Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CSTF2P3
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr18:33822535-33822717  UCSC
Strand +
Parental Sequence XM_002720386.3
Parental seq. overlap 145 bp
Parental seq. overlap (%) 3.6%
Genomic Region Intergenic
Retrocopy Summary CSTF2P3, located on chr18:33822535-33822717, is a retrocopy of the parental gene LOC100342333. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100342333
Full Name N/A
Also known as CSTF2
Coordinate chrX:88518729-88552592
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CSTF2P1
Chimpanzee Pan troglodytes CSTF2P1
Bonobo Pan paniscus CSTF2P1
Gorilla Gorilla gorilla CSTF2P1
Orangutan Pongo abelii CSTF2P1
Gibbon Nomascus leucogenys CSTF2P1
Green monkey Chlorocebus sabaeus CSTF2P1
Crab-eating macaque Macaca fascicularis CSTF2P1
Rhesus Macaca mulatta CSTF2P1
Baboon Papio anubis CSTF2P1
Golden snub-nosed monkey Rhinopithecus roxellana CSTF2P1
Marmoset Callithrix jacchus CSTF2P1
Mouse lemur Microcebus murinus CSTF2P2
Mouse Mus musculus Cstf2P1
Rat Rattus norvegicus Cstf2P1
Pig Sus scrofa CSTF2P1
Cow Bos taurus CSTF2P2
Sheep Ovis aries CSTF2P2
Dolphin Tursiops truncatus CSTF2P3
Horse Equus caballus CSTF2P1
Dog Canis familiaris CSTF2P2
Panda Ailuropoda melanoleuca CSTF2P1
Cat Felis catus CSTF2P1
Pale spear-nosed bat Phyllostomus discolor CSTF2P1
Velvety free-tailed bat Molossus molossus CSTF2P1
Greater mouse-eared bat Myotis myotis CSTF2P1
Kuhl's pipistrelle Pipistrellus kuhlii CSTF2P1
Greater horseshoe bat Rhinolophus ferrumequinum CSTF2P1
Egyptian rousette Rousettus aegyptiacus CSTF2P1
Sloth Choloepus didactylus CSTF2P4
Chinese hamster Cricetulus griseus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CSTF2P3
TTTTAGTCCTGGGCAGAGCCAGGTAACTCCACAGGACCAAGAAAAGGCAGCTTTGATTATGCAGGTTCTTCAGCTAACTGCAGATCAGATTGCCATGCTACCTCCTGAGCAAAGGCAGAGTATTCTGATTTTAAAGGAGCAAATCCAGAAATCCACTGGAGC
>XM_002720386.3
GTAGGGAAGCGTGGTCGGTGCTGGGCACGCGCGCTGTACGGAAGTGTGCTTAGGTGCACCGGAAGCCGCAGGAAGAGAGCGATGGCGGGTTTGACTGTTAGAGACCCTGCGGTGGATCGTTCTCTACGTTCTGTATTTGTGGGAAACATTCCTTATGAAGCTACTGAAGAACAATTAAAGGACATCTTTTCTGAGGTTGGACCTGTTGTTAGTTTTAGATTGGTATATGATAGGGAAACAGGAAAGCCAAAGGGTTATGGCTTCTGTGAATACCAAGACCAAGAGACAGCACTTAGTGCCATGCGGAACCTGAATGGACGTGAATTCAGTGGGAGAGCACTTCGAGTGGACAATGCAGCCAGTGAAAAGAACAAAGAAGAGTTAAAGAGCCTTGGCACTGGTGCCCCAGTCATTGAGTCACCTTATGGAGAGACCATCAGTCCTGAGGATGCCCCTGAGTCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAGCAGATGTTTGAACTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGGAACATGTTACTTCAGAATCCTCAGCTGGCATATGCTTTGCTGCAAGCACAGGTAGTGATGAGAATCGTGGATCCAGAGATTGCCCTGAAAATTCTGCATCGCCAGACAAATATCCCAACACTGATTGCAGGCAACCCCCAACCAGTCCATGGTGCTGGACCTGGCTCTGGATCCAGTGTATCGATGAACCAGCCAAATCCTCAGGGCCCTCAGCCCCAATCTTTGGGTGGAATGCACGTCAATGGCGCACCTCCTCTGATGCAAGCTTCTATGCCAGGTGGTGTTCCAGCACCAGGGCAGATGGCCGCTGCTGTCACAGGACCTGGCCCTGGTTCCTTAGCTCCTGGAGGAGGAATGCAGACTCAGGTTGGAATGCCAGGAGGTGGACCAGTGCCCATGGAACGAGGACAAGTGCCGATGCAAGACCCCAGAGCAGCTCTACAGCGGGGCTCTTTGCCTGCCAATGTCCCAACTCCTCGAGGTCTCTTAGGAGATGCTCCAAATGACCCACGGGGAGGCACTTTACTTTCTGTAACTGGAGACGTAGAGCCTAGAGGTTACCTGGGACCACCTCATCAGGGTCCACCCATGCACCACGTCCCTGGTCATGAAAGCCGTGGCCCACCACCACATGAGATGAGAGGAGGGCCACTAGCTGAACCTAGACCTCTAATGGCAGAGCCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCTTTGGATGGCAGAGGTGGACGAGATCCACGAGGCATAGATGCACGAAGTATGGAGGCCCGAGCCATGGAGGCAAGAGGATTAGATGCACGAAGTATGGAGGCCAGAGCAATGGAAGCCCGTGCCATGGAGGCCCGTGCCATGGAGGCCCGTGCCATGGAGGTCCGTGCTATGGAAGTCCGAGGAATGGAGGCTAGAGGCATGGACACCAGGGGCCCAGTGCCCGGACCTAGAGGACCTCTGCCTAGTGGAATGCCAGGTCCCGCTCCAATGAATATGGCGGTTGGTCCCCAGGGAGCCAGACAGGTCCCAGTCATGCAGGGAGCAGGCATGCAAGGAGCAAGCCTGCAGGGTGGAAGCCAGCCTGGTGCCTTTAGTCCTGGGCAGAACCAAGTCACTCCACAGGATCATGAGAAGGCTGCTTTGATTATGCAGGTTCTTCAGCTGACTGCAGACCAGATTGCCATGCTGCCACCGGAGCAAAGGCAGAGTATCCTAATCTTAAAGGAACAAATCCAGAAATCCACTGGAGCGCCTTAAAAGGTTTTCAAAGCTACCTGGCAACAGATCTGGAAATTATTTCCATAACTTAATGTTGCAAAAAGATGACTTCAGCATCCTAACCCCTGACTGACTCAGTTGGTGCCAGGTGGAGGACTCTCATCACCTTCTCTTGAAACAAAACTGTTTAATTTTGTTGTCTTAGTTTGTATATTTTCTGTGACTTGAAATAAACTTTGAACACAATTTTAGTACACTGCAAATTGATATACATGACCTTTTTGGTTTTAAGAAGCTGAACTCCAAGGGTGAAACCTTAGATGTGTTTTCTACCCTTCCCACAGCATTGTGCTTTAATGTTATATTGTAGCTTGCTCTTTTGGTTAACCATTCTTTCTTCTTGATAATATTTGAGAATTTCTCAGAAGCAGTGTTTTCTGGAATTTAATTTTTGCTTAATTTGCTTCTAGCAAGAATAATAAGGCTTTGCCCTTTGAAAACTTTCTCAGACTTCTGAGTCTTCTGGGAGAAAACAGCACATGCTTAGAGCTATAAAATGGTCAAAAGGCCAACAAAGCAAAGAGCCTAGCACAGCAATGTGTTTAGTTTAGAAAAATATAAATATCAAAATGCATTTTGTCAATAGCAGATCTGAACATTCATAGTTCAGAGTTAAGACAAAAGATTGTGTTGGCACTGGTTTGAGTATATCAACAATACAAGACACTGTTGACATTTTCTTGTCCTAAAACTTCAGTCTTGTAGTCAGCTTTAAAAACCCACTGATTTTTCACATGTTCAAGATGAAATAACAACAGCAGAAATAGAGTGAACAAAATACATTTCATCCTGTCTTCCAGGAAATCACTAACCTGCAGCCCTACATTATAAACCAAATTTATTCTGGGAACTTAAAACATAGAAAGCCCTAAAACTTCAGACCAAATGTAGAGGACAAGCATTCAGGTTGCCTGGTAGGTGTGTCCCTGCTTCCTACCTTGCAGATAGTTCTGAATGTAATCAGTGCTCTAACCTGGGGTCGTCTTGCCTAGTATTCTCTCTCTCCTAGTGGCATTAAGGAGGAACATAGTTTCTCTCCATCAAGCCAACCTCAAGAGGTTAAAAGTTGCCTTAATAATTAGTAAAGTTCTACTGGaactatttttgatcctatttgtattctcagaatactaccccctgggTTAGGGATTATGGTCAGATCAATTGAAAACCTGGCATAGGCTTAGAGAATGTAATAGCATATTGCTTTACATGGCAAGCAAAAGAATGCAAAGATCATCTACTTGATAAACGTTGAAATGGAGGAATTTTCTACTCTTGATACATAATCATTTATAACAGAAATGTGCTGAATAAGCTGTTTCATATTAACCTAGCAAAGAAAATATGCTCAAAACAGCTGAAGAGCTTTCTGGGTATCCTGCTCATCTCCAATTAAGCTTGGATGACAATTTTGCAGAGTTTATTATTTTCATTACCTTTTATGTCCATTTCCATGAATACCAGAACCTTGATATGTTGATTTGAGACTAGAATAAAACCTTCTCATCAGGAACACCTAAGTTTCAGGGAACACTAGCATTCCAAATCAAGGGTCTTGAAGATGACATTAGTTGGTCAGCAGTTGTCTAACAGGAACCGTGTTTTTGAGGTTACATTGTGTGTTTTCCCAAAGTCTTATTAAAATTAATTTAGGTAACTGAAATCCAAGTGAACAAATTGGCAATAGCAGTGGTATCCCAATCTATCCCTACAGAAGCACCCGTAAGTGTCTTTTACTGGTGTAATAACACAGTTAGGTACCATGGGTCCATGAGCTACCTTTATTGTGTTCAGACTAGTGACTGAAAAACCTATCTCACTAATCCTTCATGTCATACCAGAGGTTCCTGAATAATTAGAAACAACCATTTGTTCATTCTTGGTGACTTAATGGTAGGATAATTGGTGCTATAATGTTAATTCAGTAGGAACATTCTCATCAATCTATAATGACTTGAACTCTGGGTACAACTAAATGTGAAGTTTTTTCCCTCTTTTGAGGGGCTTAGGGCTTCTTTTCTCCTAGTGATTCATGGTGACTACTAACATCCTAGAGCAGATGTAATTGTAGGCTAAGGTTGGATATATGACAAAAATAAAAAGCATTCTGGTAAGACAAAGAAATGGCCTTTTGCTTATGTTACTTGGTGAATGATTACTTGGTGAATAGGTAGGTAGGAACCAAAAAAAAA

Publications

PMID - Link Title