| Retrocopy Name | HPCAL4P1 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chr1:32888950-32889239 UCSC | |
| Coordinates (T2T) | chr1:32748745-32749034 UCSC | |
| Coordinates (hg19) | chr1:33354551-33354840 UCSC | |
| Strand | + | |
| Parental Sequence | NM_016257.4 | |
| Parental seq. overlap | 237 bp | |
| Parental seq. overlap (%) | 5.1% | |
| Genomic Region |
Intragenic (HPCA) |
|
| Retrocopy Summary | HPCAL4P1, located on chr1:32888950-32889239, is a retrocopy of the parental gene HPCAL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | HPCAL4 |
| Full Name | hippocalcin like 4 |
| Also known as | HLP4 |
| Coordinate | chr1:39678648-39691433 |
| Strand | - |
| Gene summary | The protein encoded by this gene is highly similar to human hippocalcin protein and hippocalcin like-1 protein. It also has similarity to rat neural visinin-like Ca2+-binding protein-type 1 and 2 proteins. This encoded protein may be involved in the calcium-dependent regulation of rhodopsin phosphorylation. The transcript of this gene has multiple polyadenylation sites. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013] |
| >HPCAL4P1 |
| GAGAACACAGAGTTCTCAGAGCTGGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACAGGAATCCTCAATGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTTCCCTATGGTGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCACCTTTGACACCAACAGCGATGGCACCATAGACTTTCGGGAGTTCATCATTGCGCTGAGCGTGACCTCGCGCGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGACGGCAACGG |
| >NM_016257.4 |
| GATACAAGAGCTGGAAGGCGGCTCCGGCGCAGACCTTGGAGAGCACAGCTGCCGGCCCGCGAGCCAGCCTCGGTTCCCGCGGCCCGCCGAGGCTCGGAGCCATCCAGCGACCCGGCGACCGGCCTCAGGCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCCGAGGTGCTGGAGGACCTTGTTCAGAACACTGAGTTCAGCGAGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTTCAGCAGCTCTACATCAAGTTCTTCCCCTACGGCGACGCCTCCAAGTTCGCGCAGCACGCTTTCCGCACCTTCGACAAGAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTGTCGGTCACCTCCCGCGGCAGCTTCGAGCAGAAGCTCAACTGGGCCTTTGAGATGTACGACCTGGACGGCGACGGGCGCATCACGCGCCTGGAGATGCTGGAGATCATCGAGGCAATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGACGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGACGACCAGATTACATTGGAGGAGTTCAAGGAGGCAGCCAAGAGTGACCCATCCATTGTGTTGCTGCTGCAGTGTGACATGCAGAAGTAGAAGCTGGTGAGGGGCAGGGTCCCTGGCCAGAAGGGGCATGGCCACCTCCCAACCTGATGACCTCTCTGGCTGGCCTCCCAGGAGGAGGGACACTCCAGCCCCCCTCTCTGGCCCACCCAGTCCTCTGCCCAAGCCCTTCCTCCCCTCCATCAAGATCTTTGAGGGACCACCTCACCCTGCAAAAGAGACAGGTCCTCCAGTACCCTGTCTTCTAGCCCCACCTCCCACTTGGCCAGAACCAATGTCCATTGGGCATAGGGGAGTTGGCTTTTGCCCCAGGAGGTGAGGTTAAGGAGTTGGGGGCCTGGGGTTCTGGTTAGGAATTCTCTTGATCCTGGGATTATGCTTTATAGGATGTGGTCCCACAGGCCTGTCACAGGGCCAAATTGGGTCTGTCCATTCCTGAGGCTCCAGATCCCATAAAGGGGGTCTCTTCCCCATCCCTTCTACTCTACCTGGCCCTTCCAGCCCCAGCCTTTGGAGCGTTCATTCAGtcctttcttcagctaatgattactgagcacctgtttggtgctaaggatatggtcatttacaagacacatcttgtgccctctggaagctcatagggttgtgaggcaaacTTCCAGCCGTCAGGGTCTCAGCTAAGCAGAAGGTGCTGGAAGGCTGGTTAGTCTGGGAGGAGCTATTTCATCTTCCAGCTCAGCTCCACACAAAGCTGCAGAAGGACGAAATGAAAAGCATTTGGAAGTTTAGGAGCCACGTGAGTGAAAGTTTTAAGAAAAATGAAATTTATGTCATACTTATTTTTTTAGTACCCTTTAAAGGAGCTACAGTCATTTTATTATTTCAGGAGGTTAAAATATACTCTATATTACTTGGTTTCTTATAAAATGATTAAATGAATAGAGAAAATATTAATTTTCAAGGGGAAAAAACCTGAGAAGAAAGGGAGAAAAGACCATGAAATTTACCAGATAACACTTTTTAAGACTAAGTCCTGAGCTGCCACTCTCAGCAGTTTTTGCTGCTTCAGCTCTTCCTTTTTATTACCTTTTTCAATTCAACAAGCAACTTTCTGCTACATACTTACTCCGGTTGGGTGCTGACTTCAGGGACAGGAAAAAGCAAGGTTTGCAAAGAGTGAAACTAGTGTATATTCCGTATCTTGGTAGTTCGTTTCTGGATTGGGTTTAGTTTCAGAACTGGACTTGTTCCTTCACTGCCACAGAATCAGAAAGAGCTAGAAGAAAAGGCTCACCTGGCCACTGTTTAGGCACCCAGACATAATTTATGGACGAAATGCCTAAAAATGTGCCAGGCATGCTCTGTTTGAGAGGCTTTTTCTAACCCCAAATCTTAGATCTGCCAGGTAGTTCAACATCTTCCAAGTGTGCTGGTTCTGCTTTCCAATGCCTGCTTCCCAATTTTGGATCCATGAGCTATACAGCTGCATGCTTTGACTGCCGGAAAAATTAATCTTGCTTCTTCATCAGGTCTTTCTCCTGTACTTGTGATCAGAAATTACCTTTGACGTGCAGTGACAGTTGATTTCCTCTTGAACTGCCGGTGAAAACAGTCTAGTACACAGGTGCTGTCAGCCCAGGGTGGGAGCAGGAAATGATTGCTGAGCCCGGGGCAGGGGAATTGCATCTGCAGGAAAGAGATGCAGCATGCTCCTCACTCCTGAGTGCCCACCTGTCCTGCTTCTCTGCAGGTGAAAACTCTGGGGGATGCTGATCAATAGAGCTTGGTCCCAAGCTCTACTGGGCCCTTGGAGGTAGCAAGGCCACTGGGTTGCTATCCTCTTGCTGGGGATAGCAACCACTGGTTTGCAACCACTGGGTTGCTATCCTTTTGCTATCCTCTTGCTCATGACCAGCCATATGGTGAGGCTGGGGAGTTCACATCCTCAGGCAGGAACTAGCAGTTGTTTATCCAGCAATGCCTCAAGGATGTTGCATTGCTCCCAGGAACTGGCTATTAGGTATGTCTTGTGCGGTCAGTCAGCATCACAGACACATAGATGCTCACCAGCCTGGCTTAGCTGGGACCTAAATCTTCTGGTGAAAAGCTTTTCACTAAGTGAGGTTCCTTCCCTGCAAATGCTGAATCTAGCCTAATTCGCAACCACacagaatttcatggctttcaaaggcttgccatgtgccccatctcattctatactcacatcccatggaggtgaggattttcacttcttttctctagacttggaagctgagattcagagaggaagcatcccttgtgcaagatcacatagtcaggaggtgacacagggctaagacttgaaccaaggCTCTAAGAGGATTTCTTCTTTTCAGAGTCTCTTCCCTGTCCATTTCTGTGACTAAGCTGTGCAGAGGTTGACAGCAGGGCAAGTTACATTGATATTCATCCTTTATAGGCTTCCTGCTAAAAAGCTTCTGAGATTGTGGTCTTCCAAAAAAAATAGGAGCTTGGTTGAAGTCCCCACATTTTCAAGCACTCAGTGTTCTGCCTCTGGCAGCTGTGCTAACAGCTCAGTGCTGTCCTGGGAGTCCTCTGACTCAGAACCCTCGAAGCATCCTGCATTGTCTTTACCCACCATCATCTTCACTAAGAGAAACATGCCTACCCATGAAGGCGTGTTTGATTACTCCAGGCTTCTGGACACACATACCCATGGGTGATTTTTGCTCCTCAGGCCCAATATTCTCAGACAGCCCAGCAGTGTGAACACACAATGCCAGGCCAGGAACTGGGACCACCATCTTGCTGATGGAAGGAACAACAGGTGGCCCAGGACATGCTCCTGCATACTCCTGGGTGTCCCAGGGACTGTGTGCTCAGGAGCACTGTGGTAGAGCACTGGCCCTGCCTTGAGAAGAGACACAGGTCTCCCGTCCCTGCACCAGCTGAGAGAGACTTGCCGCAAAGCACAAGGCTGGCAGAGATTTATGTATGACTTGCACAGACACAAAAATATACAGACAATCAAAACATTGATATATTCAAACTCTCCTTTAAATTCCAATCTTATTGCAACAACTCTGTGAATTGCAAGGTCCCAGAATCTGCCTTCTCACATACTCTACCCTCATTCATCCTTTTGGGCTAATTGATGAGCATCTTATTTCTTATCTCTAAAAATTATCAGCAAAGGCTACTTCAGATGGCCACTTTAGTCCTTTCAGCTGTAGTCAGGATTATTTAACTTACCTGTATATCAAAAGTGAAGAAAAAGTTAGTTCATAAGTAAAGGCACTAAATCCTTTCCTGACAATGGCAGAGTCTCTAGAGGTAGAAATTTGCCTTGCTGCAGAGAGAGAAGGAATGGCGTGGGATGGGGGAAAGAAAAGAAAGAGAAGAAGCTGGGGTCTCCAGGCAGGGTAGTAAGCTGACACTAAATATTTTTTACACAAAAatgtattgaagcaacaaatatttcctgaagatccaccctgggtgaggctttgagctgactttagagatcactgtggggtcaagaATGTCTTACATGTTTTATTCATCATTCTTGAAAAAAGAAATAATTCAAACCTTGGAATTAAAAAGTCAGAAAAATATGGGATTTTCTTTCTGGAATTTTCGAGGTTTTCTTTTTACCTTTGCCAGAGTGTGGGGGCAGGACTGGGCCTGCCAGGGTGTATAGCCCTTCCTGCTTGGTGGAGGCCAGTCAGGCCCAGGGCCTTCTAAGCAGCAGTAGAAAGGAGGCTTGGGGAAGTGGGGGGTCTGGGTAGCAGGGGAAGGAGGCCAGTTCCAGTGTAGCCCCCTATCCCCTCCAGATGTGCTGCTTCTGGCTGTGCACTCAGTGACTGCCCTCACTGCTCAACCCTGTGCTGTGTGGTGTGTTTCTTTCCCCACTGACAGTGAATAAAAGGTGCAACTGTG |
| PMID - Link | Title |
|---|
