| Retrocopy Name | PJA2P1 |
|
| Species | Sus scrofa | |
| Coordinates | chrX:55276419-55276700 UCSC | |
| Strand | - | |
| Parental Sequence | XM_021085401.1 | |
| Parental seq. overlap | 237 bp | |
| Parental seq. overlap (%) | 4.1% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | PJA2P1, located on chrX:55276419-55276700, is a retrocopy of the parental gene PJA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | PJA2 |
| Full Name | praja ring finger ubiquitin ligase 2 |
| Also known as | - |
| Coordinate | chr2:114319972-114675761 |
| Strand | - |
| Gene summary | N/A |
| >PJA2P1 |
| TTCATGCTGGATGGCAACAACAACCTTGAAGATGACTCCAGTGTCAGTGAAGACCTCGAAGTGGACTGGAGCCTTTTCGATGGGTTTGCGGATGGGTTGGGGGTGGCTGAAGCCATTTCCTACGTGGATCCTCAGTTCCTCACATACATGGCACTTGAAGAACGTCTGGCCCAGGCGATGGAAACTGCCCTCGCACACTTGGAGTCTCTGGCGGTGGATGTGGAGGTGGCCAATCCACCAGCCAGCAAGGAGAGCATCGATGCTCTTCCTGAGATCCTTGTC |
| >XM_021085401.1 |
| AATCACAACGCGCCGCCCGCCGGCCCGCCCGGCGACGGCCTCCCGGAGCCCCTGCGATGGGAAGACCTCAGACGGCTTTTGTGACCTGGGAGGGAGTGTAGCCGGAGTTGCGGCCCTGAGAGGCGGTGAGGCTGTGCAGTCCGGGTTCTGCTGAGCTTTCTCCCCACTTCCTTTTCGCTGCCCAGTTTTCCTGTCCTTGATGTCCCGGGCCTGGCGTGTCTTGGACGGAAACTCGgcatcttctgtttactgctggcatccacgaaacagtaacaggcCCCAGACTCTTCACAGATCCTGAAACCACTCACCTGCCTAAGACTGACAACGTTGGCACAATTTCAACCTCCCTGTGCCTTTCTTCCCGGGGAAGGAAGCTGAGAGGGGATGAATCAAGTAACATAATAAACTTCTGAGAAGAAAAGAAGCTTCATATCAAGATTTGGAAAGAAGGGCAAATCTCTTAGTGAAGAAACTGCCAAGAAAATTACTGCTCACCTAGCTCAAAGAGAAACATTAATTAAAGgaatcttttgcagcttatccattgtgtgagtaaaaagtaaatcacatccataattccactgaactgggcacacaaaaactgccatatatgtcacagtatactgaaaaagagccggcagCAATGGATCAAGAATCCAGCAAGGCTGCCTGGCCCAAATCAGCAGGAGGATATCAGACAATCACAGGCAGGAGATATGGCAGAAGACATGCATATGTCAGTTTTAAACCATGTATGACCAGGCATGAAAGGAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAAGAAAATTCCTCAGGTTCCAGTCCATTGGATCAAGTTCATTCTTCGCCCAGTGACCCTTTATTTGAAAAAAGTGAAGCAGATATTCCCATTTGTGATACAGCATTGAATCAAAACGTTGAGAGCAGTCCGTCCTTTGCTGCAGTACATCATAGCGAGGAAGGCAGGGAGACCTTAGGAAGCAGTACAGATCTTCACAATCACGCTGAGGGAGATTATACTCCAGGAGCTTGTAATGCTTCAAGTGTCCAAAATGGAATTACATTGGTTCATACTGACTCTTTTGATCCAGATGGCAGACATGGAGAGGATAATGACCATCTTCAGCTTTCTGCAGAAGTTATGGAAGGTGATAGATACCAGGAAGCACTGGGCAATTCAATATTTGAGTTGGAAAATGGAGAGGTAGAGGCATACACTGGTGTTTCACCACCACTTCCCTCTTTTAACTGTGAATTAAAGAATGAGTTTGAAGAGTTAGATTCACCACCTTTAGTGAAAAGTTCTACTGATGATACCGAGTTTGTTGATCAGAACAATCAGGAATTTCAGAGATCCTCTTCTGAAGATGAAGTTATTAGAAAGAAACAACAAGAAAATACTAGCCAGGAGAGACAAAGAGAAAATTCAACTGAAGGTTCAGCCTGTGCTCCCAGGCATATTTGCAGTGAACAAAATACCAGTGATAAGAACAAAAACCAGGGAAGTTCTCCTGAACAGGTAGTGAGGCCCAAAGTTAGGAAAGTTATAAGTTCAAGCCAGGTGGACCAAGAAACAGGTTTTGGTAGGCATGAGGCTAAACAAAGAAGTGTCCAGAGGTGGAGAGAGGCTTTGGAGGTTGAGGAAAATGGCTCAGATGACCTCTTAATAAAATGTGATGACTATGATGGAGAGCATGACTGTATGTTCTTGGATCTGCCTTTCTCAAGAGTTACACAGAGAGAAACAGAAAATAACCAAATAACACCAGAAAATGGAGCCTCAGCAGGAAGGCAAGAAGTTGTGGATAACACATTTTGGAATGGCTGTGGAGATTACTACCAACTATATGACAAAGATGAAGATAGTTCAGAATGCAGTGATGGAGAATGGTCTGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAGTCCTCTAGTGATGAAAGCTGGGAGACTCTGCCAGGAAAAGATGAAAATGAACCTGAACTACAAAGTGATAGCAGTGGTCCTGAAGAAGAAAACCAAGAACTATCTCTTCAGGAAGGAGAACAGACATCCTTGGAAGAGGGAGAAATTCCTTGGTTACAGTACAATGAGGTCAATGAAAGCAGCAGTGATGAAGGAAATGAGCCTGCCAATGAATTTGCACAGCCAGAAGCTTTCATGTTGGATGGTAACAATAACCTTGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGACTGGAGCCTGTTTGACGGCTTTGCAGATGGACTAGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTCAGTTCCTGACTTACATGGCACTAGAAGAACGCTTAGCACAGGCTATGGAGACTGCCCTTGCACATTTAGAGTCTCTTGCAGTGGATGTTGAGGTAGCCAACCCACCAGCCAGTAAAGAGAGCATCGATGGTCTCCCAGAGACCCTTGTTCTTGAAGATCACACTGCTATTGGTCAGGAGCAATGCTGTCCAATCTGTTGCAGCGAGTATATTAAGGACGATATAGCGACAGAGCTACCTTGTCACCATTTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAGAAGTCAGGGACATGCCCTGTGTGCCGCCGTCATTTTCCACCTGCTGTGATTGAAACACCTGCAGCTGCTTCCTCTGAGCCTGATCATGATGCCCCACCTTCAAATGACAGTACTGCAGAAGCCCCCTAAACCCTAACACTTGAATGAGATCAGTCTATCAGAGTAAATCTGCCAATTCCTTCTAAATCTGATGTGCAAATAATTATATATAAATATATTAAAAATGCTATATATAGTCTATGCCATAGTTTAGAAAGAATATTAACCTTTCTAAACTAAATTTAGGTTTGCAGAAAGTACTAAACATTTTCAAGCTGAATGTTGAGCAGTGCATCCATTTTCTTTAGTTTAATATGTTATTAATTGTAAAGTCAAGCTTATCAACTAACTTTCTCCAGAAGAAATAATCCTCTATGTGGCACACATTGTTTTGTTCTGAAGTTCTGCCACTAAGTGATTCTAAGTAAGCTTTCCTGTCTATTTGCATCAAATGTGAAGACTGTGATCACAACAGTAGCCAAATTTGATTTTGTTGCAAATAAAAAAGAATTCTAAAGCATGCTTTTTCATTGGTCCCTTTGCTTTTGCTTCATCAAAACCTCTTAGTTCATAATACTGAGTGGTTTTATAAGAAGCTATCTACTCTTCCATCTTTGAAATTAAGGCTTTTTAGGATGCCAAACAAAACTTCTGGCTAGAGCATCATAAAATTTTAAAACCTTAAATGTAATCCCTAGGAAACGGTTAGGTAGTAAAATAAATTGTTATATTTTAATTGGTGGATGTGCTTAAAAGTAAGTTTAACAAAGCATATGAACAATGTCGTGTGCTCAGTGCTTGGTATAGTGAGGTGAATTAGATGGCCTTATGAAATCCTTTCTACTTGGATAAAATTATACTTGAAGGTCCAAAACACTCATGGCACATTTGTATAATAAATACTAGATATAGTTAAAGGTAACTTTGAAGTATTTTGGAAAGTCTGAAAACAAGCATAAAGTGTTTTAAAACACTCTTCCTGTTGTATCCCAAAGGAAAACCTGATACCTTAAAAAACTGAAAGATTAATTGTACTAAATTGTGTAAAGCATAAAATAGATGGGATATGAGACAGATTTGGCCACACCTTTTTACAACATATCTAAATCTGTGTTACATTTTTTTATTTTAAAGTATTGCTGAACAAGGATTATTCACATTATTTTATCAGCATTTGTTTCTTTACACTCATATATTTTGGTAAAATTATTCACTGTGGAACTAAAGTAAAAAATAAGTATTTTGAAATTAAGCCATGGGTGAAAAAGTAGATTGTATGATTGCCTAGTGACTTTGTGAACAGAACTGAGTATATAACAGTTCCTTCCTTATTTTCTGTAAAAGAGAAGAGAAGATGTTGACCTCAGATTTACCCTCTGAAAGAGTTGTGTTCACAAGCTTTTACAAAAGTGAGAAAATCAGCTTCCTTTTTTTTTCTTAACATGGGAAATTTGACCCATAGGATCGTCTTTGTAATTATATTACCAAACTAAAACTTAACAGCTTTCCATTTAGGTGATCACACCCCATAGGCAAGTGTGTGTCTACGTGAACATAATATTTAACTTGCAGGTGTTATTGGGTATCAGTCAGCACCAGAGAATGATGGGTGTTAGAGTGCCACATTTGAGCAAGTAAAAAGTAAAGCACATAGTGAGTGAACATCCATCCAAGTAGTATGTGCATCATTTAGCTTGGACACAGAAAAGGAATATTTATATGGCTTCCCAAGTGCAAAATAACTTTTTATTTGTGTAATTTCTCTGAGTATTTATATTCCATCTCTTTTCTCCTTTCTTAAAAGTGGATTTTCACTGTTGGCACATTTGAGTCTTAAATATAAGGAACATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTATTTACAGCAAAATACTGTGTATCCTTTTATGGGTAAAGCAGAATTGAACATTGCATGCATGTTATGTGGTGACTTTGTAATTTCGGGGTTCTTTGGGGCTTCTGTGACTTTAGAAATGCTTACATTCAGGCCTTAATGTTGCATTAGGTAGCATGTTTTCCTTCTGATGTATATAGTCACTGTTGTATAAACTAATCTTTGCTTGTTTTCTACTTTGTGATCTTTCCATACTGTATTTCATTGATGATCAGTTAGTGTCAAGGAGTCAAATCAGATTACAATTAATTTTCATGTGTATATTGTGGAAAAAATGTGACTCGTGTGATTTTTGTTGTTGTTGTTTGTTTCCTTTAAGTACTATTGATCAGTTGTGACACTTTACTGGTTAAACTGACAGTGCTACACATTTCTCTGTAATAAGCCACACATTATATTTAGGCAGTATAAAGGGACATTGGTTTTGTTCTCCTAGATAGCAGCTGTCCCAAAGAAAATATTTCTTCTTTGCCTGTTAAGATTTAGCTGTTATCTGCCAGTTGTTAAGTTTTGGTTCCAGATTCAACCAGCAGTGTTGAGAGCTGAACTTAAGATAGCTGTTGTACTTTTTGCTTTCCATCTGTTTCTGCCCTTCATTCTCAGCTCCCTACTATCTATAAACAGCTGCTATGAAGGAGAAAAGTTGAATAAGAGTTGGCTTAAAAATTCTTTTAAAAGAAAAATTGAAGTTTTAGAATTTTCATTGTAACAAACTAATGCAAGCTGAGGCTGACAAGTTAAGAGACCAGAATATTGTTTGATCACATCTTGGATCCTTTCAAAAAAGTAAAGAATatatgaaggtaaattagtagtataaatattaatacaaatattaTTTCTCTTATTTCTCTATTATATGTTAAGTGACTTGACCTAATTATTTTATTTTTTAAACATTTTCTCTCTTGTAATATGAATGCTGATATTTAAAGATAGATCTATGTGGTTTTCTTTTGTGTTTCTTAATTGTTTATCTCTACGTGGACTAACTCTTAAGATTATTTGTGATCTGAATTTATATATATAAGCTGTTAAATATATGTAAACTGTTAAAATGGAATGCAAGTTTTTGAAAAAGCCCTGGTCTAAATGTAATGATTGGTTTATTGTTCTACAACCGCAATTCATCATTTTTTGTGTAAATCATAAACAATAAACAGGATGTACTCAGTGGTCATTTCTAATA 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| PMID - Link | Title |
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