| Retrocopy Name | Cstf2P1 |
|
| Species | Mus musculus | |
| Coordinates | chr19:31062139-31062375 UCSC | |
| Strand | + | |
| Parental Sequence | NM_133196.6 | |
| Parental seq. overlap | 194 bp | |
| Parental seq. overlap (%) | 4.3% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Cstf2P1, located on chr19:31062139-31062375, is a retrocopy of the parental gene Cstf2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Cstf2 |
| Full Name | cleavage stimulation factor, 3' pre-RNA subunit 2 |
| Also known as | C630034J23Rik|Cstf64|mir-3112 |
| Coordinate | chrX:132959925-132987571 |
| Strand | + |
| Gene summary | Predicted to enable mRNA binding activity. Predicted to be involved in pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in cleavage body. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CSTF2 (cleavage stimulation factor subunit 2). [provided by Alliance of Genome Resources, Apr 2022] |
| >Cstf2P1 |
| GATGCAGGGAGCTGGCATGCAAGGAGCCAGTAAGCAAGGTGGAGGCCAGCCTAGCAGTTTTAGCCCTGGGCAAAGCCAGGTAACTCCACAAGATCAAGAAAAAGCAGCTTTGATCATGCAGGTTCTCCAGCTGACTGCGGATCAGATTGCCATGCTGCCTCCCGAACAAAGGCAGAGCATTTTGATTTTAAAGGAACAAATCCAGAAATCCACTGGGGCTTCTTGAATGGTTTTCAA |
| >NM_133196.6 |
| TGTTGCCCCTCCCCCGGGGCCGAGCCGCCTGGCGGGAACGACCGCGGTGAGGCGCGCGGCCGGGCTCCGCGGCGGCGCTTCGGGGCCAGGTGCTTCCGGCTCCCACCGGACGGAGGCGGGCTGGGCCGTGGTCTCGCTCGGCCGCGGAAGTGTGCTTTAGCGCACCGGAAGCCACCTCGGGGGTGAGCCATGGCGGGTttgccagtgagagaccctgcggTGGATCGTTCCCTGCGCTCCGTCTTCGTGGGAAACATCCCTTATGAAGCTACTGAAGAACAACTGAAGGACATTTTCTCTGAGGTTGGGCCTGTTGTTAGTTTCAGATTGGTATACGATAGGGAGACAGGAAAACCAAAGGGCTATGGCTTCTGCGAGTACCAAGACCAAGAGACAGCACTTAGTGCCATGCGGAACTTGAATGGGCGTGAATTCAGCGGGAGAGCACTTCGAGTGGATAATGCTGCCAGTGAAAAGAACAAGGAGGAACTGAAGAGCCTTGGCACTGGTGCACCTGTCATAGAGTCACCTTATGGAGAAAGCATCAGCCCTGAGGATGCCCCTGAATCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAACAGATGTTTGAGTTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGAAACATGTTGCTTCAGAATCCACAGCTGGCTTATGCTTTGTTGCAAGCACAGGTAGTGATGAGAATTGTGGATCCTGAGATTGCGCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTTCAGGCAACCCTCAGCCAGTTCATGTTGCTGGGCCTGGCTCAGGACCCAATGTTTCAATGAACCAGCAGAATCCGCAGGCCCCTCAGGCTCAATCTTTGGGTGGAATGCATGTCAATGGCGCACCTCCTATGATGCAAGCTTCTATGCCAGGTGGAGTTCCAGCCCCAGTGCAGATGGCAGCTGCTGTAGGAGGACCTGGCCCTGGTTCCTTAGCCCCTGCAGGAGTTATGCAAGCCCAAGTTGGAATGCAAGGAGCTGGACCAGTGCCCATGGAACGAGGACAAGTGCCAATGCAAGACCCCAGAGCAGCTATGCAGCGGGGAGCCTTGCCTACCAACGTCCCAACTCCTCGTGGTCTTTTAGGTGATGCTCCCAATGACCCGCGGGGAGGCACTTTAATGACTGTAACTGGAGACGTAGAACCTAGAGCTTACCtgggaccaccaccaccacctcatcAGGGCCCACCCATGCACCATGTTCCTGGTCATGAAGGTCGTGGACCGCCTCCACATGACATGAGAGGAGGACCCCTAGCTGAGCCGAGACCTTTAATGGCAGAACCAAGAGGACCCATGCTAGATCAGAGGGGCCCACCTCTGGATGCCAGAGGTGGAAGAGATCCCCGAGGATTAGATGCACGGGGGATGGAGGCCAGAGCCATGGAAGCAAGAGGACTAGATGCCAGAGGACTGGAAGCCCGTGCCATGGAGGCCCGTGCCATGGAGGCCCGTGCCATGGAAGCCCGTGCCATGGAAGCCCGTGCCATGGAGGCTCgtgccatggaggccagaggcatggaCACCAGAGGCCCAGTACCTGGACCTAGAGGACCTATGCCTAGTGGAATCCAAGGTCCCAATCCAATGAACATGGGGGCAGTTGTTCCCCAGGGATCCAGACAGGTACCAGTCATGCAGGGAGCAGGCATGCAAGGAGCAAGCATGCAaggtggaagccagcctggtggcTTTAGTCCTGGACAGAGCCAAGTCACACCCCAGGATCATGAGAAGGCTGCTTTGATTATGCAGGTCCTTCAGCTCACTGCAGACCAGATCGCCATGCTGCCTCCTGAGCAAAGACAGAGTATCCTAATCTTaaaggaacagatacagaaatccACTGGGGCACCTTGAAAGGTTCTCAAAATAGCTGGCAACAAATCTGGAAATGTAATTCCATAAcatttttgaaattttgaaaacaTAATGACGTCTGCATCCGAACCTCCCCGGATGAGGCAGATGGCGCCAGGTGGAGGTCTTACATCGCCATTGCTCCAAAGGAAAGCAGTTTATTCTGTTGTCGTAGTGTGTATATTTTCTGTGACATTAAATAAACTTTGAACACAAGTTTAACATACTACAAATTGATATACATAATCCTTTTGCTTTTAAGAAGCTAACAGCAAGGATGTAAGCTTAACTGTGATTTCTAACTGCAGCATCATTCTTTAATCTTACATTGCCATAGCTCTATTCTTACTTTAGCATAAGCATTTATTCTTCTTAATGATACTTGAGAATTTCTCAGAAACAATGTTTTCAGGAACTTTGATTTTTGTTGAATTTGCTTTCAGTAAAGTAATAACACTTTACCCCGTGAAAACTTTCTAGAGTCTCAGAGCTTTCTGGGAGGAAAACAAAAAAGCACGTGGTTAGAACTAAAAATGATCAGAAGGCCAACAAGGGAAGAGCGTACCACAACAGTGTGTTTGCTTCCAGAAATGCCAGTTATCCAAGTGTGTTGTTTGGTCAGTAGCAGGTGTGAACATACATAGGACAAAGGCTGTCGTGGCACTGGTTTGCAAAAGATTGTCGTAAAGCTCTCCTGTCTAGGTAGCCCGCTTTACAAGTTTAAAAAGGCACTGGTTTTCCACATGGtcaaatttaataaagaaaaccaaGTGAACAAAATATATTCCAATCTTTCAGAAAATCACAAAGCTTTCAGCCCTGTCATCTTAACTAAATCCATTCCAAGAACTTCAAACAGAAAACCCTAAAACTTTGACATTTTCAAGTCTTTAAAGAGGACCAAGTATAGAGCACCGGACGGCAAACTGCCCGTTATGGTTGCCTGCTTCTTTCCAAGTCCGACCAACTTGGAAGGCAATTAGTGCCATTAGCCTGTGCTAACCTGCAGGTTGCCTTGCCTTTTGTTCTCCCACAGTGGCATTAAGGAGGAACTTGGTTTCTCTCCACCAGTTTGACCTCAAGACATTTGAAGAGTTGCCTTAATAATTATTAAGTTTACTAGCACTAATTGTAAGCTTATTTGTATTCCCAGATCCCTACCCTCTGCATTAGGATTATGGGCAGGTGAATTAAAATCACTACTTAAGGCATAAAAAGCATAGTAGTACATTGCTTATatgccaagaaaaagaaagcaaagatatTAAAATTGAAGGatttttctccatatatttttaatgaaaatttgcTGGATCTGTCATATTATAACCTGTCAAGAAAAGTATAAAACAACAAGCACTCCTGCCTGCCTATTCCACTCATGCCCAGTTCAACCCCGATGGATGTTAATTATGCATGCACTTCTTTGTCATTACCCTCTGTGCCTCCTGCAGAAGCAGTCCTTGCTGTGTTGGTTTTGGCAGCTGTCTTGACTTAAAAGCACCAATGTATTTAGATGCAGAGACCAAGAGCAAAGTATTTCTAGTTAGGAACTTGGGTTTTACACAACCAGTTCCAAATCAAGATAAGTGAAGCTGAAGTGATTTGGGAAACAGTTGTCTAGTAGAAACCATGTCCTGGAAAGCCAGCACATTTTCCCGAAGCCTCAGTAAACTTAATTTGCTTAGCAGGCATTCAGGTGACTAAGTTGACAAGAGCAGTGGCATCCCAATTCATCACTATGGAAACACTCAtcagtggttggttggtttgtttgctgTTATTTTTTACTGTTGTAATAATACAGTTAGCTACCCCACGTTCATGATctgcctttattatgttcaaaACTAATGACTGAAAAATAATCCCACAAATCCTTCAGGCTGTAAGTTCCTagataattgaaaacaaaaatgtgttcACTTTTGGTTAATTAATGGTACAAATTAGATGGTCTAGTGCTAACTCTATAGATTCATTCTGCTAAATGTATGAGGTCAACTGCCTGAGTACAGTGAAGTGTGGAGTTTTTTCTCCCTGAAGAGCCTGCACCTTTTTGTGTAATTCACCATAACTAACATCCCAGAGCCAGCGTGCTTATTGTCCTGGTTGATAGGAAAAATCAACATTTTTGTAGGAAAAAGAGTGACATTTAGTGGATGATTCCTGATTGAGTAAGACCTGGAAAATAGCCAAAattataacttttttctttttataatacaTTCATTAACAAActcctttaacaacaacaaaaagcataaaAGAGCTTCAGTTCAATTATCTCATGATGTACGTCAGGCCTTTCCAGTTATTCCAAACAATACAAAGTGACAATATAGTTGGCTTCTAACTATAGTACAAATTTGATTACAGTTAATATACTTAAGATATTACTAGGAAATTGTTCAATAAGCAAAAAGGAAAGTCAATTATTTTGACAAAGTAACGTGTAAATTGTTGGTCACACTGGATTAACTCATGTAACAATGTACTTAGTGGGTGATATGGGAGTGGGAAGCTTGGTCGTTCTATGTTGTTTATTTATGATTGTTGTTCTGTCGTggattcaataaatattttaaaagtca |
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