Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP5
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_5) and its respective parental gene (in scaffold_m13_p_7). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_5:2446012-2448262  UCSC
Strand +
Parental Sequence RPS27A_x2
Parental seq. overlap 367 bp
Parental seq. overlap (%) 15.9%
Genomic Region Intergenic
Retrocopy Summary RPS27AP5, located on scaffold_m13_p_5:2446012-2448262, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_7:34426387-34428641
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBA52P13
Chimpanzee Pan troglodytes UBA52P7
Bonobo Pan paniscus UBA52P9
Gorilla Gorilla gorilla UBA52P8
Orangutan Pongo abelii RPS27AP16
Gibbon Nomascus leucogenys UBA52P9
Green monkey Chlorocebus sabaeus UBBP3
Crab-eating macaque Macaca fascicularis UBA52P10
Baboon Papio anubis UBA52P9
Golden snub-nosed monkey Rhinopithecus roxellana UBA52P10
Marmoset Callithrix jacchus UBA52P16
Mouse lemur Microcebus murinus UBA52P10
Pig Sus scrofa RPS27AP9
Cow Bos taurus UBA52P4
Sheep Ovis aries UBA52P7
Dolphin Tursiops truncatus UBBP7
Horse Equus caballus UBA52P4
Dog Canis familiaris RPS27AP8
Panda Ailuropoda melanoleuca UBA52P13
Cat Felis catus UBA52P13
Pale spear-nosed bat Phyllostomus discolor UBA52P39
Velvety free-tailed bat Molossus molossus RPS27AP23
Greater horseshoe bat Rhinolophus ferrumequinum UBA52P23
Sloth Choloepus didactylus UBA52P13
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP5
AATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC
>RPS27A_x2
CTTTCCGATCCGCCATCGACGGTGGAACCGCCGCCAAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATTACTCTTGAGGTTGAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTATACCACTCCCAAGAAAAATAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTTCTGAAATACTATAAGGTTTATACTTTTTAGGTGGATGAGAATGGCAAAATCAGTCGCCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTACTGCTTCAATAAACCGGAAGAC

Publications

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