Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HPCAL4P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_5) and its respective parental gene (in scaffold_m19_p_5). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_5:153739518-153739724  UCSC
Strand -
Parental Sequence HPCAL4_x1
Parental seq. overlap 179 bp
Parental seq. overlap (%) 3.6%
Genomic Region Intragenic (HPCA)
Retrocopy Summary HPCAL4P1, located on scaffold_m19_p_5:153739518-153739724, is a retrocopy of the parental gene HPCAL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HPCAL4
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_5:148282740-148294451
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HPCAL4P1
Chimpanzee Pan troglodytes HPCAL4P1
Bonobo Pan paniscus HPCAL4P1
Gorilla Gorilla gorilla HPCAL4P1
Orangutan Pongo abelii HPCAL4P1
Gibbon Nomascus leucogenys HPCAL4P1
Green monkey Chlorocebus sabaeus HPCAL4P2
Crab-eating macaque Macaca fascicularis HPCAL4P1
Rhesus Macaca mulatta HPCAL4P1
Baboon Papio anubis HPCAL4P1
Golden snub-nosed monkey Rhinopithecus roxellana HPCAL4P1
Marmoset Callithrix jacchus HPCAL4P1
Mouse lemur Microcebus murinus HPCAL4P1
Mouse Mus musculus Hpcal4P1
Rat Rattus norvegicus Hpcal4P1
Chinese hamster Cricetulus griseus Hpcal4_1P1
Pig Sus scrofa HPCAL4P2
Cow Bos taurus HPCAL4P1
Sheep Ovis aries HPCAL4P1
Dolphin Tursiops truncatus HPCAL4P1
Horse Equus caballus HPCAL4P1
Dog Canis familiaris HPCAL4P1
Panda Ailuropoda melanoleuca HPCAL4P1
Cat Felis catus HPCAL4P2
Velvety free-tailed bat Molossus molossus HPCAL4P1
Greater mouse-eared bat Myotis myotis HPCAL4P1
Kuhl's pipistrelle Pipistrellus kuhlii HPCAL4P1
Greater horseshoe bat Rhinolophus ferrumequinum HPCAL4P1
Egyptian rousette Rousettus aegyptiacus HPCAL4P1
Sloth Choloepus didactylus HPCAL4P1
Rabbit Oryctolagus cuniculus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HPCAL4P1
AGAACACGGAGTTCTCGGAGCTGGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACAGGCATCCTCAACGTGGACGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGTGACGCCTCCAAGTTTGCTGAGCATGTCTTCCGCACCTTCGACACCAACAGTGACGGCACCATCGACTTCCGGGAGTTCATCA
>HPCAL4_x1
ATTCAAGAGCTGGGAGGCGTCTCCGGCGCGGACCTTGGAGAATCTGGCCGCCAAGCTGCGAGCCAGTCTTGGTCCCCGAGGCCGGCTGAGGCTCGGAGCCATCCAGCGACTCGGCGAGCGGCCTCAGGCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCAGAGGTGCTGGAGGACCTGGTTCAGAACACGGAGTTCAGCGAGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTCCAGCAGCTCTACATCAAGTTCTTCCCCTACGGCGACGCCTCCAAGTTTGCCCAGCACGCCTTCCGCACCTTCGACAAGAACGGCGACGGCACTATCGACTTCCGGGAGTTCATCTGCGCCCTTTCGGTCACTTCCCGCGGCAGCTTCGAGCAGAAACTCAACTGGGCCTTCGAGATGTACGATCTGGACGGCGACGGGCGCATCACGCGCCTGGAGATGCTGGAGATCATCGAGGTGCGCTGGCTGGGGTTGGATCCTAGAGGCCAGGATGTGCTGGGGTGGCGCGCCCCCTGTCTTCGTAGCCGGGCCCTTCTCTGGTGCCGCCGTCTCCGGCCACGCTCCTCCCGGGCCTCCGGAGCCTCCCTGGCACCCCCACTCAGCCCCCATCCCGCCTCGCAGGATTCAGTGGCTAAGTAGCATGGGTTGGATGCTTGGTGTTGGACAGGCTATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGATGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGATGACCAGATTACCCTGGAGGAGTTCAAGGAGGCGGCCAAGAGCGACCCATCCATCGTGCTGCTGCTGCAGTGCGACATGCAGAAATAGAGAGTGGAGGCTGGTGAGGGGCAGGGCCCCTGGCCAGGAGAAGCGTTAGCCACCTCCCGACCCCATGATCTCTCTGGTTGGCCCTTCCCCAGGGGGAGGGGTACTCCAGCTTCACCCTCTGGCCCACCCACCCCTCTGTGCAAGCCCTTGCTCCCTCAGTCAAGATCTTTGAGGGACCACCTCACCCTGGAAAAGAGGCAGATCCTCAGGTATCCTGTGTTCTAGCACCACCCCCAGTCTTGGCCCAGAACTAACACCTGCTGGGCATAGGGGAGTTGGCTTTTGCCCTTACTGGTAGGGTTAAGGAGGGAGTATGGTGTTCTGCTTTGAAAGTCTGTTCTTCCTGGGATTATGCTTTATAGAATGTGATCCCACACACCCCAGTTAAAGGGCCAGATTGGCTCTGTCCTGTGCTGAAGACCTAGATCCCTTAAAGGTGGTCTCTGCCCTGCCCCCTCAACTCTACCCTTCTGGCCCTGTCTTTGGAGCATTCATTCAGtccttttttcagctaatacttactgagcacctgttcaatgccaggcacctgcaggtgctgaggatatggtggcctacaggacacattttgtgttccctggaagctcctagagcagtgaggCGGGCTTCCAGTGGTCAGAGTCACAGATGAGGGTGTCGAACACAGCTGAGCCGAGGGTGTGGTAAAGCTGGTTAACTTGAGAGGAGCTATTATATTGAATCTTTCCACTCAGTCCTACACAGAGCCGCAGAAGGATGAAATGAAAAGTGTTTGGAGGTCTAGGAACCATGTGagtggaagttttaagaaaaatttaaatttatgtaatacttattttttcagtacccttaaaaggagctgaagtcattttattagtctagggtattaaaacatactttatattactcgatttcttataaaatgatcaAATGAATGTAGAAATGCCACTTTTCACGGGGAAAAAGAGCTGAGAAAAAAAGAGGGAAAATACCACTAAACTCACCAGAAACACCTTTTCTTATCAGGCTAAATCCTCAGCTGCACCATCAGCAGCTTCCTTTCTGATGATCTCTTTCAGCGCAGTGAGCAACGCTGTTGCACACCCCCCTGGTTGGGTGCTGTCTGCAGAAACACACACACACACAAGATTTGCCAAGATCGAGGCTGTGCCTTTCCCACATCTTGGTAGTTCCTTGGTGGATTTGGTCTACTTTCAAGGATGGGCTTGTTCTTTCACTGCTACAGAAGCAGAAGGAGCTAGAAGAAGAGGAAGGACCACCTGGCCACTCTTTAGGCTGccaggctgcgtttatggaccaaatgcttagaaacgtactgggcatgctccatttgaaaagctttctctaaccccaaatctgaaatctgccaggtaatttgtcttctcagtgcactggctttgctttccaacgtctgctttctgattctggatccatgagctacacagctgcatgctttgctagaaaactcatcttgcttcttcaagtctttcactttacactctcctgtacctgtggtcagaaattagctttgacgtgcaatgacagttgatttcctcttgaaccgctggtgaaaacagtctagtacacaggtgcTGCCAGCCCAGGGTGGGAGCAGGGAGTGGTTGCTGAGTCGGGGGGGTGTGGATTGTATTAGCAGGAAAGCAATGCAGCACACATTTTACTTCTAGGTGTTCACCTTCCCTCCCTCtctgcaggtggaaactctagggcacaggtggcaaacacgaagtccaagggccaaatctggccctccaccttgtgttgtcctgcccggcaccttgtttctacccagtggcagcactgagctgttgcttaactgttaaggagtagttacatttatacagccctaaaatgacatttggcccttggaaagcaatcataaggctgatgtggcccccggttatgatgagtttgacacccctgcTCTAGGGGATGCTGACCTTTGGTCCCCAACTCTTTTGGGCCTTTCTTCTTGCTGCTCTTGAAGGTAGCAAGGCCGCTGGATTCCCACCCTCTTTCTCTCCTCCTAGCACCAGCCACATGGTAAGGCTGGGGCACTCACATCCTCAGGCAGTAACCAGCGTGCTTTTATCTAGTGACACCTCGGACGATGTCCCGTTGCTCCCAGGAGCTGCCCACTGGGCGTGTCTTGTGCTGTCAGTGCACCACAGGTGCAGATACTCAACAGCCTGGCTCAGCTGACACTTCCGATGGAAGGCTTTTTACAAAGTGGGGTTCCTCTCCCCCAAATGTTGAATCtaacccacctcccaatcacacagaacttacggcttttgaaggcttgccacctactccatcccattctacactcaaagcctagggaagtaaggattttcattccctttctccagacttggaaactgaggcacagtgcgtccatggtgcaaaagcacatagtcaggaatgggcacagcaccaagacttgaacccaaggccttAAGCAGGGTTCTTCCCTTCAGAGTCTTTCTCAGGCTCATTTGATTCTGAGTTGTACGGAGGTCAACTGTGGGGCAAGCTAAGTTGGTTGTGGTCTTTTACAAGCTTCCTGCTGAGGCTGTGGTCTTCCAAAAAGAAACTGAATCTTGGTTGAAGACTCCACATTTTCAAGCATCTTGTTTTCTGTTTCTGGGCAGCTCTGCTAATAAGTCAGTGCGGTCCTAGGAGGCTCTCACTCAGAAGCTGGGAAGCATCTTGCACTGTCTTTGCCATCATCTTCCTCCCTAAGAGAACTGCTTTTGTTTTTTCCCAACTGGTAGGCAAGTCCTACCTGTGAGGGTATGTTTGATCACTCCAAGCTTTTGGACACATACCCCTGGGTGATGTTTGCTGGTGAGGCCAAAGAATCTCATGCAGCCCATCAGTGTCGGACACCTAACACCAGGCCGGGAACCTGGCCCACCATCTTGCTAATGGGAGGAGCCACAGGCAGGCCAGGCCTTGCTCCCATGTGTTCCTGTGGTAGAGCACTGGCCCTACTGTGAGAAGAGAGGCAGCCCTCCCATCTCTGCCCCAGCTGGGAGGGACCTGTCACAGAGCACAGGGTTAACAGAGATTGAAGTATGACTCGCATAGACTCAAAGATATACAGACAGTTAAAACATTGATATATACAAACTCCCCAAACTCCCCTTTGAAGTTCTGTATCTTCTTGCAGCAACTCTGAATTGCAAAAttctaacttctgccttctaactgtactctgctttcattcaacctttgagctaattgatgagctccttcctatctctacaaatcatcagcaagggctacttcaggtggccactccagccctttgggctctagtcaggattacataacttacctgaaatcaaaaattaagaaaaaggaagcttatatgcaaaagctctgcatcttttcctgatgatggcagagtccctggaggtagaaatTCTGCTGgagagagagagagagagagagagagagagagagagagagagagagaaggaggaagaggaggggaggggagACAAAGGAAAAAATAAGAGAATAAGCTGAGGTTTCAAGGCAAGGTAGTAAGCTGACACTGTAAATATTTTTACACAAAACTTTACTAAAGCAACAAAGATTCCCTGAAGATCCACCCTGGATGAGGCTTTGTGCTGACTTTAGAAATCATTGTGGGGGAAGAATACATTTCCTACATATTTTATTCATCAGTTTTGAAAAAAAATTCAAATCTTGCCATTGAAAAGTCTAAGAAAAATATGGGATTGTCTTTCTGAAAATTTCAGGGTTTTCTTTTACCTTTGCCAGAGTGTGGGGGCAGGACCGGGCCTCCCAGGGTGTCTGGCCCTTCCTGCTCGGTGGAGGTTCTGGGAGTGAGGAGGCCTGGGGCAGGAGGGGGTGGTGGGTGGCCCCGGGGGCCCTCCCAACTCACCACTGTGGCGCCTGTGTCCCCTTCAGATGCGCTGCTCCTGGCTGTGCTCACAGTGACCGTCCTCACTGTTCACCCCTGTGCTGTGTGGTGTTTTTTTTTCACTGACAGTGAATAAAAGGTGTGGCTGTGCTG

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