| Retrocopy Name | HPCAL4P1 |
|
| Species | Rousettus aegyptiacus | |
| Coordinates | scaffold_m13_p_1:20364969-20365175 UCSC | |
| Strand | + | |
| Parental Sequence | HPCAL4_x2 | |
| Parental seq. overlap | 170 bp | |
| Parental seq. overlap (%) | 3.8% | |
| Genomic Region |
Intragenic (HPCA) |
|
| Retrocopy Summary | HPCAL4P1, located on scaffold_m13_p_1:20364969-20365175, is a retrocopy of the parental gene HPCAL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | HPCAL4 |
| Full Name | N/A |
| Also known as | NULL |
| Coordinate | scaffold_m13_p_1:25369885-25381648 |
| Strand | - |
| Gene summary | N/A |
| >HPCAL4P1 |
| GAGAACACGGAGTTCTCGGAGCTGGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACGGGCATCCTCAACGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGGGATGCCTCCAAGTTTGCTGAGCACGTCTTCCGCACCTTTGATACTAACAGTGATGGCACCATTGACTTCCGGGAGTTCATC |
| >HPCAL4_x2 |
| AAGAGCTGGGAGGCGGCTCCAGCGCGGACCTTGGAGAACCTGGCCTCCAGCCCGCGAGCCCATCTCGGTCCCCGCGGCCCGCTGAGGCTCGGAGCCATCCAGCGACCCGGCGAGCGGCCTCAGTGGGTGCAATGTCAGCAGAACATAGAGAAAACAGCCTGAGGCCATTGCACAGAGGAAGAAGGGGGTCCTGCCCATCAAGGATTATTCACTGAACATCCCTGGGTTCCAGGCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCAGAGGTGCTGGAGGACCTGGTTCAGAACACGGAGTTCAGCGAACAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTCCAGCAGCTCTATATCAAGTTCTTTCCCTACGGTGACGCCTCCAAGTTTGCACAGCACGCTTTCCGCACCTTCGACAAGAACGGCGACGGCACCATCGATTTTCGGGAGTTCATCTGTGCTCTATCAGTCACCTCACGCGGCAGCTTCGAGCAGAAACTCAACTGGGCCTTTGAGATGTACGACCTGGATGGCGACGGGCGCATCACGCGCCTGGAGATGTTGGAGATCATTGAGGCTATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGATGGGCTCACACCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGATGACCAGATTACTCTGGAGGAGTTCAAGGAGGCAGCTAAGAGCGACCCATCCATTGTGCTGCTGCTGCAGTGCTGGCCCTTCCCTGGGAAGAGGAGGACACCAGCCTCACTCTCCGGCCCACCCACCCCTTTGTCCAAGTCCTTGCTCCCCTCAGTCGTGATCCTTGAGGGACCAGCTTACCCTGGAAAAGAGACAGATCCTCAGGTATCCTGTAGTCTAGAACTACCCCAGTCTTGGCCCAGAATCTACATCCACTGGGCATAGAGGAGTTGAGTTGGCTTTTGCCCCTAGAGGCAGGGTTAAGGAGGGTGGCTGGGATTCTGCTTTGAAATTCTGTTCTTCCTGGCCAAATTGAGTCTGTCCTTTGCTGAGGACCCAGATCCCTTATAGGTGGTCTCTGCCCGGCCCTCTTGACTCTACCTGGCCCTTCTGGCCCCAGCCTTTGGAGCTTTCATTCAGTCCTTTCTACAGCTAACGTTTATCGAACACCTGTTCAATGTCAGGCACCTCTAGATGCTAAGGATATGGTAGTCTACAAGACACGTTCCGTGCCCTCCGAAAGCTTGTAGAGTCATGAGGCAGACTTCCAGTGGTCGGGGTCTTAAATGGAGACCTCAAACAGCTGAGCAGGGGGTGTATTAAATCTTTCCGCTCAGCTCCACACAGAGATACAGAAGGATGAAATGAAAAGTGTTCAGAAGTCTAGGAACCATGCGaatggaatttttaagaaaaaatagaaacttatgtaatacttatttttttagtaccctttaaaagagctaaagtcattttgttagtttaggatattaaaacgtactttatattacttgttttttggtaagatgatcaagtgaatatagaaaatgctaattttcatgggaaaaaaaagagctgagaaaaaaagggagaaaataccaccaaatttaccagattacattttttcttatccagctaaatgctgagctgtcaccatttgcagcttctgctgcttcctttttaatgatctttTTCAATTCAGTGAGCAACTCTGTTGTGCACTTACTCTGGTTAGATGCTGACTTCAGAAACAGAAAAAATAAGGTTGGTAGAGAGTGAGACAGTACATTTCCCACATCTTGGTAGCTCCTTTCTGGATTTTCTAGTTTCAAAGATGGGCTTGTTGTTTCACTGCTACAGAGTGGAAGGAGCTAGAAGAGGACCACCTGGCCACTGTTTAGGCTGccaggctgcaatggaccaaatgactaaaaatgtgctgggcatgctccatttgaaaagcttttcctcactccacatcctacacctgccagattattcatcatattccaagtgcactggttttgctttccattgtctgctttctgattttggatctatgagctatcgagctgcatgctttgactgccaggaaattcatcttgctccttcatccagtctttcactttactttctcctgtatttgtgatcagaaattacctttaatgtgtagtggcagttgatttcctctTGAACTCCTGGTGAAACAGTCTAGTACACAGGTGCTGTCAGCCCAGGGTGGAAGCAGGGAATGGATACTGAATTGGGGGGCGTGGGACTGTATCTGCAAGAAAACGATGAAGCACACCTCTTACTGCTGAGTGCTCACCTGTCCTTCTCTGCAGGTGTAAACTCTTGGGGATGCTGACCTTTGGTCCCAAACTCTATTGGACATTCCTTCTTGCTGCCCTTATGGGTAGCAGGGCCACTGGGTTTCCACCCTCTTTCTATCCTACCTATGACCAGCCACATGGTAATGCTGGGGAATTCACATCTTCAGGCAGTAAGCAGCAGGTTTTTGTTCAGTAATGCCTCAAAAGATCTTCCATTGCTCTCAAGAGTTGGCCTTAGGTATATCTTGTGCTGTCAGTCAACACCACAGATACAGATGCTCAACAGCCTGTCTCAGCTGACACTTCCAGTGGAAAGCTTTTTACAAAGTGGAGTTTCTATCCCCCATACATTGAATCTAATCtaactcccaatcatgcagaactttatggctttcaaagtcttgccatctctctcctcttattctatcctcatagctgagagaaatgagggtctttattccctttcttcagacttggaaactgaggcacagagggggaattgtttgcttaagagcacacagtcaggaggtagcacagtgccaagacttgaacccCAGGCTCTAAGAAGATTTCTTCCCTTCAGAGTCTCTTCCCTGCTCATGTCTCTGACTCTTGAGTTGTACATAGGTTGACTGTGGGGCAAGCTAAGTTGGTTTTGGTCTTTTACAAGCTTCCTGCTAAAAAATTTCTGAGGCTGTAGTCTTCTAAAAAGAAATAGAAGCTTGGTAGAAGTCCTCACATTTTCAAGCATCTTGTTTTATGCTTCCGGGAAGCTCTGCTAATAAATTAATGCTGTCCTAGGAGGCCTCTGACCCAGAACCTTGGAAGTATCTTGCATTGTCTTTACCATCATCTTCCTCCCTAAGAGAACTTTTTATTTCATCCAGCTAGTAGGCAAATCGTACCTGCGAGGGCATGTTTGATTACTCCAAGCTTCTGGACACATATCTCTAGTGATATTTGCTGATCAGGACAAAGATTCTCATACAGCCCAGAAGTGCTGAACACTTAATGCTAGACCAGGAACCAGGACCACCCTCTTGCTGTTGGGAGAAGCCACAGGTAGGCCAGGTCTTGCTCCCACATGCACCTGGATGTCCCAAGGACTGTGTGCTGTGGTAGAGCACTGGTTCCACTGTGAGAAAAGAAGAAGTCCTCCCATTTCTGCTCCAGGTGAGAGGGACTTGTCACAGAATACAAGGTTCACAGAGATTGAAGATGGCTCACATAGACTCAAAAATATACAGACAGTTAAAACATGGGTATATCCAAATTCTCCTTCGAAGTTCTGTATCTTCTTTTAATAGCTCTATGAATTGCAAGATCCCAGAATCTGCCTCCTAATTGTAttctgtcttcattcaaccttttgggctaattaatgagctccttatttttgctctttaaaaaccatcagcaagggctacttcagatggccactccagccctttgagctattgtcaggattatataacttactttaaatcaaaagttaagaaaaaggaagcccagaagcaatgacactgagtcttttcctgataatagcagagtccctagaggtagagattaatcttgctGCAGAGAAGAAGAAAAGAGAAAGAATAAGAGAATAAGCTGGGGTTTCTGAACAGGGTAGTAAGCTGCCACTGTAAATATTTTTACACAAAAATTTACAAAAGCAACAAATATTTTCTGAAGATCCACCCTGGGTGAGGCTTTGTGCTGACTTTAGAGATCACTCTGGGGGCAAGAATACATTTCTTACATATTTTATTCATCGTTTTTGAAAAAAATATAATTCAAATCCTGAAATTGAAACATCTCAGAAAAATATGAGATTTTCTTTCTGAAATTTTCAAGGTTTTCTATCTTTGCCAGAATGTGGGGGCAGAACTGGGCTTCCCATGGTATCTGGCCCTTTCTGCTTGGTGGAAGCTCCAGGATTGTGGATGCCTAAGGAAGGAGGGGGACTGGGTGGCAGAGGAGGGCCTCCCAAGTCATTCTCCAGCATAGCCCCCTATTTCCTTTAGAAGTGTTATTCCTGGCTGTGCCCACAGTGACTGTCCTCACTGTTCGATCCTGTGCTTTGTAGTGTGTTTTTTTTCACTGACAGCGAATAAAGGTGTGACTGTG |
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