Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PAPOLAP1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr3:39892362-39895004  UCSC
Strand -
Parental Sequence XM_005562172.2
Parental seq. overlap 2279 bp
Parental seq. overlap (%) 50.9%
Genomic Region Intergenic
Retrocopy Summary PAPOLAP1, located on chr3:39892362-39895004, is a retrocopy of the parental gene PAPOLA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PAPOLA
Full Name N/A
Also known as -
Coordinate chr7:161602397-161667952
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PAPOLB
Chimpanzee Pan troglodytes PAPOLAP1
Bonobo Pan paniscus PAPOLAP1
Gorilla Gorilla gorilla PAPOLAP1
Gibbon Nomascus leucogenys PAPOLAP1
Green monkey Chlorocebus sabaeus PAPOLAP1
Rhesus Macaca mulatta PAPOLAP1
Baboon Papio anubis PAPOLAP1
Golden snub-nosed monkey Rhinopithecus roxellana PAPOLAP1
Mouse lemur Microcebus murinus PAPOLAP1
Dolphin Tursiops truncatus PAPOLAP3
Horse Equus caballus PAPOLAP1
Dog Canis familiaris PAPOLAP1
Panda Ailuropoda melanoleuca PAPOLAP1
Cat Felis catus PAPOLAP1
Velvety free-tailed bat Molossus molossus PAPOLAP1
Greater mouse-eared bat Myotis myotis PAPOLAP1
Kuhl's pipistrelle Pipistrellus kuhlii PAPOLAP1
Greater horseshoe bat Rhinolophus ferrumequinum PAPOLAP3
Egyptian rousette Rousettus aegyptiacus PAPOLAP1
Sloth Choloepus didactylus LOC119541600P1
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PAPOLAP1
CCTATCAGCCTAGCGGTCCCCAAGGAGACGGACTGCCTTCTCACCCAGAGGCTAATAGAAACCCTCAGGCCCTTCGGGGTCTTTGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAGTTTTGGAAAAATTAAATAATCTGGTAAAGGAATGGATACGCGAAATCAGTGAAAGCAAGAGCCTTCCCCAGTCTGTAATTGAAAACGTTGGCGGAAAGATTTTTACGTTTGGCTCTTACAGATTAGGAGTACATACGAAAGGTGCAGATATTGACGCCTTGTGCGTTGCACCAAGGCATGTGGATCGAAGCGACTTTTTTACCTCATTCTATGTTAAACTGAAACTACAGGAGGAAGTAAAAGATTTAAGGGCTGTTGAGGAGGCATTTGTGCCAGTTATCAAACTGTGTTTTGATGGGATAGAGATTGATATTTTATTTGCAAGATTAGCACTACAGACTATTCCAGAAGATTTGGACCTAAGAGATGACAGTCTGCTTAAAAATTTAGACATTAGATGCATAAGAAGCCTTAACGGTTGCCGGGTAACCGATGAAATTTTACATCTAGTGCCAAACATTGACAACTTCAGGTTGACTCTAAGAGCCATCAAACTGTGGGCCAAGTGCCACAATATCTATTCCAATATATTAGGTTTCCTCGGAGGTGTTTCCTGGGCCATGCTGGTAGCAAGAACTTGTCAGCTTTATCCAAATGCAGTAGCGTCAACTCTCGTGCGGAAATTCTTCTTGGTATTTTCGGAATGGGAATGGCCAAACCCAGTGTTACTGAAAGAGCCTGAAGAACGGAATCTTAACTTGCCTGTATGGGACCCAAGAGTAAATCCCAGTGATAGGTACCATCTTATGCCCATCATCACACCAGCATACCCACAGCAGAACTCCACATACAACGTGTCTGTTTCAACCAGGATGGTCATGATTGAGGAGTTTAAACAGGGACTTGCTATCACACACGAGATTTTGCTGAGTAAGGCTGAGTGGTCCAAACTCTTTGAAGCTCCAAGCTTCTTTCAGAAGTACAAGCATTATATTGTACTTCTGGCAAGTGCACCAACAGAAAAACAGCATTTAGAATGGGTGGGCTTGGTGGAATCAAAGATCCGAATCCTGGTTGGGAGCTTGGAGAAGAATGAATTTATTACGCTGGCACATGTGAATCCACAGTCATTTCCAGCACCCAAAGAAAATCCTGATATGGAAGAATTTCGTACAATGTGGGTGATTGGTTTAGTGCTAAAAAAGCCAGAAAACTCTGAAATTCTCAGTATTGATCTCACCTATGATATCCAGTCTTTCACAGATACTGTTTATAGGCAAGCAATGAATAGTAAGATGTTTGAGATGGGTATGAAAATTACTGCAATGCATTTAAGAAGAAAGGAGCTTCACCAGCTGCTGCCTCATCATGTGCTTCAGGACAAGAAAGCACACGCAACAGAAGGTAGAAGATTGACAGATCTGAACGACAGCAGCTTTGACTTGTCTGCAGGCTGTGAAAACAGCATGTCTGTGCCTTCATCTACTAGCACTATGAAGACAGGCCCATTGATTAGCAGTTCTCAGGGTAGAAATAGTCCTGCCCTGGCTGTAATGACAGCATCGATGGCTAACGTACAGGCTACTGAAATTTCCTTGCAACAGATGAATACCAGTGAAAGTTCAGGGGTTGCATTAAATGAAAGTATTCCTCACGCTGTCTCTCAGCCTGCCATTTCTCCATCACCAAAGGCCATGGTCGCCAGAGTTGTTTCTTCGACATGTCTCATAAGCCATCCAGACCTTCAGGAAACGCAGCAACAAACATATCTAATCCTATAGTTGGAGCCTAGAGGATATTCTTGCCTCATAAAGAAGAAAGGACCAAGAAAAACAAAACAGAAGAGGAGAAACTCAATACAAAGACAAGTATAACTCCATTAGAAAAATTCAGACAGCATCTTCTCTGTTGGCCTCTCAGGTAACATCAGTATAGATCTTTCCAGTATCCCCATTCTCCCTGCAAATCCAGTTCCTGTTATCAAGAATTCAGTAAAAAAGGTTGAATGGTTAAAAACAACGTCAAGGGTCCATGAACAATATCTGCCAACTCAACCTGTCATCTTCAAATACTAAAGAAGGAGAATGAAGGGTACAGAGAATGACTTGAAATAGATTGAGGCTTATTTGGTAACTTCCTTTACTGGGCCAGTCTTGATCAGAAGTCCACGTTAGTATGTGACAGCTAGAGGTACTGTTATTAATGTGTCAGCAACAGTTACATTAACTATTTCAAAGGACTACTGCCCTTAAAAAGAAAAAAACCTTTCAGCTATATTTGTACCCGTGACTGACATCTGGACTGGATTTATGTTTGATGATTTGTTGGGAAAATTTGCAATACAAACGGGTATCAGAATTCCTTATACTGATGATGTACTTTATATTTTTTATTAGAAAGTAGAACTAATTTTAGATTTTTCAAATTGGTGAATTTTATTTTTCCCTGAAGAGGTTTGTTCACTATTAATCTTAAAATTGGATACCATTGTGCAGTGGTGTACTATACTTCACAGAAAGCATAAAAGTACATCTAGTTCAGTCCCTATGAGATAGCTGTAACCCTTTAAAATGAAATGTCAACTT
>XM_005562172.2
GTGGTGGCGTCAGCAGTTCTAGAACGTTGCTGTGGTAGCGCTCGGGCGCCATGTTAGGACGAAGGGGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGggcggcagcggcggcggttgcgggggggaagtgactgggcggtgccggcgCAGGAGACGATGCCGTTTCCAGTTACAACACAGGGATCACAACAAACACAGCCGCCACAGAAGCACTATGGCATTACTTCTCCTATCAGCTTAGCAGCCCCCAAGGAGACTGACTGCATACTTACACAGAAACTAATTGAGACATTGAAACCCTTTGGGGTTTTCGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAACTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGTGAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGTGCATACAAAAGGTGCTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTCGTACCAGTTATTAAACTCTGTTTTGATGGGATAGAGattgatattttgtttgCAAGATTAGCACTGCAGACAATTCCAGAAGATCTGGATCTACGAGATGACAGTCTGCTTAAAAATTTAGATATAAGATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTATGGGCCAAACGCCACAACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATTATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTAGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATCCTGGTTGGAAGCTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAATCCCGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTGTTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATATGAAAATTGCTGCAATGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAAGCATTCAACAGAAGGTGTCAAATTGACAGCTCTCAATGACAGCAGCCTTGACTTGTCTATGGACAGTGATAACAGCATGTCTGTGCCTTCACCTACTAGTGCTACGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCAGAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGATCTTCAGGAAATGCAGCAACTTCAGGAAATGCAGCAACAAAAATACCTACTCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGAAGAGGAACAACTTGATACAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAATGCTAAAAAAGGAGAATGGAGGGTACAAGACTAGACATGACTGAAATGGATTTGGGTTTTTTGGTGACCTCCCTTACTGGGCTAATCAGCACTTGATCGGAAGTCCAGGTTAGTATGTGAAGCCAGGAGTACTATTATTATTGTGTTAGCAACAGTTGCATTAACTATTTCAAAAATTACTGCCTTTAAAAAAACAACCTCAAGCTATATTTGTATTCATAATTGACATCTGGATTGGGTTTATGTTTGATGCATTGTTTGGAAAATTTGCAATACAAACTGGCATAAGAATTACTTATTCTGATGATGCACTTTTATGTATTTTTCATTAGAAAGTAGAACTAATTTTAGAGTTTCAGCTTGATGGATTTTCAGTTTTTCCTGAAGAATTTTCTTTACCTTTAGTCTTCAAATTGGATACCGTTGTGCAGTGGTGTACTGTTATACTTCAGAGAAAGGGTAAGAGTACATCTAGTTCAGTTCCTGTGAGGTAGCTGTAACCCTTAAAAATGAAACGTCAACTCTAGGGTACATTTGACATTGAAAGAATAGTTAGGAAATAACTTGGTTTTGATAGGGTCATGATTAAGAAATGATATATTGGTTTTATTTATGGAATTGTTTTATAGTGCATACAAATCAGCGATCAGCCAGCAAATATTTTTCTTTGAGCTTATGAAAGCTCTGTATTCTTTTGCCTTCAATCTGTTGTCTTCAAAACAAACAAACTAAACAAAAAGCTTCTTGCACCTTCCCCTTCCTTTTTCTTTTTGCTTGTATGCACAAGGTAGGACTTATTTTGTAAGAAACAAAATGCCAGTATTTTCTTAAGCCATGATGTGAAACCAATGACCCTGTGACCACATGGCACAGAACACTAAATTTTGGTCCCATGGCTGAAACTTGAGGGTGACTAAAAGTAATGCCTGTGAAACATGGTATCTGTCTGGGATGGCCATTTGATCTCTAAGAGGAATTTTGTACACTCCACAGAACTCCTATCTATAGTAAAATTGATTTTCAGTTTTAAATGTGGGCAAAAAGTCATTTTCTCCAAGATTTTAAAACTAATTCTTATTTTTAAATGGTTTACCAAAATTTGTCAGTACATTTTACATGTAGAAGCATTTTAAAAATCATTTCTAGCAAGCACTTGACATCTAGTCAGCTCTCTACTCCTCCTTTATTTTGTTTTTTTCAAAAGATTAAGAGCTCTTTTCTTTGAATAAAATAATTTCTCATAATTAAGCAGTAGAAGATCTATCTTTACAAAGTATGAGGGATGCCAGATGTTGATAAACTTACTCTTTCTTAATCTGGACAAAGTAAACTTAACAGATTTTTCTGATGAGCATGTTTTATGAATCCTCCATTGTGCTCCATTCTATCACATGTGCATTTTTCATGTTAAACTGCAATTACTTAATCTCTTCCCCTATCCTTCTAAATTAATTTTCTGAAGTTGGAGTGTAGTCTTTTCCCCCTTAGGCTATGCATTAATCGAAGCTTTCTTTTCACCATGACTTTATAATGTCTAGTAAACAATATTTCTACTTCCCACATCTTTGCTTTACACAGTCACCTTGCCCTTCCTTCCACCACCGAAGAAAAAAGCTGGTCATACTAACAGGTGAAGTGTACAAGGTGTCTGTGTGTTTTGTGTAGCTTCAGAGTTAGATTGAAATTACCAGGCACAGATTTAGTCTTGTCATTTTGTTTACACATTGGGGAAAACAATTCAGTTTATTAAACGTTTCATGTAACTGCACCCAAGTTTTGCCAAGCTGGAAACTTGGACCTTTTCTGTGTAGTGACTTTTTAATTATAGTTTTCATAACCTGGAGATCAGACTGTTGCTTTCGCATGATGTATGTAGTGTCTCATGACTGGAGTTTGCTTTGTTTTATAGTATCTGTACTCCTTGTATTTTTCAAGAGCTATTTTGTAAACAGATGATGTATTTCTCCATTGAAAACACAATAAAAAAAAACAGCACAATCTCA

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