Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CSTF2P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_17) and its respective parental gene (in scaffold_m16_p_2). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_17:36135753-36135934  UCSC
Strand -
Parental Sequence CSTF2_x2
Parental seq. overlap 162 bp
Parental seq. overlap (%) 7.9%
Genomic Region Intergenic
Retrocopy Summary CSTF2P1, located on scaffold_m16_p_17:36135753-36135934, is a retrocopy of the parental gene CSTF2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CSTF2
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_2:27594738-27618392
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CSTF2P1
Chimpanzee Pan troglodytes CSTF2P1
Bonobo Pan paniscus CSTF2P1
Gorilla Gorilla gorilla CSTF2P1
Orangutan Pongo abelii CSTF2P1
Gibbon Nomascus leucogenys CSTF2P1
Green monkey Chlorocebus sabaeus CSTF2P1
Crab-eating macaque Macaca fascicularis CSTF2P1
Rhesus Macaca mulatta CSTF2P1
Baboon Papio anubis CSTF2P1
Golden snub-nosed monkey Rhinopithecus roxellana CSTF2P1
Marmoset Callithrix jacchus CSTF2P1
Mouse lemur Microcebus murinus CSTF2P2
Mouse Mus musculus Cstf2P1
Rat Rattus norvegicus Cstf2P1
Rabbit Oryctolagus cuniculus CSTF2P3
Pig Sus scrofa CSTF2P1
Cow Bos taurus CSTF2P2
Sheep Ovis aries CSTF2P2
Dolphin Tursiops truncatus CSTF2P3
Horse Equus caballus CSTF2P1
Dog Canis familiaris CSTF2P2
Panda Ailuropoda melanoleuca CSTF2P1
Cat Felis catus CSTF2P1
Pale spear-nosed bat Phyllostomus discolor CSTF2P1
Greater mouse-eared bat Myotis myotis CSTF2P1
Kuhl's pipistrelle Pipistrellus kuhlii CSTF2P1
Greater horseshoe bat Rhinolophus ferrumequinum CSTF2P1
Egyptian rousette Rousettus aegyptiacus CSTF2P1
Sloth Choloepus didactylus CSTF2P4
Chinese hamster Cricetulus griseus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CSTF2P1
TTTAGTCCTGGGCAGAGCCAAGTGACTCCACAGGATCAAGAAAAGGCGGCTTTGATCATGCAGGTTCTTCAACTGACTGCAGATCAAATTGCCATGCTGCCTCCTGAGCAAAGGCAGAGTATCCTGATTTTAAAGGAACAAATCCAGAAATCTACTGGAGCTTCTTGAAAGGTTTCAGAAAA
>CSTF2_x2
GACACAAAGAGACAGTGAGCAGCGAGGAAAGCCCCCTGCACCTCTTGAATCGCCTTAAGAACCTGTGAAAGGTCAGGCGTGCAGCGCTGCCTGCCTGTCTTATGGAGCGGCCAAGCTGATGAACTCGTGGGCAAAGTGATGTTCCCCTTCTCCCGAGTGGGGAACATTCCCTATGAGGCTACTGAAGAGCAATTAAAGGACATCTTTTCTGAGGTTGGACCTGTTGTTAGTTTCAGGTTGGTATATGATAGGGAGACAGGAAAGCCAAAGGGTTATGGCTTCTGTGAATACCAAGACCAAGAGACAGCACTTAGTGCCATGAGAAACCTGAATGGGCGTGAATTCAGTGGGAGAGCACTTCGAGTGGACAATGCTGCCAGTGAAAAGAACAAAGAAGAGCTGAAGAGCCTTGGCACTGGTGCCCCTGTCATTGAATCACCTTATGGAGAGACCATCAGTCCTGAGGATGCCCCTGAGTCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAGCAGATGTTTGAGCTGATGAAACAGATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGAAACATGTTGCTCCAAAACCCTCAACTGGCGTATGCTTTGCTACAAGCACAGGTAGTGATGAGAATTGTGGATCCAGAGATTGCCCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATGGCCGGCAACCCTCAGCCAGTCCACAGCACTGGGCCTCCTTCAGGAGCCGGTGTGTCAATGAACCAGCAGAATCCTCAAGCCCCTGTGGCCCAGCCTCTGGGTGGCATGCATGTCAATGGTGCACCTCCTTTGATGCAAGCTTCTATGCAGGCTGGAGTTCCAGCACCAGGGCAAATACCAACTGCTGTAACAGGACCTGGCCCTGGTTCCTTAGCTCCTGGAGGAGGAATGCAGGCCCAGGTTGGAATGCCAGGAAGTGGACCAGTGTCGTTGGAAAGGGCACAAGTGCCGATGCAAGACCCCAGAGCAGCTATGCAGCGTGGGCCCTTGCCTGCCAACATCCCAACTCCTCGAGGTCTGTTAGGAGATGCTCCAAATGACCCACGTGGGGGCACTTTACTTTCTGTAACTGGAGAGGTAGAGCCTAGAGGTTACCTGGGACCACCTCATCAGGGTCCACCCATGCACCATGTCCCTGGCCATGACAACCGTGGCCCGCCCCCACATGAGATGAGGGGAGGGCCATTAGCCGAGCCCAGACCTCTAATGGCAGAGCCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCCTTGGATGGCAGAGGCGGAAGAGATCCCCGAGGCATAGACACACGAGGGATGGAGGCACGAGCCATGGAGGCACGAGCCATGGAGGCAAGAGGATTAGATGCCAGAGGATTGGAGGCTCGTGCAATGGAAGCACGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTGCAATGGAAGTTAGAGGGATGGAGGCCAGAAGCATGGATACAAGGGGCCCAGTCCCTGGCCCTAGAGGCCCTATACCTAGTGGAATCCAGGGTCCCAATCCTATTAACATGGGGGCAGTTGGCCCCCAGGGATCCAGACAGGTCCCAGTCATGCAGGGAGCAGGCATGCAAGGAGCAAATATCCAGGGTGGAGGCCAGCCCGGTGGCTTTAGTCCTGGCCAGAACCAAGTCACTCCACAGGACCATGAGAAGGCTGCTTTAATTATGCAGGTTCTTCAACTGACTGCAGACCAGATCGCCATGCTGCCTCCTGAACAGAGGCAGAGTATCCTGATCTTAAAGGAACAAATACAGAAATCCACTGGAGCACCTTGAAAGGTTTTCAGAAATACCTGGCAACAAATCTGGAAATTAATTCAGTAACTTTGTTGAAATTTTGCAAAAAGATGACTTCTACATCCTAACCCTTGAATGACTCAAATTGGTGCCAGGTGGAGGATTCCCATCACCTTCTCTCAGAAACAAACTAGATCATTATGTTGTCTTAGTTTGTATATTTTCTGTGACATGAAATAAACTTTGAACAC

Publications

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