Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP9
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr14:28258187-28259069  UCSC
Strand +
Parental Sequence XM_003125136.5
Parental seq. overlap 426 bp
Parental seq. overlap (%) 44.9%
Genomic Region Intergenic
Retrocopy Summary RPS27AP9, located on chr14:28258187-28259069, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name ribosomal protein S27a
Also known as -
Coordinate chr3:85989609-85992257
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBA52P13
Chimpanzee Pan troglodytes UBA52P7
Bonobo Pan paniscus UBA52P9
Gorilla Gorilla gorilla RPS27AP15
Orangutan Pongo abelii RPS27AP16
Gibbon Nomascus leucogenys UBA52P9
Green monkey Chlorocebus sabaeus UBBP3
Crab-eating macaque Macaca fascicularis UBA52P10
Baboon Papio anubis UBA52P9
Marmoset Callithrix jacchus UBA52P16
Sheep Ovis aries UBA52P7
Dolphin Tursiops truncatus UBBP7
Horse Equus caballus UBA52P4
Panda Ailuropoda melanoleuca UBA52P13
Cat Felis catus UBA52P13
Velvety free-tailed bat Molossus molossus RPS27AP23
Egyptian rousette Rousettus aegyptiacus RPS27AP5
Sloth Choloepus didactylus UBA52P13
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP9
GGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCAC
>XM_003125136.5
CCTAGGAGGCGGGGCCTTGGGGGACGTCGGGAAAGCCTTGGACCGTCGGAGCGCCCTTCCTTTCGGATCCGCCATCTGTGGTGGAACCGCCGCCAAGATGCAGATATTCGTGAAGACGCTGACGGGCAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTATTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTAAAATACTATAAGGTGGATGAGAACGGCAAAATCAGTCGTCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGCCTGACCTATTGTTTCAACAAACCAGAAGACAAGTAATTGTATATTGGTTAATAAAAGACATGAACTAACATTTAA

Publications

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