Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP16
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr2A). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr12:123620213-123620413  UCSC
Strand -
Parental Sequence XM_024242486.1
Parental seq. overlap 167 bp
Parental seq. overlap (%) 20.3%
Genomic Region Intragenic (UBC)
Retrocopy Summary RPS27AP16, located on chr12:123620213-123620413, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as -
Coordinate chr2A:53317646-53320841
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBA52P13
Chimpanzee Pan troglodytes UBA52P7
Bonobo Pan paniscus UBA52P9
Gorilla Gorilla gorilla RPS27AP15
Gibbon Nomascus leucogenys UBA52P9
Green monkey Chlorocebus sabaeus UBBP3
Crab-eating macaque Macaca fascicularis UBA52P10
Baboon Papio anubis UBA52P9
Golden snub-nosed monkey Rhinopithecus roxellana UBA52P10
Marmoset Callithrix jacchus UBA52P16
Mouse lemur Microcebus murinus UBA52P10
Pig Sus scrofa RPS27AP9
Cow Bos taurus RPS27AP7
Sheep Ovis aries UBA52P7
Dolphin Tursiops truncatus UBBP7
Panda Ailuropoda melanoleuca UBA52P13
Cat Felis catus UBA52P13
Greater horseshoe bat Rhinolophus ferrumequinum RPS27AP17
Egyptian rousette Rousettus aegyptiacus RPS27AP5
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP16
ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTG
>XM_024242486.1
CGACCTCCTTTTTAAAATTTTCTTAGCCACGTTGATTGTACGGGAAAAGCCTTTTTAAAACATTTTTTACGTTGCTTAAACCTACCATTTCGAAAGCATTCCTAAGGCTAAAGTGAGAAATAAGCCCAGGCTAAGGAGAGGAGAAACGAGGTTCACGTTCTAGTCTGGCACCGGGTTGGATTGTCGCTGGGACGGCGGTCAGGCATTTGGTGTGGTCGCCTAAGGGGTGGGTCCTTCGGAGGGAGCTCCGGGAAACCCCGTGGGCCTGCGCGGCGTTCTTCCTTTTGGATCCGCCATCTGCGGTGGAGCCGCCACCAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTAGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCTTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAACTGTATGAGTTAATAAAAGACATGAACTAACA

Publications

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