| Retrocopy Name | Ipo5P1 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr1:247982248-247983783 UCSC | |
| Strand | - | |
| Parental Sequence | XM_224534.9 | |
| Parental seq. overlap | 1223 bp | |
| Parental seq. overlap (%) | 25.6% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Ipo5P1, located on chr1:247982248-247983783, is a retrocopy of the parental gene Ipo5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Ipo5 |
| Full Name | importin 5 |
| Also known as | Kpnb3|Ranbp5 |
| Coordinate | chr15:106243110-106293326 |
| Strand | + |
| Gene summary | Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in cellular response to amino acid stimulus; positive regulation of protein import into nucleus; and protein import into nucleus. Predicted to be active in cytoplasm and nucleus. Orthologous to human IPO5 (importin 5). [provided by Alliance of Genome Resources, Apr 2022] |
| >Ipo5P1 |
| TTGGACTGGCTGTGGGGAAGGAAAAATTTATGCAAGATGCATCGAATGTGATGCAGATACTGTTGAAGACACAATCAGACTTAAATAACATGGAAGAAGACGACCCTCAGACTTCTTACATGGTTTCAGCGTGGGCCAGAATGTGTAAGATCCTTGGAAAAGACTTTGAACAATATCTCCCGCTGGTTATTGAGCCTCTTATCAAGACTGCTTCAGCTAAGCCTGATGTCGCACTCTTAGACACACAGGATGTGGAGAACATGAGTGATGACGAGGGCTGGCAGTTTGTAAACCTCGGAGACCAGCAAAGCTTTGGCATTAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGGTTTACTATGCTAAGGAGTTAAGAGAAGGATTTGTGGAATACACAGAGCAAGTTGTGAAGATGATGGTTCCTCTGCTGAAGTTTTATTTTCATGACAATGTTCGCATGGCAGCAGCAGAAGCCATGCCCTTTCTCTTAGAATGTGCAAGAATTCGTGGCTCAGAGTATCTTTCACAGATGTGGCAGTTTATATGTGATCCCTTAATCAAGGCGATTGGAACCGAACCCGACACAGATGTGCTCTCAGAAATAATGAATTCTTTTGCCAAGTCCATTGAGGTAATGGGAGATGGTTGTCTCAACGATGAACACTTGGAAGAGCTGGGAGGAATTTTGAAGGCAAAACTTGAAGGGCACTTTAAAAACCAAGAGTTACGGCAAGTAAAAAGGCAAGAAGAAAATTATGACCAGCAGGTTGAAATGTCTCTTCAAGATGAGGATGAATGTGATGTTTACATTCTGACCAAAGTATCAGATATTTTGCACTCATTATTTAGTACTTACAAGGAAAAAATTTTGCCATGGTTTGAACAGCTACTCCCATTAATTGTAAATCTAATTTGTTCAAGTAGGCCATGGCCAGACAGACAGTGGGGACTATGCATATTTGATGACATCATAGAGCACTGCAGTCCAACCTCATTCAAATATGTCGAGTATTTTCGGTGGCCAATGCTACTCAATATGCGAGACAACAACCCTGAAGTCAGGCAAGCTGCTGCCTATGGACTGGGAGTTATGGCACAGTTTGGTGGAGATGATTATCGTTCTTTGTGTTCAGAAGCCGTCCCACTCTTGGTAAAAGTTATTAAGTGTGCAAATTCCAAAACCAAAAAAAATGTGATTGCTACAGAGAACTGCATCTCAGCAATCGGAAAGATTATGAAGTTTAAGCCCAACTGTGTAAACGTGGATGAAGTTCTCCCACACTGGCTATCATGGCTTCCGCTGCATGAAGATAAAGAAGAAGCTATTCAGACTTTGAATTTTCTCTGTGACCTAATTGAAAGTAACCACCCAGTTGTAATTGGTCCGAATAATTCCAATCTTCCCAAAATCATCAGTATAATTGCAGAAGGAAAAATTAATGAAACTATTAGCCTTGAAGATCCCTGTGCCAAACGCCTAGCTAACGTTGTCCGTCAGATACAGACTTCTGAAGAATTGTGGT |
| >XM_224534.9 |
| AACTGTGGGGTTAGTGCCATCCTATGACCGAAGCAAGCATAGGGCTGAGAACAGCCTTGACTACTGTGGTTCCGGGGAGAAACCTTGCCAGGGCCCATGTGTGAGCACAGCCACTTTTCTTGACCGGGATCTTTGCGTCACCAGCAGGGAAAGGAAATTCCTAAGCAAGGAACACCGCTCAGAAAGTGTTGTGCCATGCCTCCAAATCCCTGAGAATCAAGTCGAAAAACTGGGAGCAACAGAAAACACTGTACGCGCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCCCCGACAATGTGGTCCGGAAACAGGCGGAGGAAACCTATGAGAATATCCCAGGCCGGTCCAAGATCACATTCCTCCTACAAGCCATCAGAAACACCACAGCCGCTGAGGAGGCTAGACAAATGGCCGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCATTTGATGAAGTCTATCCAGCTCTTCCATCAGATGTCCAGACCGCCATCAAGAGTGAATTGCTGATGATCATTCAGATGGAAACACAGTCCAGCATGAGGAAGAAAATCTGTGATATTGCTGCAGAATTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAGTGGCCTGAAGGTTTGAAGTTCCTCTTTGATTCAGTCAGCTCACAAAACATGGGACTCCGGGAAGCTGCCCTTCACATATTTTGGAACTTTCCTGGCATTTTTGGGAACCAGCAACAGCACTATTTGGACGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAGGAACATCCTTCGATCCGGACACTGTCTGCCCGAGCTACAGCTGCCTTTATCCTTGCTAACGAGCACAACGTCGCTCTGTTCAAACACTTCGCAGACCTGCTGCCTGGGTTCCTACAGGCTGTCAACGACTCATGCTACCAGAATGATGATTCGGTCCTAAAATCCCTTGTTGAGATTGCAGATACGGTGCCAAAGTATTTGCGCCCTCACTTAGAAGCAACTCTACAGTTAAGTCTAAAGTTGTGTGGAGACACTAACCTCAATAACATGCAGCGCCAGCTTGCCCTGGAAGTGATCGTGACGCTGTCGGAGACCGCAGCTGCTATGCTAAGAAAGCACACCAATATTATCGCACAGACCATTCCTCAGATGTTGGCAATGATGGTTGACCTAGAAGAAGACGAGGACTGGGCAAATGCTGATGAGCTAGAAGATGATGATTTCGATAGCAATGCAGTTGCTGGTGAGAGCGCATTGGACCGAATGGCCTGTGGACTGGGTGGGAAGCTCGTCCTGCCAATGATTAAGGAACACATTATGCAAATGCTTCAAAACGCTGATTGGAAATACCGGCATGCGGGATTAATGGCCTTGTCCGCCATTGGTGAAGGATGCCACCAGCAGATGGAAGGAATTCTCAATGAGATTGTAAATTTCGTCTTGCTTTTCCTCCAGGATCCTCACCCAAGAGTCCGGTACGCAGCCTGCAATGCCGTGGGTCAGATGGCTACAGATTTCGCACCTGGTTTTCAAAAGAAATTTCATGAGAAGGTGATTGCAGCTTTGCTTCAGACCATGGAAGACCAAGGCAACCAACGGGTGCAGGCCCACGCAGCAGCTGCCCTCATTAACTTCACGGAAGACTGTCCCAAGTCACTGCTTATTCCCTACTTGGATAACTTGGTGAAGCATCTGCATTCCATTATGGTGCTCAAGCTTCAGGAGCTGATTCAGAAAGGCACCAAGTTAGTTTTGGAACAAGTTGTGACATCCATTGCATCAGTTGCAGATACTGCAGAAGAAAAGTTTGTCCCCTACTATGACTTATTCATGCCTTCACTGAAGCACATTGTTGAGAATGCAGTCCAGAAGGAGCTGAGACTGCTGAGAGGGAAGACCATCGAGTGCATCAGCCTCATTGGTCTGGCCGTCGGGAAGGAGAAGTTCATGCAGGACGCTTCGGATGTCATGCAGCTGTTGTTGAAGACGCAGACCGACTTCAATGACATGGAAGATGACGACCCTCAGATTTCTTACATGATCTCAGCGTGGGCCAGGATGTGCAAAATCCTTGGGAAAGAATTCCAGCAGTACCTTCCTGTGGTTATGGGGCCACTGATGAAGACCGCTTCAATTAAGCCTGAAGTGGCCCTTCTAGACACCCAGGACATGGAGAATATGAGTGACGACGATGGTTGGGAATTTGTAAACCTTGGAGATCAGCAGAGTTTTGGTATTAAAACTGCAGGACTGGAGGAGAAGTCAACGGCTTGCCAGATGCTGGTTTGTTATGCTAAGGAATTAAAGGAAGGTTTCGTGGAATACACTGAACAGGTTGTCAAACTGATGGTCCCACTGCTGAAATTTTATTTCCATGATGGGGTTCGAGTGGCAGCAGCAGAGTCCATGCCTCTTCTGCTGGAGTGTGCAAGAGTCCGGGGTCCCGAGTACCTTACACAGATGTGGCACTTCATGTGCGATGCTCTCATCAAGGCCATTGGCACGGAGCCTGACTCAGACGTCCTCTCGGAAATAATGCACTCCTTTGCTAAGTGCATTGAAGTGATGGGAGATGGGTGTCTCAACAATGAACACTTCGAGGAACTGGGAGGTATACTGAAGGCGAAGCTCGAGGAACATTTCAAAAATCAAGAGTTGCGGCAAGTTAAAAGACAAGATGAAGACTACGACGAACAGGTTGAAGAGTCGCTACAAGATGAAgatgataatgatgtttatatactgactaaagtctcagatattttacactcaatattcagtagctacaaagaaaaggtgttgccgtggtttgaacagctgctcccattAATTGTCAACCTGATTTGTCCACATAGACCCTGGCCAGACAGACAATGGGGATTGTGCATCTTCGATGATATCATAGAACACTGTAGTCCAGCTTCATTTAAGTATGCAGAATATTTCTTAAGGCCAATGCTCCAGTATGTATGTGACAACAGCCCGGAAGTCAGGCAAGCTGCAGCATATGGCCTTGGCGTCATGGCGCAGTACGGTGGAGATAACTACCGCCCCTTCTGTACAGAAGCACTCCCGCTGCTTGTAAGAGTCATTCAGTCTGCAGATTCTAAGACCAAAGAAAATGTCAATGCCACAGAGAACTGCATCTCAGCAGTGGGAAAGATCATGAAGTTCAAGCCTGACTGCGTGAATGTGGAGGAGGTCTTACCACACTGGCTGTCGTGGCTCCCCCTACATGAAGATAAAGAAGAAGCTGTCCAGACCTTCAGTTACCTGTGTGACCTGATTGAAAGTAATCATCCAATTGTTCTTGGCCCAAATAATACCAATCTACCGAAAATATTCAGTATAATTGCAGAAGGAGAAATGCATGAGGCCATCAAACATGAAGACCCCTGTGCCAAACGCCTGGCCAATGTAGTTCGCCAAGTACAGACTTCTGGAGGATTGTGGACTGAATGCATAGCTCAACTCAGTCCGGAGCAGCAGGCAGCCATACAGGAGCTCCTGAACTCTGCCTGAAGGGCCTTAATACCACCTGCCAGAAGACTAACTCCAAATAAACGTTTACCCttttgtttaggtttctttgttttgttttTGAGCAAGAGAGAGCAGTAGTGTTGTGTGTAGGCCATTCTTCTGGAGCCATGCGCAGGAAAAGCAGTCCTGTGTGCAGAATGGACTGCCGTGGATCTCCTCAGACCCGCAGAGGAGGTCCCTGTAAGCCCTGTGGTAGCACTGCAGAGTATTTTTCTATTGCCGTGTCTGACCCCCGTGAAGGGAAGGGGGAAACAATTCCTTTTCTCGGTAGACGCAGAAACGTAAGGAGAGCGGCTTTCAGATCAGTTCATCCACATAGATGTGTGTTACACAGACTGGGGGACAACCTAGTGTTCGTTCTGTAAATGGAGTGAGTCTAGGGGGGAGGGGTAGAAAGAAGCCTTTACCAGCCAACCAGCTGCAAACAACTGCTGACAAACCAGAAGCATGGGGCTGTCACGTGATGTCACTCTGGTTCTTTCCCAGAAGGCTTATGCAGTGACTCGGTGTGGAGGCTGTGCCACTCCCGGCCCTTGAATGTGAAGTGTCGTTGGCATGTCTGGCAGTCTCCTTCACTCCTCAATAAACAGCATTGAAACACAAAGAGGCCTGTGTAGAACTTCAGTGCTGTCTGTCCTTGATTGCTTTCATGTTTGATATAAGAGTGATCTGATATTTTTTTAAGGTGAGAGTTCTGGCTCAATGTTTCCCCTCCACACTCTCTGCAGTGCGGCCTGGGAAGTGTGTGTGCTGTCTTGGAGTTAATTTAAGCTCAGTTATAACACAGCTACTCTGTTCATAATTGGTATTCTGAAGGTTTGCAAATTCAACCAGCTTTTCCAAAGCTCGGATTGTTCTGTTGAGCAAAAAGTTTTGGCTTAGGATTTTCATTGCAGACTGTAATTGCTCAGAGCCACACGCAGCTTTCGAAGTTTTTAATTTTACAAGTATTATGGCTAAACTTATTTACTGAAAATTTCAGTAAAGTGTGTGAAATTTTCTTTATGTATTAACATCAGAGCAGTAACTGACTAGCTGTTGTTTCCTTTAAGTAATTTTCTAAGGGATCTTAACCGATTTTCTGTTGAAACCTCGGTGTTAACGTTTTCATAGTTTGTACTAAATTTAACTGTGATACAAAATGAGTTTTATGCATAAATCAGAATTTAAAATTAAATATTTCTTTCTTTAAA |
| PMID - Link | Title |
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