| Retrocopy Name | PJA2P1 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chrX:69161500-69161774 UCSC | |
| Coordinates (T2T) | chrX:67594880-67595154 UCSC | |
| Coordinates (hg19) | chrX:68381343-68381617 UCSC | |
| Strand | - | |
| Parental Sequence | NM_014819.5 | |
| Parental seq. overlap | 239 bp | |
| Parental seq. overlap (%) | 4.9% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | PJA2P1, located on chrX:69161500-69161774, is a retrocopy of the parental gene PJA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | PJA2 |
| Full Name | praja ring finger ubiquitin ligase 2 |
| Also known as | Neurodap1|RNF131 |
| Coordinate | chr5:109334709-109409978 |
| Strand | - |
| Gene summary | Enables protein kinase A catalytic subunit binding activity; protein kinase A regulatory subunit binding activity; and ubiquitin-protein transferase activity. Involved in several processes, including protein ubiquitination; regulation of macrophage activation; and regulation of signal transduction. Located in cytoplasm; intermediate filament cytoskeleton; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022] |
| >PJA2P1 |
| TTCATGCTGGATGGAAACAACAACCTTGAAGATGACTCCAGTGTGAGCGAAGACCTAGAAGTGGATTGGAGCCTCTTTGATGGATTTGCAGATGGGTTAGGAGTGGCTGAAGCCATTTCCTATGTGGACCCTCAGTTCCTCACCTACATGGCACTTGAAGAACGCCTGGCCCAGGCAATGGAAACTGCCCTTGCGCACTTGGAGTCTCTCGCAGTGGATGTAGAGGTGGCCAATCCACCAGCAAGCAAGGAGAGCATTGACGCTCTTCCCGAGAT |
| >NM_014819.5 |
| accgccgccgccgccgccacagccgccagccgcTTCGCGTTCggcgggggaggagttggaggcggagaagaaggcggtggtggcgggtggaggTTCGAGCGCTGTTCTCGCTCCGGAGCCGCTGCACATTTCGgaatcttctgcggcttgtccatagtgtgaataaaaactaaatcacatctataattctactgaactggtcacacagacgctgccatatatgtcacagtacactgaaaaggagccagcagCAATGGACCAAGAATCTGGTAAGGCTGTCTGGCCCAAACCAGCAGGAGGGTATCAGACAATTACAGGCAGGAGATATGGAAGAAGACATGCTTATGTCAGTTTTAAACCATGTATGACCAGACATGAAAGAAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAGGAAAATTCCTCAGGTTCCAGTCCTTTGGATCAAGTTGATTCTTCTTTACCCAGTGAACCTATATTTGAAAAAAGTGAAACAGAAATTCCCACTTGTGGTTCAGCATTGAATCAAACCACTGAGAGCAGTCAATCCTTTGTTGCAGTACATCACAGTGAGGAAGGCAGGGATACCTTAGGAAGCAGTACAAATCTTCATAATCACTCTGAGGGAGAGTATATTCCAGGAGCTTGTAGTGCTTCAAGTGTCCAAAATGGAATTGCATTGGTTCATACAGACTCTTATGATCCAGATGGCAAACATGGAGAAGATAATGACCATCTTCAACTTTCTGCAGAAGTCGTGGAAGGTAGTAGATACCAGGAATCATTAGGCAATACAGTATTTGAGTTGGAAAACAGAGAGGCAGAGGCATACACTGGTCTTTCACCACCAGTTCCCTCATTTAACTGTGAAGTAAGAGATGAGTTTGAAGAGTTAGATTCTGTACCATTAGTGAAAAGTTCTGCTGGTGATACTGAGTTTGTCCATCAGAATAGCCAGGAAATTCAGAGGTCTTCTCAAGATGAAATGGTTAGTACGAAACAACAAAATAATACTAGCCAGGAAAGACAGACAGAACATTCACCTGAAGATGCAGCCTGTGGTCCAGGGCATATTTGTAGTGAACAAAATACCAATGATAGGGAAAAGAACCATGGAAGTTCTCCTGAACAGGTAGTGAGGCCAAAAGTTAGAAAACTGATAAGTTCAAGCCAGGTGGACCAAGAAACAGGTTTTAATAGGCATGAGGCGAAACAAAGAAGTGTTCAAAGATGGAGAGAGGCTTTGGAAGTTGAGGAAAGTGGCTCAGATGACCTCTTAATAAAATGTGAAGAATATGATGGAGAGCATGACTGTATGTTCTTGGATCCACCATACTCAAGAGTTATTACACAAAGGGAAACAGAAAATAACCAAATGACATCAGAAAGTGGAGCCACAGCAGGAAGGCAAGAGGTGGATAACACCTTTTGGAATGGCTGTGGAGATTATTACCAACTCTATGACAAAGATGAAGATAGTTCTGAATGCAGTGATGGGGAATGGTCTGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAATCCTCAAGTGATGAAAGCTGGGAGACTCTGCCAGGAAAAGATGAGAATGAACCTGAGCTACAAAGTGATAGCAGTGGCCCTGAAGAAGAAAACCAAGAATTATCTCTTCAGGAAGGGGAACAGACATCCTTGGAAGAGGGAGAAATTCCTTGGTTACAGTACAATGAAGTCAATGAAAGCAGCAGTGATGAGGGAAATGAACCTGCCAATGAATTTGCACAGCCAGCTTTCATGTTGGATGGTAACAATAACCTGGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGATTGGAGCCTATTTGATGGCTTTGCAGATGGACTAGGAGTTGCTGAAGCTATTTCATATGTGGATCCTCAGTTCCTTACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAGACTGCTCTGGCCCATTTAGAGTCTCTTGCAGTGGATGTTGAGGTGGCCAATCCACCAGCTAGTAAGGAAAGCATTGATGGTCTTCCAGAGACCCTTGTTCTTGAAGATCACACTGCTATTGGTCAGGAACAATGCTGTCCAATCTGTTGCAGTGAGTATATTAAGGATGATATAGCAACAGAGTTGCCCTGTCACCATTTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAAAAGTCGGGAACATGCCCTGTGTGCCGCCGTCATTTCCCACCTGCGGTTATTGAAGCATCTGCAGCTCCTTCCTCTGAGCCTGATCCTGATGCCCCACCTTCAAATGACAGTATTGCAGAAGCACCCTAAACCTTGACAGTTGAAATGAGATCAGTGTATCAAAGTAAATCTGCAAATTCCTTCTAAATTTCATGTGCAAATAATtatatataaatatatttaaaaatgctatatatagtatatGCCATAGTTTAGAAAGAATATTAACCTTTCTAAACTAAATTTAGGTTTGCAGAAAGTATTAAACATTTTTAAGCTGAATGTTGAGACAGTGCATCCATTTTCTTTAGTTGAATATGTTTGTATTAATTGTAAAGCCAAGCTTATCAGTTGACTCTCTCCAGAATAAATAATCATCTGTGTGGCATACGTTATTGGCTTTGTCTGTAATACTGCCACTAAGTGATTATAATTAAGCTGTCCTGTTTGCATCAAATGTAAAGACTGTGTTCACAACCGTAGTAAAATTTGGTTTCATTGGAAATGAAACAAATTCTAAAGTATGCTTTTTCACTAGTCCCTTTGATTTTGCTATATCATAACCTCTTGGTTCATATGCTGAGAAATTTTTCAGAAAGTCCATTTTTGTTTAAAATTAGAACTTTTCAGAATGCCAAATGAAGGCTAAAATTTTGGCCAGAACATTACAAAAGTTTTAAATCGTAGACGTAACTCCCCCTGAAATAAAGTTAGGTAGTAAAATCCTTAATGAAACCAGTGGATGTGCTTAACGTAAGGTTAGTAAAGCATACAAAGAATCTAGTGTGCTCAGGGCTTGGTACAATGAGCTGAATTAGATGGCCTTATGAAACTCTTTCTAACCTCTTACCCAACCTGTTTCTCCTTGGTTAAAATTATACTTGAAGGCCCAGAACACTCATGGCACATTTGTTTAATATTGCTTATAGTTAGTTTAAGGTAATTTTGCTTCTACAGTATTTTGGAAGGTCTGAAAACTTGCACAGGGTCATCTTTGTAATTATATAACCCCAAACTAAGATGCACAATGTCTCCTTCAGGTGATCACACACAGTGGACGAGTATGTGCAAACATGGACATAATAGTTCACTTACAAATGTGATTTGATGTTAACACTAGAGAATGATGACTGTAGAACATTTGAGCAAGTAAAATAGTAAAGCACATAGTGAGTGTATGTCCGTCTAACTGGTACATTGATAATTTAGTTTGGGCACATAAAAGGAATATTTATATGGCTTCCCAAATGCAGAGTTACATCTTATTCGTGTATTTCTCTGAGTATTTATATCCCGTCTCCTTTTTTCATTCTTAAAAATAAATGAATTTTCACTGTTGGCACATATGAGGCTTAAATATAAGGAACATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTATTTACAGCAAAATACTGTGTATCCTTTTATGGGTAAAACAAAAGTGAACATTGCATGCATGTAATGTGATGAATTTGTAATTTAGGAGTTCTTTGGGGCTTCTGTGACTTGGGAAATGCTTACATTCAGGCCTTAATGTTGCATTAGCTAGCATGTTTTCCCTCTGATGTATATAGTCACTGTTGTATAAACTAATCTTTGCTTGTTTTCTACTCTGTGATCTTTCCATATCATATTTCATTAATGATCAGTTAGTGTCAAGGAGTCAAAACAGATTAAAATTAATTTCATGTGTATATGGTGGAAATTTGTGGCTAGTGTGATTTTTGTTTGTTTCCTTTTAAGTACTGTTGATCAGTTGTGACACTTACTGGTTAAACTTACGTTGCTAAAGATTTCTCTATAATAAGCCACACATTATATTTAGACTATATTAAGGGACCTTGGTTTTCTTCTAGATAGCAGCTGTCCCAAAGAAAATATTTCTTCTTTGTCTGTTAAGATTTAGCTATTATCTGCCAGTTGTTAAGAGGTTTTGGTTCCAAACTCAACCAGCAATGTTGAGAGCTGAACTTAAGATAGCTGTTGTACTTTTTGCTTTCCATCTGTTACTGTCCTTCATTCTTGGCTCCCTACTATCTATAAACAGCTGCTGTGAAGAAGAAAAGTTGAATAAGAGTTGGCTTAAATTTTAAAAAAGAAAAAGAAAATTGAGGTTTTAGGATTTTCATGGTAACAAGCTCTGGTATAAGCTAAGGCTGGCAAGTTCAGATACTAAAATATTATTTGATCATATCTTGGATCCTTTTGAAAAAGTTAAGACTATATGAAGGTAAATTAGAAATAAGTATGAATATTAATAAAATAGCAtttatcttatttctctattttatgttgtgacttaacctaattttatttttttaacattttcttatttcttatAATATGAATGCTGATATTTAAAGGTAGATCTATGTGGTATTCTTTGTGTTTCTTAATTGTTTAACTCTTAAGATTATTTGTGATCTGGATTTATGTATTTGTTAGATACATACGAATTGTTAAAATGGAATGCAAGTTTTTCAAAAGCCCAGGTCTAAATGTAATGGTTGGTTTATTGTTCTATAACCCCAGCCCATCATTTTCTGTGTAAATCATAAACAATAAACAGAATATACTCGGTG |
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