| Retrocopy Name | Hpcal4P1 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr5:147302992-147303275 UCSC | |
| Strand | - | |
| Parental Sequence | NM_017357.1 | |
| Parental seq. overlap | 230 bp | |
| Parental seq. overlap (%) | 34.4% | |
| Genomic Region |
Intragenic (Hpca) |
|
| Retrocopy Summary | Hpcal4P1, located on chr5:147302992-147303275, is a retrocopy of the parental gene Hpcal4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Hpcal4 |
| Full Name | hippocalcin-like 4 |
| Also known as | NVP-2|Nvjp2 |
| Coordinate | chr5:140870127-140882242 |
| Strand | + |
| Gene summary | Enables calcium channel regulator activity; protein C-terminus binding activity; and protein domain specific binding activity. Predicted to be involved in signal transduction. Orthologous to human HPCAL4 (hippocalcin like 4). [provided by Alliance of Genome Resources, Apr 2022] |
| >Hpcal4P1 |
| AGAACACCGAGTTCTCTGAGCTGGAGCTTCAGGAGTGGTACAAGGGCTTCCTGAAGGACTGCCCGACTGGCATCCTCAACGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGCGATGCCTCCAAGTTCGCCGAGCATGTCTTCCGCACTTTTGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATCGCTCTGAGCGTGACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTACGACCTGGACGGC |
| >NM_017357.1 |
| TTTCACTTCAAGCCGAGTCCCCAGTTCAAGAAGGAGGTACGGCCGCCTCCTTACCCCCAGCTCAGGCCCACCATGGGGAAGAACAATAGCAAGCTGGCCCCTGAGGAGCTGGAAGATCTGGTCCAGAACACGGAGTTCAGCGAGCAGGAGCTAAAGCAGTGGTATAAGGGTTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTTCAGCAACTCTACATCAAGTTCTTTCCTTACGGAGACGCCTCCAAGTTTGCACAGCATGCTTTCCGCACCTTCGACAAGAACGGCGATGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTTTCTGTCACCTCCCGTGGCAGCTTTGAGCAGAAGCTCAACTGGGCCTTTGAGATGTACGACCTGGACGGTGATGGACGCATCACACGGCTGGAGATGCTGGAGATCATTGAGGCTATCTATAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGATGGGCTCACGCCCCAGCAGCGTGTAGACAAGATCTTCAAGAAGATGGACCAGGATAAGGATGACCAGATTACGCTGGAGGAGTTCAAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTGTTGCAATGTGACATGCAGAAGTAGGGCTGGTGAGGGGCA |
| PMID - Link | Title |
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