Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PJA2P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_4) and its respective parental gene (in scaffold_m19_p_5). Each line represents a retrocopy.
Species Myotis myotis
Coordinates scaffold_m19_p_4:84929569-84929826  UCSC
Strand +
Parental Sequence PJA2_x2
Parental seq. overlap 217 bp
Parental seq. overlap (%) 4.2%
Genomic Region Intergenic
Retrocopy Summary PJA2P1, located on scaffold_m19_p_4:84929569-84929826, is a retrocopy of the parental gene PJA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PJA2
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_5:64247177-64313457
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PJA2P1
Chimpanzee Pan troglodytes PJA2P1
Bonobo Pan paniscus PJA2P1
Gorilla Gorilla gorilla PJA2P1
Orangutan Pongo abelii PJA2P1
Gibbon Nomascus leucogenys PJA2P1
Green monkey Chlorocebus sabaeus PJA2P1
Crab-eating macaque Macaca fascicularis PJA2P1
Rhesus Macaca mulatta PJA2P1
Baboon Papio anubis PJA2P1
Golden snub-nosed monkey Rhinopithecus roxellana PJA2P1
Marmoset Callithrix jacchus PJA2P1
Mouse lemur Microcebus murinus PJA2P1
Mouse Mus musculus Pja2P1
Rat Rattus norvegicus Pja2P1
Chinese hamster Cricetulus griseus Pja2_1P1
Rabbit Oryctolagus cuniculus PJA2P1
Pig Sus scrofa PJA2P1
Cow Bos taurus PJA2P1
Sheep Ovis aries PJA2P1
Dolphin Tursiops truncatus PJA2P1
Horse Equus caballus PJA2P1
Dog Canis familiaris PJA2P1
Panda Ailuropoda melanoleuca PJA2P1
Cat Felis catus PJA2P1
Pale spear-nosed bat Phyllostomus discolor PJA2P1
Velvety free-tailed bat Molossus molossus PJA2P1
Greater horseshoe bat Rhinolophus ferrumequinum PJA2P1
Egyptian rousette Rousettus aegyptiacus PJA2P1
Sloth Choloepus didactylus PJA2P1
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PJA2P1
CTTCATGCTGGATGGCAACAACAACCTCGAAGATGACTCCAGCGTGAGTGAAGACCTAGAAGTGGATTGGAGCCTCTTTGATGGGTTTGCAGATGGGTTGGGGGTGGCCGAAGCCATTTCCTACGTGGATCCTCAGTTCCTCACGTACATGGCACTTGAAGAACGCCTGGCACAGGCAATGGAAACGGCCCTCGCACACTTGGAGTCTCTTGCAGTGGACGTGGAGGTGGCCAATCCACCAGCAAGCAAGGAGAGCAT
>PJA2_x2
ggagaagaaggcggtggtggcgggtggaggaTCGAGCGCTGTTCTCGCTCCGGAGCCGCTGCACAGTTCGgaatcttctgcagcttatttactgtgtgagtaaaaactaagtcacatccaaaattccattgaactgggcacacaaaaactgccatatatgtcacagtttactgaaaaagagccagcagCAATGGATCAAGAATCCAACAAGGCTGCCTGGCCCAAACCAGCAGGAGGATATCAGACAATCACAGGCAGGAGATATGGAAGAAGACATGCCTATGTCAGTTTTAAACCTTGTATGACAAGGCATGAAAGAAGCTTAGGTCGAGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAGGAAAATTCCTCAGGTTCCAGTCCATTGGATCAAGTTCAGTCTTCTTTACCCAACAATCCTTTATTTGAAAAAAGTGAAACAGAAATTCCCATTTGTGATACAGCATTGAATCAGACCATTGAGAGCAGTCCATCCTTTGCTGCAGTACAACATAGTGGGGAAGGCAGGGAGACCTTAGGAAGCAGTACAAATCTTCATAATAACTCTGAGGGAGAATATACTCCAGCAGCCTGTAATGCCTCAAGTGTCCAAAATGGAATTGCATTGGTTCATACTGACTCTCATGATCCAGATGGCAGACATGGAGAGGAGGATAATGACTGTCTTCAGCCATCTCCAGAAGTTGTGGAAGGTGGTAGATATCAGGAAGCTTTGGGCAGTACAATATTTGAGTTGGAAAATGGAGAGGTAGAGGCAAATACAGGTCTTTTACCACCAGTTCCCGCTTTTAGCTGTGAAAAACGAGATGATTTTGAAGAGTTTGATTCAGCTCCTTTAGTGAAAAGTTCTACTGGTGACATTGTCAGTCAAACCAATCAGGAATTTCAGAGGTCCTCTTCTGAAGAGGAGATTATTAGAAAGAAAGAACAAAATAATACTAGCCAGGAGAGAAAGAGAGAAAATTCAACTGAAGATACAGCCTGTGCTCTGGGGCATATTTGCAGTGAACAAAATGGCTCAGATGACCTCTTGATAAAATGTGATGACTACGATGGAGAACATGATTGTATGTTCTTGGATCTACCTTTTGCACGAGTTACACAGAGTGAAACAGAAAATAACCAAATAACATCAGAAAGTGGAGCCACAGCAGGAAGGCAAGGAGTTATGGATAACACCTTTTGGAATGGCTGTGGAGATTATTACCAACTGTATGACAAAGATGAAGACAGTTCAGAGTGCAGTGATGGAGAATGGTCTGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAGTCCTCAAGTGATGAAAGTTGGGAGACTCTACCAGGAAAAGATGAAAATGAACCTGGACTACACAGTGATAGCAGTAGTCCTGAAGTAAACCAAGAATTATCTCTTCAGGAAGGGGAACAGACATCCTTGGAAGAGGGAGAAATTCCTTGGTTGCAGTACAATGAAGTCAATGAAAGCAGCAGTGATGAGGGAAATGAGCAGGCTAATGAATTTGCACAGCCAGAGGCTTTCATGTTGGATGGTAACAATAACCTTGAGGATGACTCCAGTGTGAGTGAAGATTTAGATGTGGACTGGAGTCTGTTTGATGGCTTTGCGGATGGATTAGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTCAGTTCCTCACCTATATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCCCTGGCACATTTAGAGTCTCTTGCAGTAGATGTTGAGGTAGCCAATCCACCAGCCAGTAAGGAGAGCATTGATGGTCTTCCAGAGACACTTGTTCTTGAGGATCACACTGCTATTGGTCAGGAGCAGTGCTGTCCAATCTGTTGTAGTGAGTATATCAAAGATGATATAGCAACAGAGTTACCCTGCCACCATTTTTTTCACAAACCTTGTGTCTCAATTTGGCTGCAGAAGTCAGGAACATGCCCTGTGTGCCGTCGTCATTTCCCACCTGCAGTTATTGAAGCATCTGCAGCTGCTTCCTCTGAGCCTGGTCACGATGCCCCACCTTCAAATGACAGTACTGCAGACGCTCCTTAAACCTTAACACTTGAATGAGATCATTCTATAAAGTAAATCTGAAAATTCCTTCTAAACCTGATGTGCAAATAATTATATATAAATATATTAAAATGCTATATATAGTCTATGCCATAGTTTAGAAAGAGAATATTGACCTTTCTAAACTAGTATAGGTTTGCAGAAAGTACTAACATTTTCAAGCTGAATGTTGAAGCAGTACATCCAGTTTTTTTTTTTAGTTGAAGGTGTTGATATTAATTGTAAAAGTTAAGCTGATCATTTGACTCTCTCCAGAAGAAATAATTATCTGTGTGGCACGCGTTACTGGTTTTGTCTGAATATTGCCACTAAGTGATTATAATTAGCTCTCCTATTTGCATCAAATGTGAAGACTATAATCACAACAGTAGTAAAGTTTGGTTTCATTGGAAATAAAAAGAATTCTAAAGCATGCTTTTTCATTGGTCCCTTTGCTTTTGCTACATCAAAACCTCTTGGTTTATAATACTGAGTGGTTTTTTAGGAAGGTGTCTATAGTCTTCCATCTTTGTTTAAAATTAGGACTTCTAAAGAATTTCAAACTGGCTAAAATTGTGGCTGAGCATCACAAAATTTCAAAATCTTATATGTAACCCCCTGGAAATGGGTAGGTAGTAAGATAAATTATTTTTTTAATGTTGGATGTGCTTAAAGTCAGGTTAGTAAAGCATATGAACTATCTAGTGTGCTCAGCGCCTGGTGAATTAGATGGCCTTATAGAAATTCTTTCTACTTGGTTAAAATGATACTTGAAGGTTCAGAACACCCCTGGCACATTTGTTTAATAACTATTAGGCATAGTTATTGTAAGATGATTTTGGTTCTGAAATATTTTAGAAAGTCTGAAAACATGCATAAAGGGTTTTTAACACTCATTCTATTGTATCCTAAAGGAAAATCTGAATCCTTAAAAAAACTATGTTAACTGTTCTGACTTGTATAAAGCATAAAATTGATGGGGTATAGGACAAAATTGATCATACCTTTTTTACAACATATCTAAACTTTACTATGTTATAATTTATTTCTTTAAAGTTTCCTGAACAAATATTATTTATATCACATTATCAGTATTTGTTTCTTTACACTAATTTATTTTGGTAAAATTATTCACCTGGAACTAAAATAAAAATAAGTAGTTTCAAATTAAGCCAAATTAAGCCATGGCTGAAAAGGAAGTAGATTATATGATTGCCTAGTGACTGTGTGAACAGAACTTAACATGTAACACAGCTTCTTTCTTATTTTCCTTTGTTTAAAGGAGAAAAGAAGATCCTGACCTCAGATTTACCCTCTAAAAGAGTTTTCTGTTCAAAAGCTTCTTCTACAAAAGTAAGGAAGTCAGTTTTCCTTATTCTTTTTATGGGAAATTGACCTACAAGGCCATCTTTGTAATTACATAACCCCCAACGAAGACTGCACAGCTTTCTGCTTAGGTGATCTCAACCAATAGACAATTATGTATAAACATGGATGCAATATTTAACTTATGGATATGATTTGATATCAAACACCAGAGAATGATGGCTGTTAGAATACCACATTTGAGCAAGTAAAATAGTAAAGCACATAGTGAGTGTACATCCATTTGAGTAGAAAATTTATAATTTAGTTTGGACATATAAAAGGAATATTTATGTGGCTTCCCAAATGCAAAATTACATTTATATGTGTAATTTCTCTGAGTATTTATATTCCATCTCTTTTCTTCATTCTTAAAAATAAGTGAATTTTCACTGTTGTCATATTTGAGGCTTAAATATATAGGAATATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTATTTACAGCAAATACTGTGTATCCTTTTATGAGTAAAACAAACTGAACATTGCATGTATGTGATGTGGTGACTTTGTAACTTAGGGGTTCTTTGGGGCTTCTGTGACTTTGGAAATGCTTACATTCAGGCCTTAATGTTGCATTAGCTGGCATGTTTTCCTTCTGATGTACATAGTCTCTGTTGTATAAACTAATCTTTGCTTGTTTTCTACTCTGTGATCTTTCCACATCATATTTCATTGATCAGTTAGTGTCAAGGAGTCAAATCAGATTAAAATGAATTCTCATGTGTATATTGTGAAAATTTGTGACTAGTATGATTTTGTTTGTTTCTTTTTTGGTTTCCAGAAATTTGTGGCTAGTGTTTTTTTATGTTGTTGTTTTTCCCTTTAAGTAATATTGATCAGTTACTGGTTAAACTGACTGCTACAGATTTCTCTTTAATAAGCCACACGTTATATTTAGGCAGTATTAAGGGAGCTTGGTTTTTTTCTCCTAGATAGCAGTTGTCCCAAAGAAAATATTTCTTCTTTGCCTGTTAAGATTTAGCTATTATCTGCCAGTTGTTAGGCAGTTTTGGTTCCAAACTCAACCAGCAGCGTTGAGAGCTGAATTTAAGATAGCTGTTGTACTTTTTGCTTTCCATCTGTTTCTGTCCTTCATTCTTGGCTCTCTGTTACCTATAAACAGCTGTTATGAAGGAAGAAAGTTAAATAAGAGTTGGATTATAAAAATTTTTTAAAAGAAAATTGAGGTTTTAGGTATTTTCATTGTAACAAGCTGATAAAAGCTGAGGCTGACAAGTTCAGACACCAGAATATTGTTTGGTCAGATTTTGGATCCTTTTGAAAAAGTTAAGACTACATGAAGGTAAATAAGAAATAAGTATAAATAATAAAAATGTTTTTTCCCTTACTTCTCTATTATATGTTAAGTTACTTGACCTAATAATTTTTCTTTTACATTTTCTTCTTGTAATATAAATGCTGATATTTAAAGATAGATCCATATGGTTTTCTTTTGTGTTGCTTAATTGTTTATCTGTAAGCTAACTCTCAAGATTATTTGTGATCTGGATTTATATATAAGCTGTTAAATATGTATGAACTGTTCAAATGGAATGCAAGTTTTTCAAAAGCCCAGGTCTAAATGTAATGATTGGTTTATTGTTCTACAACTCCACTCTCATTTTCTGTAAATCATAAACAATAAACAGGATATACTC

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