| Retrocopy Name | HPCAL4P1 |
|
| Species | Equus caballus | |
| Coordinates | chr2:24099389-24099595 UCSC | |
| Strand | - | |
| Parental Sequence | XM_001503442.6 | |
| Parental seq. overlap | 177 bp | |
| Parental seq. overlap (%) | 3.9% | |
| Genomic Region |
Intragenic (HPCA) |
|
| Retrocopy Summary | HPCAL4P1, located on chr2:24099389-24099595, is a retrocopy of the parental gene HPCAL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | HPCAL4 |
| Full Name | hippocalcin like 4 |
| Also known as | - |
| Coordinate | chr2:18386837-18398664 |
| Strand | + |
| Gene summary | N/A |
| >HPCAL4P1 |
| AGAACACGGAGTTCTCGGAGCTGGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACGGGCATCCTCAACGTGGACGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGTGACGCCTCCAAGTTTGCTGAGCACGTCTTCCGCACCTTCGACACCAACAGCGATGGCACCATCGACTTCCGGGAGTTCATCA |
| >XM_001503442.6 |
| TCGCGTCGCCTCGGAGAGACACAGTGATACAACAGCTGGGAGGCGGCTCCGGCGCAGACCTTGGAAAGCCTGGCCGCCAGCTCGCCAGCCAGTCGCGGTCCCCGCGGTCCGCCGAGGCTCAGAGTCATCCAGCGACCCGGGGAGCGGCCTCAGGCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCAGAGGTGCTGGAGGACCTGGTTCAGAACACCGAGTTCAGCGAGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTAAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTCCAGCAGCTCTACATCAAGTTCTTCCCGTACGGCGATGCCTCCAAGTTTGCGCAGCACGCTTTCCGCACCTTCGACAAGAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTTTCGGTCACCTCCCGCGGCAGCTTCGAGCAGAAACTCAACTGGGCGTTTGAGATGTACGACCTGGACGGCGACGGGCGCATCACGCGCCTCGAGATGCTGGAGATCATCGAGGCTATATACAAGATGGTGGGCACTGTGATCATGATGCGCATGAACCAGGATGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAAGATGACCAGATTACGCTCGAGGAGTTCAAGGAGGCAGCCAAGAGTGACCCGTCCATCGTGCTGCTGCTGCAGTGTGACATGCAGAAGTAGAGGCTGGTGAAGGGCAGGGCCCCTGGCCAGGAGGGGTGTGGCCACCTCCCAACCCAATGACCTCTGTGGCTGGCCCTTCCCCAGGGGGAGGGGTACTCCAGCTCGCTCTCTGGCTCACCCACCCTCCTGCCCAAGCCCTTGCTCCCCTCGGTCAAGATCCTTGAGGGACCACCTCACCCTGGAAAAAAAGACAGCTCCTCAGGTATCCTGTCATCTAGCCCCATCCCCAGTCTTGGCCCAGAACCAACACCTACTGGGCATAGGGGCGTTAACTTTTGCCCCAGGAGGCAGGGTTTAGGAGGGGGGCTGAGGTTCTGCTTTGAAATTCTATCCTTCTCGGGATTTTGCTTTCTAAGACTGGTCCTACAGACCTCAGTTAAAGGGCCAAATTGGGTCTGTCCTTTGCTGAGGACCCAGATCCCTTAAAGGTGGTCTCTGCCCTGCTCCCTCGACTCTACCTGGCCCCTCTGGCCCCAGCCTTTGGAGCATTTCTTCAGtcctttcttcagctaatgtttatggagcacctgtccaatgccaggcagctctaggcgataaggatatggtggtttacaagacacatatcatgccctctggaagctcatagggcagtgaggCAAACTTCCAGTGGTCAGAGCCTCAGCCAGGGATATCGAGCACAGCTGAGCAGAAAGTGTGGCCGGGCTGGTTAAGAGGAACTATTAAATCCTTCAGCTCAGTGTCACACAGAGCAGCTACAGAGGATGAAATGAACAGTGTTTGGAAGTCTAGGAAGCATGTGagtggaagttttacaaaaaattgaaatttatgtaatgcttatttttttagtaccctttaaaagagctaaagttgttttattagtttaggatattaaaacatactttatattacttggtttcttgtaaaatgattaaatgaatatagaaaatgctgatattcagggaaaaagaagagctgagaaaaaagagagaaaaataccatgaaatttaccaaataagactttttcttatcaagcgaagccctgagctgtcaccatcagcagtttctgctgcttcctttttaatgatctttttcaattcagtgagcaactctctatcgtgcacatctctggttaggtgctgacttcagaaacagaaaaaacaggctttgccgagaatgagacaggtgtatttcccacatcttagtagatcttttctggatttggtctagtttcaaggaggggcttgtcctttcactgctacggaagagaaggagctggaagaataggaccacctggcctctgtttaggctaccaggctgcatttatgaaccaaatgcctaaaaatgtgcagggcatgctgcatttgaaaggcttttcctaacacccaatcctaaatctgccgagtaattcatcatcttcctagtgcgctggctttgctttccaatgtcttcttcctgattttagatccatgagctatacagctgcatgctttgactgccagaaaatgaatcttgcttcttcatcaagtctttcgctttactttctcctgtactcgtgatcagaaattagctttgatgtgcagtgagttgatttcctcttgaaccgctggtgagaacagtcagtacacaggtgcTGTCAGCCCAGGATGGGAGCAGGGGATGACTGCTGAGTCCTGGGGGTGGGGGATGGATCTGTAGGAAAGAGATGCGGCATGCCTCTGACTTCTGAGTGCTCACCTGCCCTCCCTCTCTGCAGGTGGAAACTCTTGGGGATGCTGACCTTTGGTCTCAACTCTATTGAACCTTGCTTCTTGCTGCCCTTGGAGATAGCAAGGCCACTGGGTTGCCACCCTCTTTCTGTCCTTCTCCCTATGACCTGCCACATGGTAAGGCTGGGGAATTCACATCCTCAGGCAGGAACCAGCAGTTTTTTATCCAGTAATGCCTCAAGGGATGTTCTCTTGCTCTCAGGAGCTGGCCATGGGGTGTGTCTTGAGCTGTCAGTCAGCATCAGAGATACATAAATACTCAACAGCTTGGCTCAGCCGAGACTTCCAGTGGAAGGCTTTTTACAAAGTGGGGTTCCGTCTCCCAAATGGTGAATCTAACCtaattcccaattgcacagaactccatgactttcaaaggcttgccatctaccccgtctcattctatcctcagagcctagggaaatagggattttcattccctttctgcagacatggaaactgaggcacagagacgaggagtcccttgtacaaaagcagataatcaggaagtggcatagtgtcaagacttgaacccaaggctctcagagggtttcttccctccagagtctctttcctgctcatctctctgactcTGAGTTGTACCAAGGTTGACTGTGGAGCAGGCCAAGTCTTTTTACAAGCGTCCTGCTAAGAAGTTTCCGAGGTTGTGGTCTTCTAAAAAGAAATAGGAGCTTGAGTGAAGTCTCCACATTTTCAAGCATTTGATTTTCTGCTTCTGGGCAGCTCTGCTAATGGGTTAATGCTGTCCTGGGAGGCCTCTGACTTAGAACCTTGGAAGCATCTTATGCTGTCTTTACTGCTGTCTTCCTTCCTAAGAGAACCGTTTTTGTTTTTTCCCTTCTGGTGGGCAAGTCCTACCCATGAGGGTTGTGTTTGATCACTCCAAGCTTCTGGACATACCCCAGCAAGGATTCTCAAACAGCCCAGCAGTGTGAACACATAATGCCACGCCAAGAACTGGGACCACTATCTTGCCGATGGGAGAAGCCACAGGCAGGCCGGGTCTTGCTCCCACATTCTTCTGGGTGTCCCAGAGACTGCGTGCTTGGGAGCTCCTGTGGTGGAGCACCAGCCCTGCTGTGAGAAGAGAGgcaggcctcccattcctgccccagctgaagggacctgccacaaagcacaaggctggcagagattaaagtatgacttgcatagatacaaaaatatacagactgctaaaacactgatacatccaaactctcctttgaagatctctatcttcttgcagcagatcaatgaattgccaggtcccagaatctgccttcttattctgtcctcattcatccttttgggctaattgatgagcctcttatttcttatctcccaaaatcatcagcaagggctacttcagatggccacttcagtcctttgagctgtggtcgggattatataacttacctctaaatcaaaagttaagaaaaaggaagcccgtaaacaaagataccaaatattttcctgacaatggcagagtcccgagaagtagaaattcatcctgctGCAGAGAGAGAGAGAAGGTTGGGGGGGGGGGGCAGAGAAAGAAAGGAAAGAGAGAATAAGAGGATAAATTAGGGTTTCTAGGCAGGATCATAAACCGACACAGTAAATGTTTTTACACAAAAatttattaaagcaacaaatattccctgaaggtccccccgggtgaggctttgtgctgactttagagatcactgtggaagcaagaATACATTTCTTACATGTTTTATTCATCGTTTTTGGGGGAAAAAAAATATTCAAATCCCGCAGTTGAAAAGCTTCCGAGTGTGGGGGCAGGACAGGGCCTCCTAGGGTGGGCCTTTCCTTCTTGGTGGAGGCTGCAGGAGTGTGGGGGCCTGGGGAGGTGGGCGGCCGGGTGGCAGAGGGAGCCTCCCAGCTCCTTCTCCAGTGTAACCCCCACGCCCTTCAGATGCGCTGCCCCTGGCTCTGCCTGCAGGGACTGTCCTCACTGTTCGACCCTGTGCTGTGTGGTGTGTGTTTTTCAATGACAGTGAATAAAAGGTATGACTGTG |
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