| Retrocopy Name | Pja2P1 |
 |
| Species | Rattus norvegicus | |
| Coordinates | chrX:69214665-69214922 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001277278.1 | |
| Parental seq. overlap | 218 bp | |
| Parental seq. overlap (%) | 4.8% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Pja2P1, located on chrX:69214665-69214922, is a retrocopy of the parental gene Pja2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Pja2 |
| Full Name | praja ring finger ubiquitin ligase 2 |
| Also known as | Neurodap1|praja2 |
| Coordinate | chr9:111998204-112048847 |
| Strand | - |
| Gene summary | Predicted to enable protein kinase A catalytic subunit binding activity; protein kinase A regulatory subunit binding activity; and ubiquitin-protein transferase activity. Involved in long-term memory and regulation of protein kinase A signaling. Predicted to be located in cytoplasm; intermediate filament cytoskeleton; and plasma membrane. Orthologous to human PJA2 (praja ring finger ubiquitin ligase 2). [provided by Alliance of Genome Resources, Apr 2022] |
| >Pja2P1 |
| TTCATGCTGGACGGAAACAACAATCTGGAAGACGACTCCAGCGTGAGCGAAGACCTTGAAGTGGACTGGAGCCTGTTTGATGGATTTGCAGATGGCCTGGGAGTGGCGGAAGCCATCTCCTATGTGGATCCTCAGTTCCTCACCTACATGGCTCTCGAAGAGCGTCTGGCCCAGGCGATGGAGACAGCCCTTGCCCACTTGGAGTCTCTTGCTGTTGATGTCGAAGTGGCTAACCCACCTGCAAGCAAGGAGAGCATT |
| >NM_001277278.1 |
| gccgccgctgcagccgctgcGCGTTCggcgggggaggagtcggaggcggagaagaaggcggtggtggcgggtggaggaTCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACATCTCGgaatcatttgcagcttattcactgtgtaaggaaaaaccaaattacatccataattctattgaactggaagcatagacgctgccatatatgtcacagtatacagaaaaagaaccatcagTAATGGATCAAGACTCCAGCAAGGCTGCGTGGCCTAGAGCAGCAGGAGGATACCAGACGATTACAGGCAGGAGGTACGGAAGGAGACATGCGTATGTCAGTTTTAAGCCATGTATGACCAGGCATGAACGGAGCTTGGGTCGGGCTGGCGATGACTATGAAGTTCTGGAACTGGATGACGTTGCCAAGGAAAACACCGCAGGTTCCAGTTCATTGGATCAAGTCCATCCTTCTTTACCCAGTGAAACTACAGTTGAAAAAAGTGAAACAGAAATTCCTACTTGTGGTCCAGCACTGAATCAAAGCACGGAGAGCAACCCATCCGTTGCCACAGTGTGTCATAGTGAGGAAGTCAGGGAGACCTTAGACAGCAGTACGAATCTTCAGAATCACGCTGAGAGAGAGTGTACGCCAGCAGTTTGTAATGCCTCAAGTGTCCAGAATGGAATTGTGTTGGTTCATACTGACTCTTATGATCCAGACAGCAAGCATGATGAGAATGACTCTCTTCAACTTTGTGCCCAAGCTGTGGAAGGTGGTAGACGTCAGAAGGTATTAGGCAATGCAGTCTTTGAGCTGGAAAATGGAGAGGTAGAGAGATATGCTGATCTGTGTCCCTCAGTTCCCTCTCTCAGTGGTGAAATAAGGGAGGAGTCTGAAGAGCTAGGTTCAGCACTCTTAGAGAAAAATTCTGCTGGCGATGCGGAGGCTGTCCATCAGGATGGGCAGGAATTTCAGAGGTCTTCTGAAGACGGCATTGTTAGAAAGAGGCGACAAGATGATACCGATCAGGGAAGACAGACAGAAAATTCAACTGAAGATGCAGACTGTGTTCCAGGCCATGTTGAACAAAATACTAGTGAGAGAGCCAATCACCATGGAAGTTCTCCTGAACAGGTAGTGAGGCCCAAAGTTAGAAAAGTGATCAGTTCAAGCCAGGTGGACCAAGAGAGCGGTTTTAATAGGCACGAGGCTAAGCAAAGAAGTGTTCAGAGGTGGAGAGAGGCTCTGGAAGTTGAGGAATGCAGTTCAGATGACCCTATAATCAAGTGTGACGATTATGATGGAGACCATGACTGCATGTTCCTAACCCCATCCTACTCAAGAGTTACGCCAAGGGAAGCAGAACGTCACCGTGCGACAGCAGAAAATGGAGCCACAGCTTCAGGAAGGCAAGAGGCTCGGGAAAATGCCTTTTGGAATGCCTGTGGAGAGTATTACCAGCTCTTTGACAAAGACGAAGACAGAGAACAGACGTCCTTGGAGGAGGGGGAGATTCCCTGGTTACAGTACAATGAGGTCAATGAGAGCAGCAGCGATGAAGGGAACGAGCCTGCCAATGAGTTTGCACAACCAGAAGCTTTCATGTTGGATGGGAACAACAACCTGGAGGACGACTCGAGCGTGAGTGAAGACCTGGATGTGGACTGGAGCCTATTTGATGGTTTTGCGGATGGACTTGGTGTTGCTGAAGCTATTTCCTACGTGGATCCTCAGTTCCTCACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCACTGGCACACTTAGAGTCTCTTGCTGTAGACGTTGAGGTGGCTAACCCACCTGCCAGTAAGGAAAGCATCGACGGACTTCCAGAAACCCTTGTCCTAGAAGATCACACCGCTATTGGTCAGGAGCAGTGCTGTCCCATCTGCTGCAGTGAGTACATTAAGGATGACATCGCAACAGAGCTGCCCTGCCATCACTTCTTTCATAAGCCTTGTGTCTCCATTTGGCTACAGAAGTCCGGAACGTGCCCTGTGTGCCGCCGCCACTTCCCACCTGCAGTGATTGACGCATCTGCAGCTGCTTCCTCTGAACCAGACCTTGATGCCTCGCCTGCAAACGACAATGCTGAGGAAGCCCCGTAAGCCGTCACGGGGAAATGAGATCGAAATTCTATCACAGTAAATCTGCAAATTCCTTCTAAATCTGATGTGCAAATAATTATATATAAATATATTTAAAATGCTCTATATAGTATATGCCGTAGTTTAGAAAGAGAATATTAACCTTTCTAAACTGAATTTAGGTTTGCAGAAGATACTAAACATTTTCAAGCTGAATGTTGAAGCAGTGCATCCATTTTCTTTAGTTGAACATGGTGTCCATTGTAACGTCAGTAGTCATCTCTGTGGCATACGTTTCTGTTTTGTCTGAAGTGCTGCCACTAAGAGATCAGAATTAAGCTCTCCTTTCCACATCAGATGTGAAAACTGTGATCACAACAGTAGTACAGTTTGGTTTCATTGAAAATAAACTGAATTCTAAAGCATGCTTTTTCACTGGTCCCTTTGCTTTTGCTACTTCGAGACCTCTTGGTTTATATAACACTGAGGTTAAGATTAAAGCTTTTCAGAATGCCAGGCAAAGACTAGAGTTTTGACCCGAACACACACACAAAATAAAAAAATAAAAAATAAATTACATCTTAGATGTAAACTTCCTGAAACTGTCATGTAATAAACTATTCAGTGAACGTTGGATGTGTTTAAAGGCTAGTAAAGCATGTGAATTATCTGATGTGCTTCATGCTCGGCACAGTCTCATGAGCTTGGCCTATGAAACACTGTCTAAGCCCTCATGCAGTCTGCTTCTACTTGTTAAACACTGAAGGTCCAGACCAGTCTTGGCATCTGATTAAGAAATTGGATGTAGTTAGCTAAGGTAGTTTGGGTTCTACTTTAGGAGATCTGAAGATTTGCACATGGCCATGTCTGTTACAGCATCACCCCAGATTAGAAAGGCACAGCTTTTAGGTGGTCACACGAGTAGGCAAGTCTGTGCAGACGCTGGTGTGATAGGTAGCTTACAGGTGAGCCCTGACATCAGCACAGGGACAACGGCTCAGCAGGCCCAGCACTGGAGCCCATCCGCGTGCACATCTACCTGCCCTGCTCATCCAGTTCGGGAATATTTCTATAGCTTCCCAAATCAGCTTCATCTGATTTGTGTAATATATCTGAGTATTTATAGTCTTTCTTTTTTCTCCAGTCTTAAAAATAAATGAATTTTCACTGTTGGCACATTTGAGGCTTAAATATAAGAAACCTAACACTTGCATTCTGATTTTTGCATATATTGTAAATGTGGCTGGTATTTACAGCGAATCCTGTGTGTCCTTTTATGGGTAAAACAAAAGTGAACATTGCATGCAAGTAATGTGGTGAATTTGTAATTTAGGGGTTTTCTGGGGCTTCTGTGACTGTGGATGCTTAAATTCAGGCCTTAATGTTGCTCTAGCTAGCATGTTTCCTTCTAATGTACATAGTCAGCCTGTATCCACTAATCTCTGCTTGTCTTCTCCTCCGTGGTCTTCACACCGTATCCACTGATGGTCAGTTAGTGTCAGAGGTCACCCAGGTTAGCATCAGTTCCCATGTGTGCCGTGCGGATTGTGAGCCGTGTGGTTGCTTGGTTGGTTTTCTTTTATGTACTTTGATTAGCTGTGGCACTTACTGAGTAAACTTACGTTGCTGCAGACTGCTGTGTAACAAGCCACGTTTTGTGTTTAGTCAGTATTACACACGGGACCTTGTTTTATTCTTCTAGATAGCAGCTGTCCCAAAGAAAATATTTCTTCTTTGCCTATTAAGATTTAGCTATTATCTGCCAGTTGTTAAGGGGTTTGATTCCAAACTCAACCAGAGTTGAACGTAAGAAAGCTGCTGTACTCTTGCTGTCCATCTGTTACGTCCTCCGTTGTTGGCTCCTGACTACGTACCCACGGCTGCTGAAGGAGACTTGTTTTAATTTGTTTTAAAAAGGAAAATGAAGTTTTAGGACTTTGATGGTGGGGAAGCTGACAAGTTCAGACCCCAGTCTGTCATTTGCTCTTAGCTTGGATCCTTTTGAAAAGTTAAGAATATATGAAGGTAAATTAGAAAAAGTAAAAATATTGATAAAatgtcatttatcttatgtctattttatgttGTTATTTGGCCTATTAATTTTAATTTTTTGAACATTTTCTTATTTCTTGTAATATGAATGCCGATATTTAAAGTTTGACTCACTTGGGTTTCTTTTGTGTTTCTTAGTTGTTATCTCTAAGCTAACTAACTTTTAAGATTATTTGTGATATGGATTTATATAAGCTGTTAAATATATATGAGCTGTTAAAATGGAATGCAAGGTTTTCCAAAGACCAGGTCTAACTGTAATGATTGGTTTATTGTTCTACAATCCCAGCCCGGCATTTTCCGTGTAAATCATAAACAATAAACAGGATATACTCAGTGTTCATTTCTAATA |
| PMID - Link | Title |
|---|---|
| No publications available for this retrocopy | |
