| Retrocopy Name | Hpcal4P1 |
|
| Species | Mus musculus | |
| Coordinates | chr4:129012276-129012482 UCSC | |
| Strand | - | |
| Parental Sequence | NM_174998.4 | |
| Parental seq. overlap | 173 bp | |
| Parental seq. overlap (%) | 3.7% | |
| Genomic Region |
Intragenic (Hpca) |
|
| Retrocopy Summary | Hpcal4P1, located on chr4:129012276-129012482, is a retrocopy of the parental gene Hpcal4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Hpcal4 |
| Full Name | hippocalcin-like 4 |
| Also known as | NVP-2 |
| Coordinate | chr4:123077297-123088492 |
| Strand | + |
| Gene summary | Predicted to enable calcium channel regulator activity; protein C-terminus binding activity; and protein domain specific binding activity. Predicted to be involved in signal transduction. Is expressed in central nervous system; male reproductive gland or organ; and tongue. Orthologous to human HPCAL4 (hippocalcin like 4). [provided by Alliance of Genome Resources, Apr 2022] |
| >Hpcal4P1 |
| AGAACACGGAGTTCTCtgagctggagctacaggagTGGTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCACCTTTGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCA |
| >NM_174998.4 |
| AAGAACTGGGGAGGCGGCTCCGACGCGGACCCTACAGAGCCTGTCGTCCGCCTGATAGCCAGCCTTGTCCCCGCGGCCGCCCAAGCTCGGAGCCATCTAGCGACTCGGCGAGCGGCCTCAGGTGGACAGCCATCTGGGAAGCCCGCCTTGGGCCAGGAACTTTCACTTCAAGCCGGGTCTCCAGTTCAAGAAGGAGGTACAGCTGCCTCCTTACCCCCAGCTCAGGCCCACCATGGGGAAAAACAACAGCAAGCTGGCCCCCGAGGTGCTGGAAGACCTGGTCCAGAACACGGAGTTCAGCGAGCAGGAGCTAAAGCAGTGGTATAAGGGTTTCCTGAAGGACTGCCCCAGTGGCATCCTCAACCTGGAGGAGTTTCAGCAACTCTATATCAAGTTCTTCCCTTATGGAGACGCGTCCAAGTTTGCGCAGCATGCTTTCCGCACCTTCGACAAGAACGGCGATGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTTTCTGTCACCTCCCGTGGCAGCTTCGAGCAGAAGCTCAACTGGGCCTTTGAGATGTACGATCTGGACGGTGACGGCCGCATCACACGGCTGGAGATGCTGGAGATCATCGAGGCTATCTATAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGATGGGCTCACACCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGATGACCAGATTACGCTGGAGGAGTTCAAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTCCTGCAGTGTGACATGCAGAAGTAGAGGCCGGTGAGGGGCAGGGCCCCTGGCCAGGAAAGGCATGGCAACCTTCCAACCTGATGTCCTCTCTGCTGGCCCACCCCCGGGGGGAGGGGCGTTCCAGCCTCACTCTCTAGCTCACCCACTCCTCTGTCCAAGCCTTTCTCTCCTCAGTCAAGTTCCTCGAGCGACCACCACCTCATTCTGTAAAAGAGACAGGTCCTCTCAAGTAGCCTGTCCTCAGATAGTCTGTCACTAGCTCCACCTCTAGCCTTGGCCTAGAACCAACATCCTTTGGGCTTAGGAGAGTTGGCTTTTGACCCCAGAGGCGAGGTTAAGGAGGGGCTGAGGACTTGCTTTGCAATCCTGTTGTTCCCAGGATTATGGTCCAAATAAACAGCATGGTCCCACAGGCCCCCAGTCAAAGGGCCAAACCGGGTCTGTCCCGGGCTATCGGGATTCCCCGAGAGGTGgtctctgccctgctcccttgCTCTACCTGGCCCCTCTGGCCCCAGTCTTTGGAACGTTCAGTGAGTCCTTTCTTCAGCTAATGCTTGTTGAACACTTGCCCCATGCCAGGCACCTGAAGGTGCTAAGAATACGGTTGTTTACAGAAACCCATCCCATGCCCTCTGGAAGCTCACAGGGTAGCGAGACAACTGCCAAGGGTTGCAGTCTCGGACAGGATGGTGGAACACAATGGAGATGAAGGTGTGAGGTAGCTGGCACGCTGTCAGAACTAGTGTGTCCTCCAGCTGGTGCCACCCAAAGCTGCAGAAAGTCCAACTGAAAAACCTGTGGAACTTTAGGTGCCACGTGGGTGGatgttttaagaaaaacaaaattttatgtaatatttatttttttagtgccCTTTCAAAGACATAAGATCATTTTATTAGACTATAAAAATATACTCTATATTACTTGatttcttaaaaaaagatttaaatgaatataaaaatgctGATGTTCAAGGGGGGAAAATGTTTAGGCAAAAGCGGTAGGGCCACCATCAGGTCTGGAGAACCCGTACTCTCGCCACCAGCAGTTCCTGCTGTCTCTGCTATGTCCCTTTATTACCTTTTCTCAATTCCACAAGTGACTTTTCTGTCGCACACCTTGGGTGCTGACATCAGAGTAAGAAACGAAACTTACCATGGGCAAACGCAGTTCATTCCCACGGCCCGGTACCATGGGCATGCGCAGTTCATTCCCATAGCGCAGTATCATGGGCAAGCGCTGTTCATTCCCACATCTCGGTACCATGGGCAAGCACAGTGCATACCCACATCTCGATAGCTTGTTTCTGAGTTTGGGTTGGTTTTTCAGGGATCGGCTTATTCTTTCACAGCCTAAGATAGAAGGAGCTAGAAGAAAGGGATCTTGCGGCTGTTCAGGCTTCGGGGGCTGCGCTTATCTATGGACCAAATGCTTAAAGAATGTGCTGGGCGTACTCCGTGCAAAAGGCTTTTCCTAAACCCTTCCGTCCTAGATCTGCCAGGTAATCTACTTTGTCACCTTCCAAGCTCACCAGCCTCGCTTTCTGAATTTTAAGGTCTATGAGCTAACTAGTGTGCTGCATGCTTTCCAgaaaaatccacctgcttcttccAGTTCCTCGCTTCACTTTCGCCTACGCTTCCTTGCGATCAGAGGTTGGCTTTGATGTGCGATGACAGTTGGCTTCCTCTTGAGCTGCTGTGAAAACAGTCTAGTACAGAGATGCTGTCAGCCAGGGTGGGCGTAGAGAGAGCTTGAGAAGCTGGGGCGTGTGGTGGCGGAGATTGCCCTGCAGAAGATACGCTATTTGCCACTTACTTCCGAGTGCTCACCTCCCTTCTGGTAGAAATGTTTGTAGATTCTGACCTGTGGTCCAAAGTTCTGTCAGACTTTCCTTCTTGTGGCCTTTGGAGGGAGCAAGCCACCTTCTTCCTGACCTGCCTATCCAGGCCACGTGCTAAGGGTGAGGAATTCTTAGCCTCAAGTGGTACTAGCAGTTGTTTATCTGGTGATGCTTCGTGGGGTTGCTCCATAGCTCTGGCACACGGCCTGCTAAGCATGTCTTTTGCTATCATCAGTgccacagacacataaataccCAACCACCTTGCTCAGCTGGGACCTGGATCTTCTAGTGAAAAGCTTTTCCTTCCCCCCAAATGTTTAATCTAGCCCAACCCACAATGACACAGAATTTCTTGGCTTTCTAAGGCTTGTATCTGCCTGCATCTCATTTTGTCCTCACAGCCCAAGGAGATAAGGGTTTTACCCAGGCTTGGAAGCTAAAGTTAAGGGTTGAGGGAGAGAGGTCTCTTGTATGAGAGACACACAATGCTAAGACTCGAACGCAAGGCTCTCCAAGAGTCTCTTCTCTGCTCCATCTGATTTGTCCAGATGCTAACTGCAAGACAAATCGACTTTTATCCTTTCAGAAGTTTCCTGCCAAGAACTTGCTGAGGCTACAGTCTTCCGAAAAGGAGGAGGAGCTTGAAGTCTCTCCACTTTCAAGCATCCTCTCGTAGCTTCTGGGCAGCTTTGCAGTGCTGTTCTTGGAGGCTGCTAATCAAGTCCTGGAAGCATCTTGTGTTGTCTTCTCCACTATCTTCCTTCCCCAaagaattgcttttctttttccaagttGGTAGGCAAGTCCTACCCATGAGACAGATCACTCTAGGCTTCTAGTCACCCACTCACGGGCAATATTTGCTGCTTAAGGCCAAGGGTTTCAGACAGCCAACAGGCCTCAAACTGGCTCTGCCCTCTTGCTCATGGGAGAAGCCACAGACAGGTCGAGCCTTGCTCCCACATTCTCCTGGGTGTCTAAAACTCAGTATGCCCAGGAGACCATGTGGTAGAGCGCCCGTCCCTGCCTTGGGAAGAGAGAGATCTCCCATCTCCACTCCGGCTTGGGAAGCACTTAGCATGAAGCACAGGTCAGCAGAGATCTGGGTATGACTCGCACAGGCATGAAAACCTAAATGCAGATAAAACACTGGCATACCAAGTTCTCCTTCGAGGTTCTGTATCCTCTTACAAAAAGTCTGTGAATCTGGTGGTTCCAAATTTAGCCTTCTCATGCCTGCTATCCTCATTCATCCTTTCTGGCTAAGTGATGAGCCCCTTATTTCTCATCCCTAAAAATCCCCAGCGTAGGCTGCCTTGTGTGCCGCTGCGATCCGTGCAGCTGCGTAATTACTCGCGTACCTTTGAAATGAAGAGAAAGCCAAGCCCATTGGCCAAGGCACCAATTCCTCTCTGCTCTGGCAATGGCAGAGCCTCAAAAGCAGAAATCCATTTAACGCAGAAGGTTATGGAAGCAAGAAAAGGACACGCTGGTCTTCCCAGGCAGGGCAGTGAGCAGACACTGTAAATATTTTTACACAAAATTTATTAAAGCAAAAGTCATTTCCTGAAGATCCACCCTGGGTGAGGCTTTGTGTTGGCTTTAGAAATCACCACGGGGCTAAGAATACATTTCCTACATAGCTGCTTCATTGTGCTTAAAGGAAGCAAAGAAGTCACGTGCTAAATTTTAAAGTCTCAGAAAAACATGGGTTTTGTTTTCTACCCCCTAGACTTTTCAGGGTTTTCTCTTCTTAGCTTTGTCGGAGTATGGGGTAGGACAGGGTCTCTAGGGATGCATGGGTCCCTCTGCTTGGTGGAGGCTGCCCAGGTGCATGGTCTTCTAAGCAGTGAGGAAGCCTAGGTGTATCCCAGTTCACTATGGGAGCCCCAGTGTAGCCCTGTCCCCTCCGGACATGCTGCTTCTAATTGTGTTCACAGCAACCATCTTCACTGATCAACCCTGTGCCACGTGGTGTGTGTTTTTCCCACTGACAATGAATAAAAGGTGTGACTG |
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