Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C16orf72P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:140091899-140092185  UCSC
Coordinates (T2T) chrX:138403824-138404110  UCSC
Coordinates (hg19) chrX:139174058-139174344  UCSC
Strand +
Parental Sequence NM_014117.3
Parental seq. overlap 230 bp
Parental seq. overlap (%) 3.9%
Genomic Region Intergenic
Retrocopy Summary C16orf72P1, located on chrX:140091899-140092185, is a retrocopy of the parental gene HAPSTR1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HAPSTR1
Full Name HUWE1 associated protein modifying stress responses
Also known as C16orf72|PRO0149|TAPR1
Coordinate chr16:9091377-9121635
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C16H16orf72P1
Bonobo Pan paniscus C16H16orf72P1
Gorilla Gorilla gorilla C16H16orf72P1
Orangutan Pongo abelii C16H16orf72P1
Gibbon Nomascus leucogenys C18H16orf72P1
Green monkey Chlorocebus sabaeus C5H16orf72P1
Crab-eating macaque Macaca fascicularis C20H16orf72P1
Rhesus Macaca mulatta C20H16orf72P1
Baboon Papio anubis C18H16orf72P1
Golden snub-nosed monkey Rhinopithecus roxellana C20H16orf72P1
Marmoset Callithrix jacchus C12H16orf72P1
Mouse lemur Microcebus murinus C17H16orf72P1
Mouse Mus musculus 1810013L24RikP1
Rat Rattus norvegicus RGD1309748P2
Chinese hamster Cricetulus griseus C7H16orf72_1P1
Pig Sus scrofa C3H16orf72P1
Dolphin Tursiops truncatus C15H16orf72P2
Horse Equus caballus C13H16orf72P1
Dog Canis familiaris C6H16orf72P1
Cat Felis catus CE3H16orf72P1
Egyptian rousette Rousettus aegyptiacus C16orf72P1
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C16orf72P1
AAGCAGAAGCTGTGGCACCTCTTCCAGATCTCGGCCACCGCCGTTGCTCAGCTTTACAAGGATTCTGGGTGCCAACAGCAAGGACTTTCCATGTGGGACCCCTTCCAGAATGCGGCCATGGCCGTGACCAGCCTCTACAAAGAGAGCGGGGATGCCCACCAACGAAGTTTTGACTTGGGTGTCCAGGTTGGCCACCAGCGTCGCATCAAAGATGTGCTGGAGTGGGTGAAAAAGGGCCGGAGCACCATTCGTCGCGAAGACTTGATTAGCTTCCTGTGTGGCAAAGT
>NM_014117.3
GCTCAGTCTTGGGGTGGGCTCCGCGGTGCAGGCCGAGCTGCGCGGAGGGCTCGGCGATCAGCGGCGGCGGCGGCAGTGGGGAGGCCGCAGCGCCATGGGGGGGCGTTAGACAGGCTGCGGCGGCCGAGGCGAGGGGCGGCAGCGGTTATCTGGTCCGCGGCGACCTTCGGCCGGGCCCGGGGGTGGGAAGGCCTGGGGCGGGGGTCGTCCCTGGTTGCACGGGGCCGCGGGGCGGGGCTCGCCGGCCGTCGGGGTGCAGGAGGCCTGGGCCGCTGAAAGGAGAAGGCGCCGTCGGTCGCCAGGCCCTGCCGCCGGGCCGCTTGACGACGACGCTCCCGCGGGGGCCCCGCCTgaggaggacgcggcggcggtggcggcgaggccgcgggaggccgcggaggatggaggagcggaaggaggagggcgaggCCGAGATCCAGGAGCACGGGCCCGAGCACTGGTTCTCCAAGTGGGAGCGGCAGTGCCTGGCCGAGGCCGAACAGGACGAGCAGCTGCCCCCCGAGCTGCAGGAGGAGGCGGCGGCCGCCGCGCAGCCCGAGCACAAGCAGCAGAAGCTGTGGCACCTCTTCCAGAACTCGGCCACCGCCGTGGCCCAGCTCTACAAAGACCGAGTGTGTCAGCAGCCAGGACTTTCTCTCTGGGTCCCCTTCCAAAACGCAGCCACCGCCGTCACCAATCTCTACAAAGAAAGCGTGGATACCCATCAACGAAGTTTTGATATTGGAATTCAGATTGGCTATCAGCGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAACGCAGAAGAACTATTCGTCGAGAAGATTTGATCAGCTTCCTGTGTGGAAAAGTTCCTCCACCACGAAACTCTAGAGCTCCCCCAAGACTGACTGTAGTGTCCCCTAACCGAGCTACTTCAACGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGGGAAGCCATAGCTCTGCATGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTACACATGTAAGCAGTGGATCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACTTTCATATCAGAAGAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCTCAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACCCATAAACGCAACAGAATGATCTAAACTGCAAACATTTTCACACCCACCATGCTGCTTGAAAGCCACTTGATCCTCAACATATACTATAATTGCAAAGGAAACATGAGGCCATCTTCCCTTGTTCACTGTTTAAGACAAGTGAATTCTATAGTGGTTGCCATAAAAGGAAGTTCTAGGTATTTATAGTAGATGCCTCTTGTAATTATGGCTTTCTTAAAACTATAATCCTAGCAGAGGACATCAGATATTGTGTAGTCGTTAGCAAGATCATCATAGGCAAACATATATCCGTTCCAAGGCTAAAAGTGACCTTAACTGTATTTATTCTCAAAGGGAAAGGAAATATCAGATGTTTATTTGGTTATAGAATGCTTTTTTTTTTTTTGGGTCCATTTCCTGCTGTGTTGAGTATTTTGCTTCAACAGTATTGCCAGGTTCCTAAAATTGTCTAAAAACATGATTTGGCTTCCATTTTTGCAGCTGCACTGTACCATGCACCTGGTTTCTATATAGTAACAGTGTGCAATTCTAATTATTGGACTGTGCCCTGTTTTTAGTTTTCAAATCAATTTCTAATTCTGGTGATTGTGTGATGTAAAGAGGTGCTATGATGGTCATGCAATTAATACTAAATATTGAATCAATGCCCAGAGCTTTATTGGATTCACTTTGTGTGTGTTAGTGCTCTAAAGTAGCAGTATTATTATTAAACTGTCCCCAGAGTAACCCTGTAGGCCTAAAGTACTCAGTTTTAAGACAAACACTACTTCCCATGCGGGGTACTTTCCTTATGGTAAATGTAAACATGTAGACTGCATTCGAGGTGACCTAAAGTAGAGAGGTCATGAACTTTGAGAATGGGCTTCCTTTTTGGTTCAGTATTAGTGAGAGGGAGAGGGAGATGGATGGTGGGGTAGGTTTTCTAGTCTATCATTTTACATTTTTCATGGAGTCCCTGCTTAGTGCAGTTTCCATTGGAATGGGTGGAAGATGATAAAGCTCTCTTTTTTATCTACTAATAATGTGATTGCAACTTAAAATAGCAAAACCCAACTCTCCCTGTCCCTCCAATCCCTCTCCTAAAAAGTTCAGTTTGGAATCTCATTCTGGAAAAGATGGAATCGCATGGAGATTCTCTAGCTGTTAGGTAGACCTAAATAAAAAGTTCTCAATAGATTCCTCTTTTGAGTAAATATAAGACCTCTTGTAGCTACAATGTTTTAGAGCATGTTTCATCTTCATTTTTAATATCCTGAACTGAATGATAGTGTTTTTTTAGATGAAGAACTGATGTCAGCCTGCCAGGTACTGTAatttattctatcatattattatattatatATCAAGTAGGACAGTGAAAAATGTTTCCTTGCAAACTTGTAGTCCAGTATCAGTTACTTCCTATTTTTATCCTTAAAAGACCATTGCAAATCAGTGTAAGGGTTTTTCCAGTAATTACTCACAGCACTTTGTTAAAGTTTGCAATTTCTTCAGCCATTTAATAATATCTTTCTGTGAAGAAACTTTGCTGAGTTAACCATAAATGTTCATTCATTGACTGGGTGGGATGTGAATGGAATGTTAGAAATGTTGTGTGAATTGAAGTTCTGTATTCATTATAGATGTAGCCCTTATTTAAAAAAGTGAATTCCATACTAAAACTAGGAATGAAAGTGAGAGATTTCTAAACTTTTGCGAAAGTGGGTCATTTTTTGTTTGACTATAATAGCAGGAAGAATTATAGCAATCTGTCATTTTACCTGAAACAGACAAGCCTATGTATTATGAATACTTTCAAGCTTCCCTTTGGAATATACAAGACATGCGTTTGGAGTTACCTTTGTTTTTCTATCGTAAATTTAGATTCTGGAATTGGGGTTTGGTGGTGCAATGTGTTGCTCACAAGTGGCCAGAACTCCTATTCCTAAAAGGATTTTGAGATGGAGGAACACATATTTAATTCCCCTTTATGCCTTGGTTCTTGCTCCTCTTTCCACGTTGGATAACAATTTTTTGGTTGTTTTGTTTAAGTTGGTGCTCTGAAGCTTAATCTCAGTACCCTTTACTCTGAATTGTCAAATTTTGATAAAACGTGCCATTTTCTTTGGTAAGAGAAAGCAGGTCTTAATGTCTGCCAGAACACAATTTATATGCCTTATTGGCTTCATTAAACTTTTAGAAAACTTTAGCATTTGTTACTTTTTTCCATTGCGTTTACTTTCAAATGCACCTAATGAATTTGTCACCCAGTCGCAACTTTTCCCTTCTCTGTCCCATTGCTTTCTCCTTTCCCCGACGCACAGAATAAACATGAAGCTCAGCAGTAGAAGCGTAATGATTTCCCTCAGGAAAAACTTCTGACAGCTAGGTTTTTCAAGGGTTTCCCTGTGCTAGCTGAGATGCAAAACAAATCATGGAAGATTGCATACCTGTGTGGTATTTTAAAAACAAGTTGACTTTTTCAGTTTCTTGAACGGTTAAGGGTGGATTTAAAAACTAGACAGTTTAGTTTTGGGGAACAGAAGCTCTCTTCGTCTTAAGCCAGATTCTCTGATTCTTTTAGACGTCATAGCTCCTTAGTTCTGCTCCTGTCGCCCTAACTTGGCATGGGCAAGTTGAAGTTCATCCTTAGACTGCAGCGTTCTGAGCATGGCTGAAGTATTAAAATGTTTAATATTTTTTAGAGCAAAATTGTTGGAAAGCATTTGGCTGAATCTAAAGACCTGCAGTCAGATTCTTCAATGTGGTTTACCCAACTGGAGTAGTGATAAACACCTTAATCATAAAATGAATAAAAACAAAAAAACCATGGGGCTTGTCTGCAGTTTTGTTTTGGTCATCACATCTGAATAACTTTTTGATGCAATCAAATGAAGTTTAGGCTTTTAAAAAAGAATTAGCTTTCTAAATGTTTTTTTCTAAGGGCTACTGGAACTCATTAAACTCGAATAATTGTGGCTTTGGGCCTGAAGATTTCCATTCAACAGTGAAAACTGGCTAACTTCCTTTATAGTGAGAGGGATGGCCAACATCCAACCCAGAGGGCTAGTCAGCCTCAGAGGCCAGTGCAAGACGCCAAGAGATGATTTTGAAATGGGGCCATAAGTTTAGAAAATTATGAACAGAATGATTGAGTTTTTGGCCTGGCTACTACCTCTAGTGGTGACTACGTCAGCAGATTAATCTCATTGCATTTTACTTTATGTAGTATGTTGTAACCTGGTGCTTCATTCATTAGATTGGTGACTGAGGTATTTAGTCATGGTGAGGATGGGAATCTTCAGAGATACATTCTGGATTTGTGGAATAAAGTGACTAGAAAGGTTCTTCCAGAGCAACCCCTTGTTTAAAGTTATAAGTGTTTATGGTACCTGCTACCCCTTCTGGAAAGTTGTCGGCTTTGATGGTTTAGATGACCTTACCCCATAAGGCCAGCTTCTAGCCTCCCTTTGGAATATTTGAGGTGTGTGATGTTTTAGTGGGGGCAGCATTTGAGAGACGAGCAGGCCCGAGCACCCAGGCTGGCTGTCAGACCGTGTGTTGTGCTGTTGGGTTTGATGGGATGAGATATCCAGGGTTTTACTTCCTATAATGGGATCTGCAGGCTCCTTGTGAAGTTCAGTTAGACAGTAGCCTGTGACGTAGCAAGTCAAGTTTTCGATGGCCCCTCATTTTTTTTTTATTTAGTGCTTAAAAAAAAGATTTAAAACAGCAAAAATCAAGCCACACAGCAGCTTATAGTATATACAGGTCTTTTATACATTAGAAGTAATATGGTGAAATCttttttttttttttttttttttgtgatggagtttcactctctcacccaggctggagtgcagtggcacgatcttggctcaccacaacctctgcctcctgggttcaagcaattttcatgcctcagcctcccgagtagctggtattacaggtgcctgccaccacacctggctattttttgtatttttgttagatacggggtttcaAATATGGTGAAATCTTGTGACAGAATAGTATTCCCTTGTACAGATAAGCCTTGATGCAGGTTACAGATTTTTTATAATTAGTAATGCAGCAGTGGAGTGttttctttttcttgttttttgagatggagtctctgtcgctggagtgcggtggtgcgatcccagctcaccgcaatctctgcctcccgggttcaagcgattctcctgcctataactacaggtgtgcgccaccacgcccagctaatttaattttgaatttttagtagagacgggatttcaccatgttggccaggccagtcttgaattcctgaccttaagtgatctgcccgccttggcctccccaagtgctgggattacaggcatgagacactgcgcctggccTATGTTTTAAGTTtctctatgacaaatttctgtagatgaactatctgggtcaaaaaaattcatctataaaatactgatgggtcttgccaaagtaccttctgcaaggtaccagttaatacttccatcagaaagtaagagcgcctgttcccttacatcgtagccagtgttgggtattTATACTTCCTTTGGCAGAAGTGACCTTTCAGTTTTAATCTGTTTTTTACCTGCTCGTATGAAGGAAGACTTTTTGCTTGATATCacgtgggtttgaatgctgactctactaccaggtctgggaacctaggtaagtttgcctctctgggctgttttctcatctgtgaaatAAATAGAAAACATAGAAAAATAAATTAAAAAATGTGAA

Publications

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