Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name RHOAP1
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Plot displaying the genomic locations of a retrocopy (in chrA3) and its respective parental gene (in chrA2). Each line represents a retrocopy.
Species Felis catus
Coordinates chrA3:127191720-127192065  UCSC
Strand -
Parental Sequence XM_023248788.1
Parental seq. overlap 273 bp
Parental seq. overlap (%) 15.2%
Genomic Region Intergenic
Retrocopy Summary RHOAP1, located on chrA3:127191720-127192065, is a retrocopy of the parental gene RHOA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RHOA
Full Name ras homolog family member A
Also known as -
Coordinate chrA2:18410035-18473944
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RHOCP1
Chimpanzee Pan troglodytes RHOCP1
Bonobo Pan paniscus RHOCP1
Gorilla Gorilla gorilla RHOCP1
Orangutan Pongo abelii RHOCP1
Gibbon Nomascus leucogenys RHOCP1
Green monkey Chlorocebus sabaeus RHOCP1
Crab-eating macaque Macaca fascicularis RHOCP1
Rhesus Macaca mulatta RHOCP1
Baboon Papio anubis RHOCP1
Golden snub-nosed monkey Rhinopithecus roxellana RHOCP1
Marmoset Callithrix jacchus RHOCP1
Mouse lemur Microcebus murinus RHOCP1
Mouse Mus musculus RhocP1
Rat Rattus norvegicus RhocP1
Chinese hamster Cricetulus griseus Rhoc_1P1
Rabbit Oryctolagus cuniculus RHOCP1
Pig Sus scrofa RHOCP1
Cow Bos taurus RHOCP1
Sheep Ovis aries RHOCP1
Dolphin Tursiops truncatus RHOCP1
Horse Equus caballus RHOCP1
Dog Canis familiaris RHOCP1
Panda Ailuropoda melanoleuca RHOCP1
Pale spear-nosed bat Phyllostomus discolor RHOCP2
Velvety free-tailed bat Molossus molossus RHOCP1
Greater mouse-eared bat Myotis myotis RHOCP1
Kuhl's pipistrelle Pipistrellus kuhlii RHOCP1
Greater horseshoe bat Rhinolophus ferrumequinum RHOCP1
Egyptian rousette Rousettus aegyptiacus RHOCP1
Sloth Choloepus didactylus RHOCP1
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RHOAP1
CATGGCGGCCATCCGCAAGAAGCTGGTGGTGGTGGGCGACGGCGCGTGCGGCAAGACGTGCCTGCTGATCGTGTTCAGTAAGGACGAGTTCCCCGAGGTGTACGTGCCCACCGTCTTCGAGAACTATGTGGCCGATATCGAGGTGGACGGCAAGCAGGTGGAGCTGGCGCTGTGGGACACGGCGGGCCAGGAGGACTACGACCGCCTGCGGCCGCTCTCCTACCCAGACACCGATGTGATCCTCATGTGCTTCTCAGTGGACAGCCCCGATTCGCTAGAGAACATCCCCGAGAAGTGGGTGCCCGAGGTGAAGCACTTCTGCCCCAACGTGCCCATCATCCTGGTG
>XM_023248788.1
TCGGTTCTCTCGTTAGTCTGCCTCCGTCTCCTCAGCCACCCGCCCTAGTCTCCGAGCTTGCTACTCGCGGACAGGCGTCCTTGGCGTGGAGAGGTCGGATTGCGAGTCGTCGCCTGAGCATGGCTGCCATCCGGAAGAAACTGGTGATTGTTGGTGATGGAGCCTGTGGCAAGACTTGCTTGCTCATCGTCTTCAGCAAGGACCAGTTCCCAGAGGTGTATGTACCCACAGTGTTTGAGAACTATGTGGCAGATATTGAAGTTGATGGAAAGCAGGTAGAGTTGGCTTTGTGGGATACAGCTGGGCAGGAAGATTATGATCGCTTGAGGCCTCTCTCCTATCCGGACACTGATGTTATACTGATGTGTTTCTCCATTGACAGCCCTGATAGTTTAGAAAACATCCCAGAAAAATGGACTCCGGAAGTCAAGCACTTCTGTCCCAATGTGCCCATCATTCTGGTTGGAAACAAGAAGGATCTTCGGAATGATGAGCACACAAGGCGGGAGCTGGCCAAGATGAAGCAGGAGCCGGTGAAACCAGAAGAAGGCAGAGATATGGCAAACAGGATTGGTGCTTTTGGGTACATGGAGTGTTCAGCAAAGACCAAAGATGGAGTGAGGGAGGTTTTTGAAATGGCCACGAGAGCCGCTCTGCAAGCCAGACGTGGGAAGAAAAAATCTGGGTGCCTTGTCTTGTGAAACCCTGCTGCAAGCACAGCCCTCATGCGGTTAATTTTGAAGTGCTGTTTATTAATCTTAGTGTATGATTACTGGCCTTTTTCATTTATCTATAATTTACCTAAGATTACAAATCAGAAGTCATCTTGCTACCAGTATTTAGAAGCCAACCATGATTATTAATGATGTCCAACCCACCTGACCACCGGGGTCCTTCTGACACCGCTCTTTAACAGCCCTCCTCTGCACTCCCACCTGACACACCAGGCGCTAATTCAAGGAATTTCTTAACTTCTTGCTTCTTTCTAGAAAGAGAAACAGTTGGTAACTTTTGTGAATTAGGCTGTAACTACTTTATAACTAACATGTCCTGCCTGTCATCTGTCAGCTGCAAGGTACTCTGGTGAGTCACTACTTCAGAGCTTTACTCCTTAACAGATTATATTGGCATAACTCTGTGATGGGCATCCAATTTTTTTGAAAATGTGCTCATCCAGAAAGGTCCAAGTCCATGCAGCTGTGGCAGAGTTACAGTTCCGTGGTTTCATGTTAGTTACCTTATAGTTACTGTGTAATTAGTGCCACTTAATGTATGTTACCAAAAAATAAATATATCTACCCCAGACTAGATGTAGTATTTTTTGTATAATTGGATTTCCTAATACTGATATTTGTCATCCCTGCAGAAAGTGTATTGGTTTTTTAAAAAAGAAAGTGTATTTGAAAATAAAGTCAGATGGAAAATTCATTTTTAAAATTCCCGTTTTGTCAGTTTCTCTGATAAAAGATGGCCATATCACCTGTTTTCGGCCCCACATATCCTAGTACCCCCTCCCAAGAGCTGGGCTAAAGAAATAGGAATTTGGTTTCATGCCTGAGGCATTTAGACACTTCAGAAGGTGGCATAGCCTGTCTCACCTGGACTGCAGGCTCTGGCTCTAGTTCACAGGCTCCCTTTCCTCACTGTATCCAGGTTCCCTCCCAGAGGAGCCGCCAGTTCTCTTAGGCGGCACTCAGTTTCTCACTTCTCTCCAGCTGACTAAACTTTTTTTCTGTACCAGTTAATTTTTCCAACTACTAATAGAATAAAGGCAGTTTTCTAAACTTCCTGTA

Publications

PMID - Link Title
No publications available for this retrocopy