Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IPO5P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_12) and its respective parental gene (in scaffold_m20_p_3). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_12:36051896-36054518  UCSC
Strand -
Parental Sequence IPO5_x1
Parental seq. overlap 2151 bp
Parental seq. overlap (%) 61.4%
Genomic Region Intergenic
Retrocopy Summary IPO5P1, located on scaffold_m20_p_12:36051896-36054518, is a retrocopy of the parental gene IPO5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IPO5
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_3:150190065-150248654
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RANBP6
Chimpanzee Pan troglodytes IPO5P1
Bonobo Pan paniscus IPO5P1
Gorilla Gorilla gorilla IPO5P1
Orangutan Pongo abelii IPO5P1
Gibbon Nomascus leucogenys IPO5P1
Green monkey Chlorocebus sabaeus IPO5P1
Crab-eating macaque Macaca fascicularis IPO5P1
Rhesus Macaca mulatta IPO5P1
Baboon Papio anubis IPO5P1
Golden snub-nosed monkey Rhinopithecus roxellana IPO5P1
Marmoset Callithrix jacchus IPO5P1
Mouse lemur Microcebus murinus IPO5P1
Mouse Mus musculus Ipo5P1
Rat Rattus norvegicus Ipo5P1
Chinese hamster Cricetulus griseus Ipo5_1P1
Rabbit Oryctolagus cuniculus IPO5P1
Pig Sus scrofa IPO5P1
Cow Bos taurus IPO5P1
Sheep Ovis aries IPO5P1
Dolphin Tursiops truncatus IPO5P1
Horse Equus caballus IPO5P1
Dog Canis familiaris IPO5P1
Panda Ailuropoda melanoleuca IPO5P1
Cat Felis catus IPO5P1
Pale spear-nosed bat Phyllostomus discolor IPO5P1
Velvety free-tailed bat Molossus molossus IPO5P1
Greater mouse-eared bat Myotis myotis IPO5P1
Greater horseshoe bat Rhinolophus ferrumequinum IPO5P1
Egyptian rousette Rousettus aegyptiacus IPO5P1
Sloth Choloepus didactylus IPO5P2
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IPO5P1
CTTGCCAATGAGAATAACATCGCTCTTTTCAAAGACTTTGCGGACCTGCTTCCCGGGATCTTACAGGCCGTGAACGACTCTTGCTACCAGGATGACGATTCCGTGCTAGAATCCCTGGTTGAGATTGCAGATACTGTCCCTAAATACTTGGGTCCTTACTTAGAAGATACCCTGCAGCTGAGCCTAAAGTTGTGCGGAGACTCTAGACTTAGTAACCTGCAACGCCAGCTGGCCCTTGAAGTAATAGTGACCTTGTCCGAAACCGCAACCCCCATGTTGAAAAAATACACAAATATTATTGCACAGGCAATTCCTCATATATTGGGAATGATGGTTGATCTACAAGATGATGAGGACTGGGTTAATGCCGATGAAATGGAAGAAGACGATTTTGACAGCAATGCCGTTGCTGCTGAGAGTGCACTAGACAGACTGGCCTGTGGGCTCGGGGGAAAACTTGTTTTACCAATCACGAAGGAGCATATCATGCAGATGCTTCAGAGCCCTGACTGGAAATATCGACATGCCGGATTAATGGCGTTATCTGCCATTGGAGAAGGATGCCATCAGCAAATGGAACCAATTCTAGATGAAATGGTTAACTCTGTTTTGCTTTTTCTTCAGGATCCTCACCCAAGGGTAAGGGCTGCAGCCTGTATTACGCTTGGACAGATGGCTACAGATTTTGCACCTAATTTCCAAAAGAGATTCCATGAAACAGTGATTGCAGCTCTGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCACATGCAGCTTCTGCGCTTGTTATTTTTATTGAAGACTGCCCCAAATCATTGCTAGTTATATATTTGGATAGTATGGTGAGAAACCTACATTCCATCTTGGTGATTAAACTTCAAGAGTTGATTCGGAATGGAACTAAGTTGGCTTTAGAACAGCTTGTGACAACTATTGCCTCAGTTGCAGATACAATAGAAGAAAAGTTTGTTCCATATTATGATATATTTATGCCATCACTAAAGCAAATTGTTGAGCTTGCTGTTCAAAAGGAACTCAAGCTTCTGAAAGGAAAAACTATTGAATGCATTAGCCATGTTGGTCTTGCTGTTGGGAAGGAAAAATTTATGCAAGATGCATCAAATGTGATGCAGCTATTATTGAAGACACAATCAGATTTAAATAATATGGAAGATGATGACCCTCAGACCTCTTATATGGTTTCAGCATGGGCTAGAATGTGTAAAATTCTTGGAAGTGACTTTCAACAGTACCTTCCACTGGTTATTGAGCCTCTTATTAAGACTGCTTCAGCTAAACCTGATGTTGCTCTCTTAGACACACAAGATGTGGAGAATATGAGTGATGATGATGGCTGGCAATTTGTAAATCTTGGTGATCAGCAGAGTTTTGGAATTAAAACCTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGGTTTACTATGCTAAGGAATTAAGGGAAGGACTTGTGGAATATACAGAACAAATTGTAAAGCTGATGGTTCCTTTACTGAAATTTTATTTCCATGACAATGTTCGAGTGGCAGCAGCTGAGTCCATGCCATTTCTCCTGGAATGTGCAAGAATTCGTGGCCCAGAGTATCTTGCACAGATGTGGCAATTCATATGTGATCCCTTAATCAAGGCTATTGGGACTGAACCTGATACAGATGTACTCTCAGAAATAATGAGTTCTTTTGCAAAGTCCATTGAAGTAATGGGAGATGGCTGCCTTAATGATGAACACTTAGAAGAACTGGGAGAAATACTGAAAGCAAAACTTGAAGGGCACTTTAAAAACCAAGAATTGAGACAGGTTAAGAGACAGGAAGAAAACTATGACCAACAGGTTGAAATGTCCTTGCAAGATGAGGATGAATGTGATGTTTACATTTTGACCAAAGTATCAGATATTTTGCACTCATTATTTAGTACTTACAAAGAAAAGATTTTACCATGGTTTGAACAGCTGCTTCCATTAATTGTAAATCTAATTTGTTCTAATAGGCCATGGCCAGATAGACAGTGGGGATTATGTATATTTGATGATATTATAGAGCACTGTAGTCCAACCTCATTTAAATATGTAGAATATTTTCGGTGGCCCATGCTACTAAATATGCGAGATAATAACCCTGAAGTCAGGCAAGCTGCTGCTTATGGTCTGGGTGTTATGGCACAGTTTGGTGGAGATGATTATCATTCTTTATGTTCAGAAGCTGTTCCACTGCTGGTAAAAATTATTAAGTGTGCAAATTCTAAAACCAAAAAAAATGTCATTGCTACAGAGAACTGTATCTCAGCAGTGGGCAAGATTTTGAGGTATAAGCCTAACTGTGTAAATGTCGATGAAGTTCTTCCCCACTGGTTGTCATGGCTCCCACTGCATGAGGATAAAGAGGAAGCTATTCAGACTTTGAGTTTCCTCTGTGACTTAATTGAAAGTAACCACCCAGCTGTACTCGGTCCAAATAATTCCAATCTTCCCAAAATAGTCAGTATAATTGCAGAAGGAAAAATTAATGAGACTATTAACTATGAAGATCCGTGTGCCAAACGCCTGGCTAATGTTGTGCGTGAGGTACAGACTTCTGAAGAATTGTGGT
>IPO5_x1
AGCTAGTCCCGCGCGCACAGCTGGTGccggtcccggcgctgggcccgccccccgcccctcccgccggcccGCCAGCGCGCCTCACGGCTCCTGTCTCCCCTCCCTCCTtctctctctctctctctctctctctgtctcACGCCTAGCGCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCCCCGACAATGTGGTCCGGAAACAGGCAGAGGAAACCTATGAGAATATCCCAGGCCAGTCAAAGATCACATTCCTCTTACAGGCCATCAGAAATACTACAGCTGCTGAGGAGGCTAGACAAATGGCTGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCATTTGATGAAGTTTACCCAACTCTTCCTTCTGATGTCCAGACTGCCATCAAGAGTGAACTACTAATGATTATTCAAATGGAAACACAGTCTAGCATGAGAAAGAAAATTTGTGATATTGCTGCAGAGTTGGCCAGAAATTTAATAGATGAGGATGGTAACAACCAATGGCCTGAAGGTTTGAAGTTCCTTTTTGACTCAGTCAGCTCTCAAAATATGGGACTGCGGGAAGCTGCCCTTCACATTTTCTGGAACTTTCCTGGAATTTTTGGGAACCAACAGCAGCACTATTTAGACGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAGGAACATCCAGCGATCCGAACACTATCTGCTAGAGCTACGGCTGCATTTATACTTGCAAATGAGCATAATGTTGCTCTGTTCAAACATTTTGCAGACTTGTTACCCGGATTCTTACAGGCTGTAAATGATTCGTGCTATCAGAATGATGATTCGGTCCTAAAATCCCTTGTGGAGATTGCAGATACTGTTCCAAAGTATTTACGTCCTCATTTGGAAGCTACTTTACAGCTAAGTCTAAAGTTGTGTGGAGACACTAGCCTCAATAATATGCAACGCCAGCTTGCCCTTGAAGTAATTGTGACCCTCTCTGAGACTGCGGCTGCTATGTTAAGAAAACATACCAATATTGTTGCACAAACTATTCCTCAGATGTTAGCAATGATGGTTGATCTAGAAGAGGATGAGGACTGGGCAAATGCGGATGAACTAGAAGATGATGATTTTGACAGCAATGCAGTTGCTGGTGAGAGTGCTTTGGACCGAATGGCTTGTGGACTTGGTGGAAAGCTTGTTTTGCCCATGATCAAGGAACACATTATGCAGATGCTTCAAAATCCTGACTGGAAATATCGACATGCAGGATTAATGGCTTTATCTGCCATTGGGGAAGGATGCCACCAGCAAATGGAAGGAATTCTAAATGAGATAGTAAATTTTGTTTTGCTTTTTCTTCAGGATCCTCATCCAAGAGTGAGGTATGCAGCCTGTAATGCAGTTGGACAGATGGCTACAGATTTTGCACCTGGTTTCCAAAAGAAATTTCATGAGAAGGTGATTGCAGCTCTTCTGCAGACCATGGAAGACCAAGGCAATCAGCGAGTGCAGGCCCATGCCGCTGCCGCTCTCATTAACTTTACGGAGGACTGTCCCAAGTCACTGCTTATTCCATATTTGGATAACTTGGTGAAACATCTACATTCCATCATGGTACTTAAACTTCAGGAGTTGATTCAGAAAGGCACCAAGCTAGTTTTGGAACAAGTTGTGACATCTATCGCATCAGTTGCAGATACTGCAGAGGAAAAGTTTGTCCCCTACTATGACTTATTTATGCCATCACTAAAGCACATTGTTGAGAATGCAGTTCAAAAGGAACTTAGACTTCTCAGAGGAAAAACTATTGAATGCATCAGTCTCATTGGTCTGGCTGTTGGGAAGGAAAAATTCATGCAAGATGCATCGGATGTGATGCAGCTATTGTTGAAGACCCAGACAGACTTCAGTGATATGGAAGATGATGATCCTCAGATCTCTTACATGATCTCAGCATGGGCCAGAATGTGCAAAATCCTTGGAAAAGAATTTCAGCAATATCTTCCAGTGGTCATGGGGCCTTTAATGAAAACAGCTTCAATTAAGCCTGAAGTAGCCCTTTTAGATACCCAAGACATGGAGAATATGAGTGATGATGATGGTTGGGAGTTTGTGAACCTTGGAGACCAGCAAAGTTTTGGTATTAAAACTGCAGGATTGGAAGAAAAATCAACTGCTTGTCAAATGCTGGTTTGCTATGCTAAGGAGTTAAAGGAAGGCTTTGTGGAATATACCGAACAGGTTGTCAAACTGATGGTTCCTTTACTGAAATTTTATTTCCATGATGGTGTTCGAGTGGCAGCAGCAGAATCCATGCCTCTGCTCCTGGAATGTGCAAGAGTTCGAGGTCCTGAGTATCTCACACAGATGTGGCATTTTATGTGTGATGCTCTAATCAAGGCTATTGGTACAGAACCAGATTCAGATGTCCTCTCGGAAATAATGCATTCTTTTGCAAAGTGCATTGAAGTAATGGGAGATGGATGCCTTAATAATGAACACTTCGAAGAATTGGGAGGTATACTGAAAGCTAAACTCGAAGAACATTTTAAAAATCAAGAATTGCGGCAAGTTAAAAGACAAGATGAAGACTATGATGAGCAAGTGGAAGAGTCACTACAAGATGAGGATGATAATGATGTTTATATTCTGACCAAAGTGTCAGACATTTTACACTCAATATTCAGTAGCTACAAGGAAAAAGTGTTACCATGGTTTGAACAGCTGCTTCCATTAATTGTCAACCTAATTTGTCCACATAGACCATGGCCAGACAGACAATGGGGATTATGCATCTTTGATGATGTTATAGAACACTGTAGTCCTGCCTCATTTAAATATGCAGAATATTTCTTAAGGCCAATGCTCCAATATGTATGTGACAGCAGCCCAGAAGTCAGGCAAGCAGCTGCGTATGGCCTGGGAGTCATGGCACAGTATGGTGGAGATAACTATCGTCCTTTTTGTACAGAAGCACTTCCACTGCTGGTAAGAGTTATTCAGTCTGTTGATTCCAAGACCAAAGAAAATGTCAATGCTACAGAGAACTGCATTTCAGCAGTAGGGAAAATTATGAAGTTCAAACCTGACTGTGTGAACGTTGAAGAAGTCCTGCCGCACTGGTTGTCTTGGCTTCCACTACATGAAGATAAAGAAGAAGCTGTTCAGACTTTCAGTTATCTGTGCGATCTGATTGAAAGTAATCATCCCATTGTTCTTGGCCCAAACAATACCAATCTGCCCAAAATATTCAGTATAATTGCAGAAGGAGAAATGCATGAGGCAATTAAACATGAAGATCCTTGTGCCAAACGTCTGGCTAATGTAGTTCGCCAAGTACAGACTTCTGGAGGATTGTGGACTGAATGCATATCACACCTCAGTCCTGAGCATCAGGCGGCCATACAGGAGCTCCTGAATTCTGCTTGAAGGACCTTAAGATCACCACCAGAAAACTGACTCCGAATAAACGTTTACCCttttgttt

Publications

PMID - Link Title
No publications available for this retrocopy