Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name USP22P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_9) and its respective parental gene (in scaffold_m13_p_6). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_9:31818817-31820372  UCSC
Strand +
Parental Sequence USP22_x4
Parental seq. overlap 1236 bp
Parental seq. overlap (%) 75.3%
Genomic Region Intergenic
Retrocopy Summary USP22P1, located on scaffold_m13_p_9:31818817-31820372, is a retrocopy of the parental gene USP22. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name USP22
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_6:63690103-63737533
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens USP22P1
Chimpanzee Pan troglodytes USP22P1
Bonobo Pan paniscus USP22P1
Gorilla Gorilla gorilla USP22P1
Orangutan Pongo abelii USP22P1
Gibbon Nomascus leucogenys USP22P2
Green monkey Chlorocebus sabaeus USP22P1
Crab-eating macaque Macaca fascicularis USP22P1
Rhesus Macaca mulatta USP22P1
Baboon Papio anubis LOC101010809P1
Golden snub-nosed monkey Rhinopithecus roxellana USP22P1
Marmoset Callithrix jacchus USP22P1
Mouse lemur Microcebus murinus USP22P1
Mouse Mus musculus Usp22P1
Rat Rattus norvegicus Usp22P1
Chinese hamster Cricetulus griseus LOC113836802P2
Rabbit Oryctolagus cuniculus USP22P1
Pig Sus scrofa USP22P1
Cow Bos taurus USP22P1
Sheep Ovis aries USP22P1
Dolphin Tursiops truncatus USP22P1
Horse Equus caballus USP22P1
Dog Canis familiaris USP22P1
Panda Ailuropoda melanoleuca USP22P1
Cat Felis catus USP22P1
Pale spear-nosed bat Phyllostomus discolor USP22P1
Velvety free-tailed bat Molossus molossus USP22P1
Greater mouse-eared bat Myotis myotis USP22P2
Greater horseshoe bat Rhinolophus ferrumequinum USP22P2
Sloth Choloepus didactylus USP22P1
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>USP22P1
CTGTTCCCACGTGAACAGCTTTAAGGTGGGAGAGAACTGGAGGAAGGAACTGCGGGTGATCTACCAGTGCTTCGTGTGGTGTGGAACCCCAGAGACCAGGAAAAGCAAGGCAAAGTCGTGCATCTGCCATGTGTGCAGCACCCATCTGAACAGACTCCACTCTTGCCTTTCCTGTGTCTTCTTTGGCTGCTTCACGGAGAAACACATTCATGAGCACGCTGAGACAAAACAACACAACTTAGCTGTAGACCTTTACTATGGAGGTATATACTGTTTTATGTGTAAGGACTATGTATATGACAAAGACATTGAGCAAATTGCCAAAGAAGAGCAAGGAGAAGCTTTGAAATTACAAGCTTCCACCTCAACCGAGGTTTCTCACCAGCAGTGTTCAGTGTCCCGCCTGGGTGAGAAATACCCAACCTGGGAGACAACCAAACCGGAGTTAGAACTGCTGGGACACAACCCAAGGAGAAGAAGAATCACCTCTAGCTTTACCATCGGTTTAAGAGGACTGATCAATCTTGGCAACACGTGCTTTATGAACTGCATTGTCCAGGCCCTTACGCACACTCCGATCCTGAGAGATTTCTTCCTCTCTGACAGGCACAGATGTGAAATGCCAAGTCCCGAGTTGTGTCTGGTCTGTGAGATGTCTTCGCTTTTTCGGGAGTTGTATTCTGGAAACCCATCTCCTCATGTTCCCTATAAATTACTGCACCTGGTATGGATACATGCACGCCATTTAGCAGGGTACAGGCAACAGGATGCCCATGAATTCCTCATTGCAGCATTAGATGTCCTGCACCGGCACTGCAAAGGTGATGATGCTGGGAAGGCAGCCAACAATCCCAACCACTGTAACTGCATCATAGACCAAATCTTTACAGGTGGCCTGCAGTCCGATGTCACCTGCCAAGCCTGCCATGGTGTCTCCACCACAATAGACCCATGCTGGGACATCAGTTTGGACTTGCCTGGCTCTTGCACCTCTTTCTGGCCCATGAGCCCAGGGAGGGAGAGCAGTGTGAATGGGGAAAGCCACATACCAGGAACCACCACTCTCACAGACTGCTTGCGAAGGTTTACAAGGCCAGAGCACCTAGGGAGCAGTGCCAAAATCAAATGTGGTAGTTGCCAAAGCTACCAGGAATCTACCAAACAGCTCACAATGAATAAATTACCCGTTGTTGCCTGTTTTCATTTCAAACGTTTTGAACACTCCGCCAAACAGAGGCGCAAGATCACTACATACATATCCTTTCCTCTGGAGCTGGATATGACACCATTTATGGCCTCAAGTAAAGAGAGCAGGATGAATGGACAGTTGCAGCTGCCAACCAGTAGTGGAAACGAAGAGAATAAATATTCCCTGTTTGCTGTGGTTAATCACCAAGGAACCTTGGAGAGTGGCCACTACACCAGCTTCATCCGGCATCACAAGGACCAGTGGTTCAAGTGTGATGATGCTGTTATCACCAAGGCCAGTATTAAGGATGTTCTGGACAGTGAAGGGTATTTACTGTTTTATCACAAACAGGTCCTGGAACATGAGT
>USP22_x4
ATGGTCTCCCGGCCTGAGCCGGAGAGCGAGGCCATGGATGCGGAGCTGGTGGTGACGCCGCCGGGTTGTTCACACCTGAGCAGCTTTAAGGTGGACAACTGGAAGCAGAATCTGCGGGCCATCTACCAGTGCTTCGTGTGGAGTGGCACAGCGGAGGCTCGCAAGCGCAAGGCAAAGTCGTGCGTCTGTCATGTTTGTGGTATCCATCTGAACAGGCTTCACTCTTGCCTCCATTGTGTCTTCTTTGGCTGTTTCACAAAGAAACATATTCACGAACATGCGAAGTCGAAACGGCACAACCTGGCTATAGAGCTTATGTATGGAGGTATCTATTGCTTTTTGTGTCAAGACTACATATATGACAAAGACATGGAAATCATTGCCAAAGAGGAACAACGGAAAGCTTGGAAAATGCAAGGCGTTGGAGAGAAATTTTCAACTTGGGAACCAACCAAACGGGAGCTTGAACTGCTGAAACACAACCCAAAAAGGCGAAAGATCACCTCTAACTGCACCATAGGTCTGCGAGGGCTAATTAATCTTGGAAACACATGCTTCATGAACTGCATTGTCCAGGCGCTCACCCACACACCACTCCTGCGAGATTTCTTCCTCTCTGACAGGCATAAGTGTGAAATGCAGAGCCCCAGCTCCTGTCTGGTGTGTGAGATGTCATCCCTTTTTCAGGAGTTTTACTCCGGGCACCGGTCTCCCCACATCCCGTACAAGTTGCTGCACTTGGTATGGACTCATGCCCGGCATTTGGCAGGGTACGAGCAGCAGGATGCCCATGAGTTCCTCATCGCGGCCCTGGATGTCTTGCACCGGCATTGCAAAGGTGATGATAATGGGAAGAAGGCCAACAACCCCAACCACTGCAACTGCATCATAGACCAGATCTTCACAGGCGGGCTGCAGTCAGATGTCACCTGCCAAGTCTGCCATGGAGTCTCCACCACAATAGACCCCTTTTGGGACATCAGTTTAGATCTGCCTGGCTCTTCCACACCATTCTGGCCTCTGAGCCCAGGGAGTGAGGGCAGCGTGGTGAACGGGGAAAGCCACGTATCAGGAACCACTACACTTACGGACTGCCTGAGAAGATTTACCAGACCAGAGCACTTAGGAAGTAGTGCCAAGATCAAATGTAGTGGTTGCCATAGCTACCAAGAGTCTACTAAACAGCTCACCATGAAGAAACTGCCCATTGTAGCCTGTTTTCATCTCAAACGATTTGAACACTCAGCCAAACTGAGGCGGAAGATTACCACATATGTGTCCTTTCCCCTGGAACTGGACATGACCCCCTTCATGGCATCCAGCAAAGAGAGCAGAATGAATGGACAGTACCAGCAGCCAGCAGATAGTCTCAGTAATGATAACAAATACTCCTTGTTTGCAGTCGTTAACCACCAAGGGACTCTGGAGAGTGGCCACTACACCAGCTTCATCCGGCAGCACAAGGACCAGTGGTTCAAATGCGATGATGCCATCATCACCAAGGCCAGCATTGAAGATGTGCTGGACAGTGAAGGATACCTACTGTTCTATCACAAACAGTTCCTGGAATATGAGTAA

Publications

PMID - Link Title