| Retrocopy Name | PAPOLAP1 |
|
| Species | Pan paniscus | |
| Coordinates | chr7:5111806-5114375 UCSC | |
| Strand | - | |
| Parental Sequence | XM_034938092.1 | |
| Parental seq. overlap | 2228 bp | |
| Parental seq. overlap (%) | 50% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | PAPOLAP1, located on chr7:5111806-5114375, is a retrocopy of the parental gene PAPOLA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | PAPOLA |
| Full Name | N/A |
| Also known as | - |
| Coordinate | chr14:77131944-77199108 |
| Strand | + |
| Gene summary | N/A |
| Species | Scientific Name | Retrocopy | |
 |
Human | Homo sapiens | PAPOLB |
 |
Chimpanzee | Pan troglodytes | PAPOLAP1 |
 |
Gorilla | Gorilla gorilla | PAPOLAP1 |
 |
Gibbon | Nomascus leucogenys | PAPOLAP1 |
 |
Green monkey | Chlorocebus sabaeus | PAPOLAP1 |
 |
Crab-eating macaque | Macaca fascicularis | PAPOLAP1 |
 |
Rhesus | Macaca mulatta | PAPOLAP1 |
 |
Baboon | Papio anubis | PAPOLAP1 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | PAPOLAP1 |
 |
Mouse lemur | Microcebus murinus | PAPOLAP1 |
 |
Dolphin | Tursiops truncatus | PAPOLAP3 |
 |
Horse | Equus caballus | PAPOLAP1 |
 |
Dog | Canis familiaris | PAPOLAP1 |
 |
Panda | Ailuropoda melanoleuca | PAPOLAP1 |
 |
Cat | Felis catus | PAPOLAP1 |
 |
Velvety free-tailed bat | Molossus molossus | PAPOLAP1 |
 |
Greater mouse-eared bat | Myotis myotis | PAPOLAP1 |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | PAPOLAP1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | PAPOLAP3 |
 |
Egyptian rousette | Rousettus aegyptiacus | PAPOLAP1 |
 |
Sloth | Choloepus didactylus | LOC119541600P1 |
 |
Orangutan | Pongo abelii | Without Homology |
 |
Marmoset | Callithrix jacchus | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >PAPOLAP1 |
| CCCTTCGGGGTCTTCGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAGTTTTGGAAAAATTAAATAATCTGGTAAAGGAATGGATACGCGAAATCAGTGAAAGCAAGAGTCTTCCCCAGTCTGTAATTGAAAACGTTGGAGGAAAGATTTTTACGTTTGGCTCTTACAGATTAGGAGTACATACGAAAGGCGCAGATATTGACGCCTTGTGCGTTGCACCAAGTCATGTGGATCGAAGCGACTTTTTCACCTCATTCTATGCTAAACTGAAACTACAGGAGGAAGTAAAAGATTTAAGGGCTGTCGAGGAGGCATTTGTGCCAGTTATCAAACTGTGTTTTGATGGGATAGAGATTGATATTTTATTTGCAAGATTAGCACTACAGACTATTCCAGAAGATTTGGACTTAAGAGATGACAGTCTACTTAAAAATTTAGACATTAGATGCATAAGAAGCCTTAATGGTTGCCGGGTAACCGATGAAATTTTACATCTAGTGCCAAACATTGACAACTTCAGGCTGACTCTGAGAGCCATCAAACTGTGGGCCAAGTGCCACAATATCTATTCCAATATATTAGGTTTCCTCGGAGGTGTTTCCTGGGCCATGCTAGTAGCAAGAACTTGTCAGCTTTATCCAAATGCAGTAGCGTCAACTCTTGTACGGAAATTCTTCTTGGTATTTTCAGAATGGGAATGGCCAAACCCAGTGTTACTGAAGGAGCCTGAAGAACGGAATCTTAATTTGCCTGTATGGGACCCAAGAGTAAATCCCAGTGATAGGTACCATCTTATGCCTATCATCACACCAGCATACCCACAGCAGAACTCCACATACAACGTGTCTATTTCAACCAGGATGGTCATGATTGAGGAGTTTAAACAGGGGCTTGCTATCACACACGAGATTTTGCTAAGTAAGGCAGAGTGGTCCAAACTCTTTGAAGCTCCAAGCTTCTTTCAAAAGTACAAGCATTATATTGTACTTCTGGCAAGTGCATCAACAGAAAAACAACATTTAGAATGGGTGGGCTTGGTGGAATCAAAGATCCGAATCCTGGTTGGGAGCTTGGAGAAGAATGAATTTATTACACTGGCACATGTGAATCCACAGTCATTTCCAGCACCCAAAGAAAATCCTGATATGGAAGAATTTTGTACAATGTGGGTGATTGGGTTAGGGCTAAAAAAGCCAGAAAACTCTGAAATTCTCAGCATTGATCTCACCTATGATATCCAGTCTTTCACAGATACTGTTTATAGGCAAGCAGTGAATAGTAAGATGTTTGAGATGGGTATGAAAATTACTGCAATGCATTTAAGAAGAAAGGAACTTCACCAGCTGCTGCCTCATCATGTGCTTCAGGACAAGAAAGCACACTCAACAGAAGGTAGAAGATTGACAGATTTGAACGACAGCAGCTTTGACTTGTCTGCAGGCTGTGAAAACAGCATGTCTGTGCCTTCATCTACTAGCACTATGAAGACAGGCCCATTGATTAGCAGTTCTCAGGGTAGAAACAGTCCTGCCTTGGCTGTAGTGACAGCATCTGTGGCTAACATACAGGCTACTGAAATTTCCTTGCAACAGGTGAATACCAATGAAAGTTCAGGGGTTGCATTAAACGAAAGTATTCCTCACGCTGTCTCTCAGCCTGCCATTTCTCCATCACCAAAGGCCATGGTCGCCAGAGTTCTTTCTTCAACATGTCTCATAAGCCATCCAGACCTTCAGGAAACTCAGCAACAAACATATCTAATCCTATAGTTGGAGTCTAGAGGATATTCTTGCCTCATAAAGAAGAAAGGACCAAGAAAACCAAAACGGAAGAGGAGAAACTCAATACAAAGACAAGTACAACTCCATTAGAAAAATTCAGACAGCATCTTCTCTATTGGCCTCTCGGGGAACATCAGTATAGATCTTTCCGGTATCCCTGTTCTCCCTGCAAATCCAATTCCTGTTATCAAGAATTCAGTAAAACAGGTTGAATGGTTAAAAACAACCTCAAGGGTCCGTGAACAATATCTGCGAACTGAACCTGTTGTCTTCAAATACTAAGGAAGGAGAATGAGGGGTACGGGACTAGATATGACTTGAAATAGATTGAGGCTCATTTGGTAACTTCCTTTACTGAGCCAGTCTTGATCAGAAGTCCACATTAGTATGTGACAGCTAGAGGTACTGTTATTAATGTATCAGCAACAGTTACATTAACTATTTCAAAGGACTACTGCCCTTAAAATGAAAAAACCTTTCAGCTATATTTGTACCCGTGACTGACATCTGGACTGGATTTATGCTTGATGCATTGTTGGGAAAATATGCAATACAAACTGGTATCAGAATTCCTTATACTGATGAGGCACTTTATATTTTTTATTAGAAAGTAGAACTAATTTTAGATTTTTCAAATTGGTGAATTTTATTTTTCCCTGAAGAGGTTTCTTCACTATTAATCTTAAAATTGGATACCATTGTGCAGTGGTGTACTATACTTCAGAGAAAGCATAAAAGTACATCTAGCTCAGTCCCTATGAGGTAGCTGTAACCCTTTAAAATGAAAT |
| >XM_034938092.1 |
| GTTGCTGTGGTAGCGCTCGGGCGCCATGTTAGGACGAAGGGGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGggcggcagcggcggcggttgcgggggggaagtgactgggcggtgccggcgccggAGACGATGCCGTTTCCAGTTACAACACAGGGATCACAACAAACACAACCGCCACAGAAGCACTATGGCATTACTTCTCCTATCAGCTTAGCAGCCCCCAAGGAGACTGACTGCGTACTTACACAGAAACTAATTGAGACATTGAAACCCTTTGGGGTTTTTGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAACTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGTGAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGTGCATACAAAAGGTGCTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTCGTACCAGTTATTAAACTCTGTTTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACAATTCCAGAAGATTTGGATCTACGAGATGACAGTCTGCTAAAAAATTTAGATATAAGATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTATGGGCCAAACGCCACAACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATTATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTGGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATCCTGGTTGGAAGCTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAATCCCGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTGTTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATATGAAAATTGCTGCAATGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAAGCATTCAACAGaaggtgtcaaattgacagctctcaatgacagcagcctcgacttgtctatggacagtgataacagcatgTCTGTGCCTTCACCTACTAGTGCTACGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCAGAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGATCTTCAGGAAATGCAGCAACTTCAGGAAATGCAGCAACAAAAATACCTACTCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGAAGAGGAACAACTTGATACAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAATGCTAAAAAAGGAGAATGGAGGGTACAAGACTAGACATGACTGAAATGGATTTGGGTTTTTTGGTGACCTCCCTTACTGGGCTAATCAGCACTTGATCGGAAGTCCAGGTTAGTATGTGAAGCCAGGAGTACTATTATTATTGTGTTAGCAACAGTTGCATTAACTATTTCAAAAATTACTGCCTTTAAAAAAAACAACCTCAAGCTATATTTGTATTCATAATTGACATCTGGATTGGGTTTATGTTTGATGCATTGTTTGGAAAATTTGCAATACAAACTGGCATAAGAATTACTTATTCTGATGATGCACTTTTATGTATTTTTCATTAGAAAGTAGAACTAATTTTAGATTTTCAGCTTGATGGATTTTCAGTTTTTCCTGAAGAATTTTCTTCACCATTAGTCTTCAAATTGGATACTGTTGTGCAGTGGTGTACTGTTATACTTCAGAGAAAGGGTAAGAGTACATCTAGTTCAGTTCCTATGAGGTAGCTGTAACCCTTAAAAATGAAACGTCTACTCTAGGGTACATTTGACATTGAAAGAATAGTTAGGAAATAACTTGGTTTTGATAGGGTCATGATTAAGAAATGATATATTGGTTTTATTTATGGAATTGTTTTATAGTGCATACAAATCAGCGATCAGCCAGCAAATATTTTTCTTTGAGCTTGTGAAAGCTCTGTGTTCTTTTGCCTTCAATCTGTTGTCTTCAAAACAAACAAACAAAAAAAGCTTCTTGCGCCTTTCCCTCCCCTCTTTTCTTCCTTTTTCTTTTTGCTTGTATGCACAAGGTAGGACTTACTTCGTAAGAAACAAAATGCCAGTATTTTCTTAAGCCATGATGTGAAACCAATGACCCTGTGACCACATGGCACAGAACACTAAATTTTGGTCCCATGGCTGAAACTTGAGGGTGACTAAAAGTAATGCCTGTGAAACATGATATCTATCTGGGATGGCCATTTGATCTCTAAAAGGAATTTTGTACACTTCACAGAACTCCTATCTATAGTAAAATTGATTTTCAGTTTTAAATATGGGCAAAAAGGCATTTTCTCCAAGATTTTAAAACTAATTCTTATTTTTAAATGGTTTACCAAAATTTGTCAGTACATTTTACGTGTAGAAGCATTTTAAAAATCATTTCTAGCAAGCACTTGACATCTAGTCAGCTCTCTACTCCTTTATTTTGTTTTATCAAAAGATTAACAGCTCCTTTCTTTGAATAAAATAATTTCTCATAATTAAGCAGTAGAAGATCTATCTTCACAAAGTATGAGGGATGCCAGATGTTGATAAACTTACTCTTTCTTAATCTGGACAAAGTCAACTTAACAGATTTTTCTGATGAGCATGTTTTATGAATCCTCCATTGTGCTCCATTCTATCACGTGCATTTTTCATGTTAAACTGCAATTACTTAATCTCTTCCCCTATCCTTCTAAATTAATTTTCTGAAGTTGGAGTGTAGTCTTTTCCCCCTTAGGCTATGCATTAATCGAAGCTTTCTTTTCACCATGACTTTATAATGTCTAGTAAACAATATTTCTACTTCCCACATCTTTGCTTTACACAGTCACCTTGCCCTTCCTTCCACCACCGAAGAAAAAAGATGGTCATACTAACAGGTGAAATGTACAAGGTGTCTGTGTGTTTTGTGTAGCTTCAGAGTTAGATTGAAATTACCAGGCACAGATTTAGTCTTGTCATTTTGTTTACACATTGGGGAAAACAATTCAGTTTATTAAACGTTTCATGTAACTGCACCCAAGTTTTGCCAAGCTGGAAACTTGGACCTTTTCTGTGTAGTGACTTTTTAATTATAGTTTTCATAACCTGGAGATCAGACTGTTGCTTTCGCATGATGTATGTAGTGTCTCATGACTGGAGTTTGCTTTGTTTTATAGTATCTGTACTCCTTGTATTTTTCAAGAGCTATTTTGTAAACAGATGATGTATTTCTCCATTGAAAACACAATAAAAAAAAAACAGCACAATCTCA |
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