| Retrocopy Name | Pja2P1 |
|
| Species | Mus musculus | |
| Coordinates | chrX:98510376-98510638 UCSC | |
| Strand | - | |
| Parental Sequence | NM_144859.2 | |
| Parental seq. overlap | 219 bp | |
| Parental seq. overlap (%) | 4.8% | |
| Genomic Region |
Intragenic (Ola1) |
|
| Retrocopy Summary | Pja2P1, located on chrX:98510376-98510638, is a retrocopy of the parental gene Pja2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Pja2 |
| Full Name | praja ring finger ubiquitin ligase 2 |
| Also known as | Neurodap1|mKIAA0438 |
| Coordinate | chr17:64588001-64638878 |
| Strand | - |
| Gene summary | Predicted to enable protein kinase A catalytic subunit binding activity; protein kinase A regulatory subunit binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including long-term memory; regulation of macrophage activation; and regulation of signal transduction. Predicted to be located in cytoplasm; intermediate filament cytoskeleton; and plasma membrane. Is expressed in nervous system and testis. Orthologous to human PJA2 (praja ring finger ubiquitin ligase 2). [provided by Alliance of Genome Resources, Apr 2022] |
| >Pja2P1 |
| TTCATGCTGGATGGAAACAACAACCTGGAAGATGACTCCAGCGTGAGCGAAGACCTCGAAGTGGACTGGAGCCTGTTTGATGGGTTTGCCGATGGCTTGGGAGTGGCCGAAGCCATCTCCTACGTGGATCCTCAGTTCCTCACCTACATGGCTCTGGAAGAGCGTCTGGCCCAGGCAATGGAGACGGCCCTGGCACACTTGGAGTCTCTCGCCGTTGATGTCGAAGTGGCCAACCCACCAGCAAGCAAGGAGAGCATTGATGC |
| >NM_144859.2 |
| GGGGGAGGAGTCGGAGGCGGAGAAGAAGGCGGTGGTGGCGGGTGGAGGATCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACATCTCGGAATTATTCTCAGCTTATTCACTgtgcaagaaaaaaacaaattacatCCATAATTCTACTGAACTGGAATCATAGACGCTGCCATATATGTCACAGTACACTGAAAAAGAGCCATCAGTAATGGATCAAGAATCCAGCAAGGCTGCTTGGCCTAAACCAGCAGGAGGATATCAGACTATCACAGGCAGGAGATATGGAAGAAGACATGCGTATGTCAGTTTTAAGCCATGTATGACCAGGCATGAAAGAAGCTTGGGTCGGGCtggtgatgactatgaagtgttgGAACTAGACGATGTTCCAAAGGAGAACACCTCAGGTTCCAGTTCATTGGATCAAGTCCATCCTGCTTTACCAAATGAACCTACAGTTGAAAAAAGTGAAACAGAAATTTCTACTTGTGGTCCAGCACTGAATCAAAGCACTGAGAGCAGTCCATCCATTGCCACAGTATGTCATAGTGAGGAAGTCAGGGAGACCTTAGAAAGCAATACAAACCTTCATAATCGCACTGAGACAGAGCATACTCCAGCAGTTTGTAATGTCTCAAGTGTCCAGAATGGAATTATGTTGGTTCATACTGACTCTTATGATCCAGACAGCAAGCATGATGAGAATGGCTCTCTTCAACTTGGCGCTGAAGCTGTGGAAGGTGGTAGACATCAGAAGGGGTTAGGCCGTGCAGTCTTTGAGCTGGAAAATGGAGAGGCAGAGATCTACGCTGACCTGTCACCATCAGTCCCCTCTCTCAACGGTGAAATAAGTGAGGCGTTTGAAGAGCTAGATTCAGCACCTTTAGAGAAAAGTTCTACTGCCGATGCTGAGCTTGTCCATCAGAATGGGCAGGAATTTCAGAGGTCTTCTGAAGATGGCGTTGTTAGAAAGAGGCGACAAGACGATACTGAtcagggaagacagacagaaaattcAACTGAAGATGCAGACTGTGCTCCAGGCCATGTTGAGCAAAATACTAGTGATAGAGCCAACCACCATGGAAGTTCTCCTGAACAGGTAGTAAGGCCCAAAGTTAGAAAAGTGATAAGTTCAAGCCAGGTGGACCAAGAAATTGGTTTTAATAGGCACGAGGCTAAGCAGAGAAGCgttcagagatggagagaggcttTGGAAGTGGAGGAGTGCAGTTCAGATGACCCTATAATAAAGTGTGACGATTATGATGGAGACCACGACTGCATGTTCCTAACTCCAACTTACTCAAGAGttacacaaagggagacagaacgGAATCGTGTAACATCAGAAAATGGAGCTACAGCTTCAGGACGGCAAGAATCTCGGGACAATGCCTTTTGGAATGCCTGCGGAGAGTATTACCAACTCTTTGACAAAGATGAAGACAGGGAACAGACATCCTTGGAAGAGGGAGAGATCCCTTGGTTACAGTACAATGAGGTCAATGAGAGCAGCAGCGATGAAGGGAATGAGCCTGCCAATGAGTTTGCACAGCCGGAAGCTTTCATGTTGGATGGGAACAACAACCTTGAGGACGACTCGAGCGTGAGTGAAGACTTGGATGTGGACTGGAGcctgtttGATGGTTTTGCAGACGGACTTGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTCAGTTCCTTACCTACATGGCACTAGAAGAGCGCTTAGCCCAGGCTATGGAGactGCGCTGGCACATTTAGAGTCCCTTGCAGTAGACGTTGAGGTGGCCAATCCACCTGCCAGTAAGGAAAGCATTGATGGGCTTCCAGAGACTCTGGTTCTAGAGGACCACACCGCCATCGGCCAGGAGCAGTGCTGTCCCATCTGCTGCAGCGAGTACATCAAGGATGACATTGCCACAGAGCTGCCTTGCCATCACTTCTTTCATAAGCCCTGTGTCTCCATCTGGCTACAGAAGTCCGGAACATGCCCTGTGTGCCGCCGTCACTTCCCACCTGCAGTTATTGACGCATCTGCAGCtgcttcctctgaccctgaccctgatgCCTCGCCTGCAAATGACAATGCTGAAGAAGCCCCATAAACCATCACGTGGAAATGAGATCAAAATCCTACACAGTAAATCTGCAAATTCCTTCTAAATCTGATGtgcaaataattatatataaatatatttaaaatgctcTATATAGTATATGCCATAGTTTAGGAAGAGAATATTACCCTTTCTAAACTGAACTTAGGTTTGCAGAACACACTAAACATTTCCAGCTGAGTGTTGAAGCCGTGCATCCCTTTTCTTCGGTTGACCATGGTGTTGATTGTGACGTCAGCAGTCATCTCTGTGGCACACCTTTCCCTTTTGTCTAAAGTGCTGCCACTAAGAGATCATCCTTACGCTCCCTTCCCACATGAGATGTGAAGACTGTGGTCACAACAGTAGTAGTACAACTTGGTTTCATTGAAAATAAACTGAATTCTAAAGCATGCTTTCTCACTGGTCCCTTTGCTTTTGCTACATCGAAACCTCTTGGTTTATAACAATACTGAGAAGGTTAAGATTGGAGCTTTTCAGAATGCCAAACAAAGACTAAAGTTTTGACCAgaacaccaaaaaataaaaaaataataataaaaatacatcttgGATGTAAACCTCCTGAAATGGTCACGTAATAAACTCTTCAGTGAGCACTGGATGTGTTTAACGGCGAGTAAAACATGTGAATAATCGGATGTGCTCCATGCATGGCACAGTTCATGGTTTGGCCTTATGAAGCACTGTCTAAGCCCCGATCCAGTCTGCTTCTACTTGTTAAATACTTGAAGGTCCAGGACACTCTTGACATGTTTGTTTAAGAAGTTGGATATAGTTAGCTTAAAGTAGTTTGGGTTCTACTTTAGAAGGTCTGAAGGTTTGCACATGGTCATGTTCATAACTATATCACCCCCATAAGAGGTGCACAGCTTTTAGGTGATCACAGGAGTGGGCAAGTGTGTATAGACATCGGTGTAACGGGTCGCTCACGAGTGAAACCAGACATCAGCACTGGGGAACAATGGCTTAGACGGCATAGAGCGAGTGTGCACCCACCTGCTCCTCTGCTCATAGTGTCGGGAATGTTTATGTAGCTTCCGAAATGCAGTTTCATTTAATAGCTCTGTGTAATATCTCTGagcattttatattctttctttttttccagtcttaaaaataaatgaattttcacTTTTGGCACATTTGAGGCTTAAATATAAGAAACATAACACTTGCTTTCTGATTTTTGCATATATTGTAAATGTGGCTGGTATTTACAGCAAATACTGTGTATCCTTTTATGGGTAAAACACAAGTGAACATTGCATGCAAGTAATGTGGTGAATTTGTAATTTAGAGGTTTTCTGGGGCTTCTGTGACTTTGGATGCTTAAATTGAGGCCTTAATGTTGCTCTAGCTAGCATGTTTCCTCCTGATGTATATAGTCAGCGTTGTATAAACTAATCTCTGCTTGTTTTCTACTCTGTGATCTTTCCATACCGTATTTCATTGATCAGTTAGTGTCAGAAGTCATACCAGAGTAACATTAGTTCCTATGTGTATACTGTGGATATTTGTGAattgtgtggtttgtttgtttgttttcttttatgtactGTTGACTAGTTATGGCACTTACTGATTAAACTTACACTGCTGCAGATTGCTGTGTAACAAGCCACATGTTATGTTTAGTCACTATTATGGGACCTTGGTTTTTCTTCTAGATAGCAGCTGtcccaaagaaaatatttcttctttgcctATTAAGATGTAGCTATTATCTGCCAGTTGTTAAAGGGGTTTGGTTCCAAACTCAACCAGAGAGTTGAACGTAAGAAAGCTGTTGTACTTTTTGCTTCCCATCTGTTACCGTCCCTCACTGTTGGCTCCTTACTACGCATACACAGCTGCTGTGGGGAGAAAGCTGAATGAGActtgtttcaatttttttagaaaagaaaatgaagttttaGGACTTTCATGGTAACAAACCTGACAAGTTCAGACCCCAGTATATTATTTGATCTTATCTTGGATCCTTTTGAAAAGTTAAGAATATATGAAGGTAAATTAGAAATAGTGAAAATATTGATAAAATGTCATTTATCTTATTTCTCTATTTTATGTTGTTACTTGgcctattaattttaattttttgaacattttcttaTTTCTCGTATGTGAATGCTGATATTTAAAGTTCAACTCATGTggatttcttttgtgtttcttagTTGTTATCTCTAAGCTAACTAACTTTTAAGATTATTTGTGATATGGATTTATATATAAGCTGTTAAATATATATGAACTGTTAAAACGGAATGCAAGGTTTTCAAAAGCCCAGGTCTAACTGTGATGATTGGTTTATTGGTCTACAATCCCAGCCTGGCATTTTCCGTGTAAATCATAAACAATAAACAGGATATACTCGGTGTTCATTTCTAAT |
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