphin Tursiops truncatus ARF3P1
Horse Equus caballus ARF3P1
Dog Canis familiaris ARF1P3
Panda Ailuropoda melanoleuca ARF3P1
Cat Felis catus ARF3P1
Pale spear-nosed bat Phyllostomus discolor LOC02923P1
Velvety free-tailed bat Molossus molossus ARF1P2
Greater mouse-eared bat Myotis myotis ARF1P1
Kuhl's pipistrelle Pipistrellus kuhlii ARF1P1
Egyptian rousette Rousettus aegyptiacus LOC03094P1
Sloth Choloepus didactylus ARF3P1
Platypus Ornithorhynchus anatinus ARF3P1
Budgerigar Melopsittacus undulatus LOC101873153P1
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC00388P1
GGGAACAAGGAAATGCGGATCCTCATGTTGGGCCTGGACGCGGCCGGCAAGACAACAATCCTGTACAAGTTGAAGCTGGGCCAGTCAGTGACCACCATCCCCACCGTGGGTTTCAACGTGGAGACGGTGACTTATAAAAACGTCAAGTTCAACGTGTGGGATGTGGGCGGCCAGGACAAGATCCGGCCGCTCTGGC
>LOC00388_x2
ATGGGCAACATCTTTGGGAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGTATCCTGATGGTGGGCCTGGATGCTGCCGGGAAGACCACCATCCTGTATAAGCTGAAACTGGGGGAGATTGTCACCACCATCCCCACCATCGGGTTCAATGTGGAGACAGTGGAGTACAAGAACATCAGCTTCACAGTTTGGGATGTTGGTGGCCAGGACAAGATTCGGCCTCTCTGGAGACACTACTTCCAGAACACCCAAGGGCTGATATTTGTGGTGGACAGCAATGATCGGGAGCGAGTGAATGAAGCGCGGGAGGAGCTGATGAGGATGCTGGCAGAGGACGAGCTCCGGGATGCAGTGCTCCTCGTCTTCGCAAACAAACAGGATTTGCCTAATGCCATGAATGCTGCTGAGATCACAGACAAGTTGGGCCTGCATTCCCTGCGTCATCGCAACTGGTACATTCAGGCCACTTGTGCCACCAGCGGGGACGGGCTGTACGAAGGCCTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGA

Publications

PMID - Link Title