| Retrocopy Name | PJA2P1 |
|
| Species | Equus caballus | |
| Coordinates | chrX:54288452-54288722 UCSC | |
| Strand | - | |
| Parental Sequence | XM_001504586.4 | |
| Parental seq. overlap | 227 bp | |
| Parental seq. overlap (%) | 4.2% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | PJA2P1, located on chrX:54288452-54288722, is a retrocopy of the parental gene PJA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | PJA2 |
| Full Name | praja ring finger ubiquitin ligase 2 |
| Also known as | - |
| Coordinate | chr14:61828470-61905330 |
| Strand | + |
| Gene summary | N/A |
| >PJA2P1 |
| GTTCATGCTGGATGGAAACAACAACCTTGAAGATGACTCCAGTGTGAGTGAAGACCTAGAAGTGGATTGGAGCCTCTTTGATGGGTTTGCAGATGGGTTGGGGGTGGCTGAAGCCATTTCCTACGTGGATCCTCAGTTCCTTACGTACATGGCACTTGAAGAACGCCTGGCCCAGGCGATGGAAACAGCCCTTGCGCACTTGGAGTCCCTTGCGGTGGACGTGGAGGTGGCCAATCCGCCGGCAAGCAAGGAGAGCATTGACAGTCTTCCT |
| >XM_001504586.4 |
| ccgtcgccgccgccgctgccgccgcctgccgcTGCGCGTTCggcgggggaggagtcggaggcggagaagaaggcggtggtggcgggtggaggATCGAGCGCTGTTCTCGCTCCGGAGCCGCTGCACAGTTCGgaatcttctgcagtttatccattgtgtgagtaaaaactaaatcacattcataattccactgaactaggcacacgaaaactgccatatatgtcacagtatactgaaaaagagccagcagCAATGGATCAAGAATCCAGCAAGGCTGCCTGGCCCAAACCAGCAGGAGGATATCAGACAATCACAGGCAGGAGATATGGAAGAAGACATGCATATGTCAGTTTTAAACCATGTATGACCAGGCATGAAAGAAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAGGAAAATTCGTCAGGTTCCAGTCCAGTGGATCAAATTCATTCATCTTTACCCAACAACCCTTTATTTGAAAAAAGTGAAACAGAAGTTCCCATTTGTGATACGGCATTGAATCAAACCATTGAGAGCAGTCCATCCTTTGCTGCAGTACATCATAGCGAGGAAGGCAGAGAGGCCTTAGGAAGCAGTACGAATCTTCATAATCACTCTGAGGAAGAATATACTTCAGGAGCTTGTAATGCTTCAAGTGTCCAAAATGGAATTGCATTGGTTCATACTGACTCTTATGATCCAGATGGCAGACATGGAGAGGATAATGACCGTCTTCAGCTTTCTGCAGAAGTTGTAGAAGGTGGTAGATATCAGGAAGCATTGGGCAATACAATATTTGAGTTGGAAAATGGAGAGGTAGAGGCATATACTGGTCTTTCCCTGCCAGTTCCCTCTTTTAACTGTGAAGTAAGAGATGAGTTTGAAGAGTTAGATTCAGCACCTTTAGTGAAAAATTCTGGTGATACTGAGTTTGTCAATCAGAACAATCAGGAATTTCAGAGGTCTTCTTCTGAAGATGAAGTTGTTAGAAAGAAACAACAAAATAATACTAGCCAGGAGAGACAGAGAGAAAATTTAACTGAAGATTCAGCCTGTGCTCCGGGGCATATTTGCAGTGAACAAAATACTAGTGATAGGGACAAGAACAGGGGAAGTCCTCCTGAACAGGTAGTGAGGCCCAAAGTTAGAAAACTGATAAGTTCAAGCCAGGTGGACCAAGAAACAGGTTTTAATAGGCATGAGGCTAAGCAAAGAAGTGTTCAGAGGTGGAGGGAGGCTTTGGAAGTTGAGGAAAACGGCTCAGATGACCTCTTAATAAAATGTGATGACTACGATGGAGAACATGACTGTATGTTCTTGGATCCACCTTACTCAAGGGTTACACAGAGGGAAACAGAAAATAACCAAGTAACACCAGAAAGTGGAGCCATAGCAGGAAGGCAAGAAGTTGTGGATAACACCTTTTGGAATGGCTGTGGAGATTATTACCAACTATATGACAAAGATGAAGATAGTTCAGAATGCAGTGATGGAGAATGGTCTGCTTCTTTGCCTCATCGGTTTTCTGGTACAGAAAAAGATCAATCCTCAAGTGATGAAAGCTGGGAGACACTGCCGGGAAAAGATGAGAATGAACCTGAACTACAGAGTGATAGCAGTGGTCCTGAAGAAGAAAACCAAGAATTATCTCTTCAGGAAGGGGAACACACATCCTTGGAAGAGGGAGAAATTCCTTGGTTACAGTACAATGAAGTCAATGAAAGCAGCAGTGATGAGGGAAATGAGCCCGCCAATGAATTTGCACAGCCAGAAGCGTTCATGTTGGATGGCAACAATAACCTTGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGACTGGAGTCTGTTTGATGGCTTTGCGGATGGACTAGGCGTTGCTGAAGCTATTTCGTATGTGGATCCTCAGTTCCTCACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCCCTGGCACATTTAGAATCTCTTGCAGTGGATGTTGAGGTAGCCAATCCACCAGCTAGTAAGGAGAGCATTGATGGTCTTCCAGAAACCCTTGTTCTCGAAGATCACACTGCTATTGGTCAGGAGCAGTGCTGTCCAATCTGTTGCAGTGAATACATTAAGGATGACATAGCAACAGAGTTACCCTGTCACCATTTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAGAAGTCGGGAACATGCCCTGTGTGCCGCCGTCATTTTCCGCCTGCGGTTATTGAAGCTTCTGCAGCTGCTTCCTCCGAGCCTGATCACGATGCCCCACCCTCAAATGACAGTACCACAGAAGCCCCCTAAACTTCAACACTTGAATAAGATCAGTCTATCAATCTGCAAATTCCTTCTGAAACTGATGTGCAAATAATTATATATAAATATATTAAAAATGCTATATATAGTCTATGCCATAGTTTAGAAAGAGAATATTAACCTTTCTAAACTAAATTTAGGTTTGCAGAAAGCACTAAACATTTTCAAGCTGAATGTTGAAGCAGTGCATCCATTTTCTTTAGTTGAATACGTTGATATTAATTGTAAAGTCAAGCTTATCACTTAACTCTCTCCAGAAGAAATAATCATCTATGTGGCACACATTATTGGTTTTGTCTGAAGTACTGCCACTAAGTGATTATAATTAAGCTCTCCTATTTGCATCAAATGTAAAGACTATGATCACAACAGTAGTAAAATTTGGTTTCATTGGAAATAAAAAGAATTCTAAAGCATACTTTTTCACTGGTCCCTTTGCTTTTGCTACATCAAAACCGCTTAGTTCATAATACTGAGTGGTTTTTTAGGAAGGTGTTTACTCTTCCATCTTTGTTTAAAATTAGGATTTTTAGAATGCCAAAACAAAAGCTAAAATTCTGGCTAGAGCATCACAAAACTTTTAAATCTTAAATGTAATCTAAAATGGTTGAGTAGTAAAATAATTTTTTTAATGGTGGATGTGCTTAAAGTATGGTTAGTAAAGCGTATGAATGCTCTGCTATGGCTAGTCTGGCAGTAAGGTTAGTAAAGCATATGAACAACTAGTGtgctcagtgcttggtacaaggagatgaattagatggccttatgaaatcctttctacttgcttaaaattataCTTGACGGTCCAAAACACTCATGGCACATTTGTTTAATAAATATTTCGTATAGTTAGTTTAAGGTAATTTTGGTTCTGAAATATTTTGGAAAGTCCAAAAACATTCATAAAGTGTTTAAACAGTTGTTATTTGTATCCCACAGGAAAATCTGAATCCTTAAAAAACTAGAAGGTTAAATAGTACTACCCTGTATAAAGCTTAAAAATGATGGGGTATGGGTCAGATTTGGTCATACCTTTTTACGTCATATCTAAACCTTACTGTGTTATAATTTATTCCTTTAAAGTATTCCTGAACAAGGATTATTAATCTTACATTATCAGCATTTGTTTCTTTACACTAATTTATTTTGGTAAAATTATTTACCTGGACTAAAACAAAAGTAGATAGTTTCAAATTAAGCCAATGGTGAAAAGGCAGTAGATTATATGATTGCCTAGTGACTGTGCGAACAGAACTGAACGTTTAACATGTTTCCTTTGTTTTCCTCTCTGTAAAAGAGAAAAGAAGATCCTGAGCTCAGATTTACCCTCAAAAAGAGCTGTTCACAAGCTTCTACAAAAGTGAGGAAATCAGCTTTCCTTATTCTTTTTATGGGAATTTGACCCACAGGGTCATCTTTGTAATTATATAACCCCAAACTAAGATTGTATAGCTTTCCACTTTAGGTGATCACACCCAATAGGCAAGTATGTACAAACATGGATGTCATATTTAACTTACAGATTTGATGTCAACACCAGAGAATGCTGGGTGTTAGAATACCTTATTTGAGCAAGTAAAATAGTAAAGCACATAGTGAGTGTACATCCATGCAAGTAGTACATTGATAATTTAGGTTGGACATGTAAAAGGAATATTTATATGGCTTCCCAAATGCAAAATTCCATTTTATTTGTGTAATTTCTCTATTTATATTCCATCCCTTTTCTCCATTCTTAAAAATAAATGAATTTTCACTCTTGGCACATTTGAGGCTTAAATATAAGGAACATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTATTTACAGCAAAATACTGTGTATCCTTTTATGGGTAAAACAAAACTGAACATTGCATGCATGTAATGTGGTGACTTTGTAATTTAGGGATTCTTTGGGGCTTCTGTGACTTTGGAAATGCTTATATTCAGGCCTTAATGTTGCATTAGCTAGCATGTTTTTCTTCTGATGTATATAGTCACTGTTATATAAACTAATCTTGGCTTGTTTTCTACTCTGTGATCTTTCCATGCCATATTTCGTTGATGATCAGTTAGTGTCAAGGAGTCAGATCAGATTAAAATTAATTCTGTGTATATTGTGGAAATTTGTGGTTAGTGTGATTTTTTAAATTTTGTTTTGTTTCTGGAAATTTGTGGCTAATGTGATTTTTTTGTTGTTGTTATTTGTTTCCTTTAAGTAATATTGATCAGTTGTGACACTTACTGGTTAAATTGACATTGCTACAGATTTCTCTGTAATAAGCCACACGTTCTATTTAGGCAGTATTAAGGGACCTTGGTTTTCTTCTCCTAGATAGCAGCTGTCCCAAAGAAAATATTTCTTTTTGCCTGTTAAGGCTTAGCTATTATCTGCCAGTTGTTAAGAGGTTTTGGTTCCAAACTCAGCCAGCAGTGTTGAGAGCTGAACTTAAGATAGCTGTTGTACTTTTGCTTTCCATCTGTTTCTGTCCTTCATTCTTGGCTCCCTGCTCTCTATAAACAGCTGCTATGAAAGAGAAAAGTTGAGTAAGAGTTGTAAGATTTTTTTTTTAAAGAAAATTGAGATTTTAAGGTTTTCGTTGTAAGAAACTGAAGCTGATAAGTTTAGACGCCAAAATATTCTTTGATCACATCTTGGATCCTTTTGAAAAAGATCAGAATATATGAAGGTAAATTAGAAATAGGTATAAATGTTAATAAAAACGTTCTTTCTCTTATTTCTCTATTATATGTTAAGTGACTTAACCTAATAATTTTATTTTTTTTAGACATTTTCTTCTTTCTTGTAATATCAATGCTGATATTTAAAGGTAAATCCTTGTGGTTCTCTTTTGTGTTTCTTAATTGTTTATCTCTAAGCTTCTAATTCTTAAGATTATTTGTGATCTGGATTTATATATAAGCTGTTAAATATATATGAACTGTTAAAATGGAATGCAAGTTTTTCAAATGCCCAGGTCTAAATGTAATGATTGGTTTATTGTTCTACAACCCCAATCCATCATTTTCCGTGTAAATCATAAACAATAAACAGGATATACTCAGTGGTCATTTCTAATA 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