| Retrocopy Name | RGD1309748P2 |
|
| Species | Rattus norvegicus | |
| Coordinates | chrX:143682597-143682767 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001106972.1 | |
| Parental seq. overlap | 136 bp | |
| Parental seq. overlap (%) | 3.5% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | RGD1309748P2, located on chrX:143682597-143682767, is a retrocopy of the parental gene Hapstr1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Hapstr1 |
| Full Name | HUWE1 associated protein modifying stress responses |
| Also known as | RGD1309748 |
| Coordinate | chr10:6841071-6870011 |
| Strand | - |
| Gene summary | Orthologous to human C16orf72 (chromosome 16 open reading frame 72). [provided by Alliance of Genome Resources, Apr 2022] |
| >RGD1309748P2 |
| CAGAGGCTCTGGCACCTATTCCAGATCTCAGCCACCGCTGTGGCCCAGCTCTACAAAGATTCCGGGTGCCAGCAGCCAGGACTCTCTATGTGGGACCCCTTTCAGAACGCGGCCATGGCTGTGACCAGCCTTTACAAAGAAAGCGGGGATGCCTCCCAGCGAAGTTTTGAA |
| >NM_001106972.1 |
| CAGAGGCGTCGACGACGCCGCCGTAGACGACGTTCCTCAGTCTTCGGGGTGGGCTCGGCGGCGCAGAGGCCTCGGGTTGTGCGGGGTGGGTGCCGGCTCCGCGGGCTTGCACAGAGGCCTGGGCCGGCCGCCGGGCTCCTTGTCCCCGGGCCTGTCGACGACGACGCTCCCGCGGGGGCCCCGCTTAaggaggacgcggcggcggcggccaggccgcgggaggccgcggaggatggaggagcgaaaggaggagggcgaggcggagATCCAGGAGCACGGGCCGGAGCACTGGTTCTCCAAGTGGGAGCGGCAGTGCCTAGCGGAGGCCGAGCAGGACGAGCAGCTGTCCCCCGAGCTGCAGGAGGAGGCGGCGGCCGCCGCGCAGCCCGAACACAAGCAGCAGAAGCTGTGGCATCTCTTCCAGAACTCGGCCACGGCAGTGGCTCAGCTCTACAAAGATCGAGTATGTCAGCAGCCAGGACTTTCTCTCTGGGTCCCTTTCCAAAACGCAGCCACCGCAGTCACCAACCTCTATAAAGAAAGTGTGGATACCCATCAGCGAAGTTTTGATATTGGAATTCAGATTGGCTATCAGCGACGAAATAAGGATGTGCTGGCCTGGGTTAAAAAGCGCAGAAGAACTATTCGTAGAGAAGATTTGATCAGCTTCCTATGTGGAAAGGTTCCTCCACCACGAAACTCTAGAGCTCCCCCAAGACTGACTGTAGTGTCCCCTAACAGAGCTACTTCAACGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGGGAAGCCATAGCTCTGCATGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTACACATGTAAGCAGTGGACCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACTTTCATAACAGAAGAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCTCAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACCCATAAACGCAACAGAATGCTCTAAACTGCAGACACTTTCACACCCACCATGCTGCTTGAAAGCCACTCGATCCTCAACATATACTATTACTGCAAAGGAAACATGAGGCCATCTTCCCTTGTTCACTGTTTAAGAAAAGTGAATTCTCTAGTGGTTGCCATAAAAGGAAGTTCTAGGTATTTACAGTAGATGCCTCCTGTAACTATGGCTTTCTCAAACTATAATCCTAGCAGAGGACATGAAATATTGTAGTCATTAGCAAGATCATCATAGGCAAACATATATCCGTTCCAAGGCGAAAAGTGACCTTAACTGTATTTATTCTCAAAGGGAAAGGAAATATCAGATGTTTATTTGGTTATAGAATGCTTTCTTATTTTTATTTTTTGGTCCATTTCCTGCTGTGTTGAGTATTTTTACTTAAACAGTATTGCCAGGTTCCTACAATTGTCTAAAACCTTGATCTGGCTTGCAAGCCAGGTCTGCAGGCTTCCATTTTTGCAGCCACACTGAACCCACACACCTGGTTTCCATAGTGATAGCGTGCAATTTCTGATTATCAGATTATGCCCAGTTTTCAGTTTTCAATCAGTTGTAACTGGTGACTGTGAGATGTAAAGAGGTGCTATGGTGGTCATGCAGACAGTACACAATACTGAGTCAGTACACAGGACTCTTATGGAATCACTCTGTGTGGTAGTGCTCTGAAAATAGCAATAGTAAACTGTCCCCACAATACCCCTGTAGGCTTCAACTCAGTTTTAAGACAAGTACTACTTCCTATGCCGGGTACTTTACTTATGGTTAAACACAGACTGCATTCAAAGTGACCTGGAAAACAGGTCATGATCTTTGAGAGTGGGCTTCCTTTTTGGTTTGGTAGTAGTGAGAGGAAATGGACGGTGGGAGTAGATATTTATTCTTTAGGTTTTTTTTTTTTTTTAAGCATTTTTATGGATGCCCTACTGTGTGTAGTTGTCATAGTAGGTGGAAGATGATAAATGTTTTATCTGCTACTAATGTGAAAGTAACTTAAATAGCAAAACCCAACTTTTCCTGTCCCTCCATTTCTCTCAGAAATGCAGTTTGGAATTTCATTCTGGAAAAGATGAGATCGCATGGAGGTTCTCTAGATGTTAGGTAGACCCAAGTAAAAGCTCTTAGAGTCTTCTTTGGGTAAATTTAAGACCTCTTGTAGCTACAAACATTTTAGAGCATGTTTCATCTGCATTTTTACTACCTTGAACTGAATGGTAGTCTTTTTTAGAAGACTGATGTCAGCCTGCCAGGTACTGTAATTCATCCTATCCTATTATATTATATATCAAGTAGGACAGTGAAAATGTTTCCTTGCAAACTTGTAGTCCAGTTTCAGTTTCTTCTATTTTTATCCTTAGTAACCATTGCAAATCAGTGTAAGGGTTTTTCTGGTAATTACAGCACTTTGTTAAAAGTTTGCAATTTTGTCAGCCATTAATAATAACCTTTCTGTGAAGAAACCTTACTAAGTTAACCATTACTGACTGAGTGGGATGTGAATGGAATGTTAGAAATGTTGTGTGAATTGAAGTTCTGTACTCATAGATATAGCCCTTATTTAAAACAGTGAACTCCGTGTTCAGACTAGGAAGGAAAGTAAGGTATTTCTCAGTTTTTGCAAAAGTGGAGCTTTGTTTTATTTGAAAAGCAGGAAGAATTATAGCAATCTGTCATTTTACCTTAAATGGACGACCCTGTGCATCACAAGGACTTCCAGGCTTCCCTTAGGATACACCAAGACATGGAGTTCAATTTTGCTTTTCTGTGGTTGTGAATATAAATTCTGGAATTGGGTTTGACGGTGTGATTGCTCTGACAAGAAGCCAGAACTCCCATTCCTGAGGGACTTGAGACCGAGGAACATGCTTCATCTCCCTTCCTGCCTTGTTCTGTTTCCTCTGTCCAAGTTGAATAATGATATTCTTGGTTGTTTGGTTTAAGTTGGTGCTCTGAAGCTGAATCTCAGTGCCCTTTACTCTCAGTTGTCAAATTTTGATAAAACGTGCCATTTTCTTTGGTAAGAGAAAGCAGGTCTAATGTCTGCCAGAACACAATTTATATGCCGAATTATTGGCTCCATTAAACTTTTTAAAAACTTTAGCATTGGTTACTTTTTTCCATTGCATTCAACATGTAGTGTCCTTCTCAACTCTGTCCCTTTCCTCTCTGGCCAGAATAGAGTAACTGAGACCCATCAGTACAAAGTGAGGTGTTCTCTAATCTTAGCATGAGTTGGTCTGCTCTAGTTCAGAATCTTTTGGAAGTTTTCATTAGTTACGATGCAGAACATCAAAGACCCCACATACTAGTGTAGTATTAGACACTGACttttttgtttttgtttttgttttttgttttttttttcttttcttttttttggacaagtctttttgtgtagctcatgctgacttacaacatttgatcctcctgtttcagttgcctgagtgctacggtttactggcatgGTGCTTGCTTGGCCTTTTCAGCCAATCAGGAACAGAACGGGCTACTCTTGAAGCTAAGCACTTGAGCATGGGGAACAGAGTCTGATTCTTAACACAGTTCATTAGTCTTGTCATTAACTGACAGGAGTAGGCCAGGCCAAGTTCTCCACTGCAGTGTCCTGAATGTAGCTGAGAGGCTCAAGAACTTTATTACAATGCTCAATATCTTAGACAGCAAAATTAGAATATCCTCACTGTAGTTTACCTCATCGAAGTAATGGCATACACTTAAACCATAACCCAAATAAATCATCGAGAATAT |
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