| Retrocopy Name | CHMP1 |
|
| Species | Phyllostomus discolor | |
| Coordinates | scaffold_m19_p_16:9296063-9296570 UCSC | |
| Strand | - | |
| Parental Sequence | CHM_x1 | |
| Parental seq. overlap | 412 bp | |
| Parental seq. overlap (%) | 7.7% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | CHMP1, located on scaffold_m19_p_16:9296063-9296570, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHM |
| Full Name | N/A |
| Also known as | NULL |
| Coordinate | scaffold_m19_p_9:3338631-3481204 |
| Strand | + |
| Gene summary | N/A |
| >CHMP1 |
| AAACTTCCTTCAGTGTCTTGGACGGTTTGGCAACACTCCGTTTTTGTTTCCCTTGTACGGCCAAGGAGAAATTTCCCAGTGTTTCTGCAGAATGTGTGCGGTTTTCGGTGGAATCTACTGTCTTTGCCATCAAGTGCAGTGCCTTGTGGTGGACAAAGAATCCGGAAGGTGCAAAGCAATTATCGATCACTTTGGCCAAAGAATAAGTGCTGAGCATTTCGTTGTGGAGGATAGCTCCCTTTCTGAGGACACATGCGCGAATGTGCAGTATAAGCAGATCTCCAGGGCAGTGCTCATTACGGATCGATCTGTACTGAAGACAGATTCAGATCAGCAGATTTCCGTCTTGATGGTGCCTCCAGCGGAACCAGGGATGAGTGCCGTTCGGGTCACTGAATTGTGTTCTTCAACTATGACGTGCATGAAAGGCACCTATCTGGTGCATCTGACCTGTTCCTCTTCTAAAATGGCAAGAGAAGACTTGGAACCAGTGGTGGAGAAGTTGTTC |
| >CHM_x1 |
| atttcctctaacctcaacatcccagttctgtgtgcttttgagctttgaggcagcgatattgaaaatggaatgagttgaaggggcaaGGGTGGTTTGTTGATAAAGATTGGTGGTGGCTAGAGTTTTATACCCTTTTCTTTACTCTTATTTTTTTTTTATTGTTACAGAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTCAGCTTTTCAGGATTGTTGTCCTGGATAAAGGAATACCAGGAAAAGAGTGACATTATGAATGAAAGCCCCGCATGGCAAGAACAGATCCTTGAAAATGAAGAAGCTGTTGTTCTTAGCAAGGTGGACAGAACCATTCAACATGTGGAAGTGTTTTGTTATGCCAGTCAGGATTTGCACGAAGGTGTCGAGGAGGCTGGCGCACTGCAGAAAAACCACGCCTCGGTGGCATCTGCGGGCTCCACGACAGCCGCAGATTTGGCCTGCCCGCCCCCAGCAGGCGAGTCATTAAGCACCGCGAGCAGTGAGTGGCCCGAAGACCAGACTCCCAGCGCGGATCCGGAGCCGGCCCTGGAAGCACACGATGCTGTAGTGGCCGGGGAGAGCGCGAACCATTGTGATGACAACGCTTGTGTGCTGTCAGCTCCGGAGGAAACCGGTGACCCTGTGCCTGCAGCGGAAGACATCACAGAGCAACCAAAGAAAAACAGGATTATGTACTCGCAAATTGTTAAAGAAGGCAGGAGGTTTAACATCGATTTGGTATCAAAGCTGCTGTATTCTCGAGGATTGCTAATTGATCTTCTAATCAAATCGAATGTCAGTCGCTATGCAGAGTTCAAGAATATTACCAGGATTCTTGCATTTCGAGAAGGAAGAGTGGAACAGGTTCCTTGTTCAAGAGCAGATGTCTTCAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTTACATTTTGTATGGAGTATGAAGACCATCCTGATGAATATAAAGCGTATGAGGAGATGACATTCTCTGAATATTTAAAAACCCAAAAATTAACTCCCAACCTGCAATATTTCGTTCTGCATTCCATTGCGATGACGTCAGAGACAGCCAGCAGTACCATAGATGGTCTCACAGCTACCAGAAACTTTCTGCACTGTCTTGGGCGGTACGGCAACACCCCGTTTTTGTTCCCTCTGTATGGCCAAGGGGAGCTCCCTCAGTGTTTCTGCAGGATGTGTGCTGTATTTGGTGGAATCTATTGTCTTCGCCATTCAGTGCAGTGCCTTGTTGTGGACAAAGAATCCAGAAAATGCAAAGCCATCATAGATCAGTTTGGTCAGAGAATAATCTCTAAGCATTTTCTTGTGGAGGACAGTTACTTTTCTGAGAACACGTGTTCACGCGTGCAATACAGGCAGATTTCCAGGGCGGTCCTGATTACGGACAGATCTGTCCTGCAGGCAGATTCAGATCAACAGATTTCCATCCTGACAGTGCCACCGGAGGAAGCAGGAACTCCCGCCGTCCGGGTCATTGAGTTATGTTCTTCAACGATGACATGCATGAAAGGCACATATCTGGTTCATTTGACTTGTCCATCTTCTAAAACAGCAAGAGAAGATTTAGAACCAGTTGTGCAGAAATTGTTTACTCCAGATACGGAAACGGACATAGAAAATGAAGTTGAAAAGCCAAGACTTCTGTGGGCTCTTTACTTCAATATGAGAGATTCTTCGGATGTCAGCAGGGACTCTTACAATGATTTGCCATCCAACGTGTATGTCTGCTCTGGCCCGGACTGTGGTTTGGGAAATGACAATGCAGTCAAACAGGCTCAGGCCCTGTTTCAGCAGATCTGCCCCACTGAAGACTTCTGTCCACCCCCTCCAAATCCTGAAGACATTATTCTGGATGGGGACAGTTTACAGCCAGGGCCTTCGGAATCTGCTGTCATACCTGAGGCCAGTCCAGAGACTCCCAAGGAAACTGCAGAGCTGGGGAAGCCGGAAGAGCTCTCCGAATAGCAGATGCACATTGCAACAAACCGTATATCCCAGAGTCTTCTCGATCTACAAACTGTCTGGAAAATCTTAGAAAGCAGCGGTGGCTAGTCGTGCAGAACTACCCAGAGAACCAGGTCATACAAATCCAAAAGGGGATTTTCCTGAAAGAGGACACTTCGAGAACACACAATACTTGCAAAGCACATTGACTCGCCTGTTGTAAGGTACCAAACCTGTGGAGTTACCAAAATAGGAATTACAAATGGATTGCTTCCCAGGAATATAGCTTTGGAGACTGCAATGATCCTATGCATTGTTCATAACTCTGTGCTCTCAGGCCAGCTTTCGCTTTGCCGCTTTGGATCTTTGTTTGAAAGCCGCATCTTCGGAATCAGCCCACTTATTTCCTCTCATTATTTTTCTTTAAGGGTGTGAGCATCATGATAGAAGCGATAAAGGCCTATGTCAATATAATTGAGAAAAACTAAAGTGCTGTTCttttccgtgtataatgcagttttttgcccaaagtgttgacgggaaaataagggtgcgcgttatacatgagcagtacctgaaataccttgtatctgttcttgtgttttgccattatgttacatgaaatctatagtaccataaatgctaaccttcctttataatataaaaaagtatctaaatataaataaagaaaaaatagaattaaaaattaaaatgaaagttgttttttcctgaaagtttgggccaaaaacatgagtgcgcattatacacggcaaaatatggTATTGTGATCCGGCGGGGACCTGTATTTGGAATAGAGGTTTGGTTTTCTTGAGAAGTATTAAAATGCTAATATTAAAGTAGATGTTTTTAACAAAGAAATCATGAAGCCATTACTTAGTGTTTTTTAATGGTAGCACTAATTTTTATATGTGAATCCTTTCCACACTGAGAAAGCTCAGCACCGAAGAAATGGAAGGAAAGACTTGGATAGGCCAGTTGGGTTTTGGCAATTCTGTAAGAAACTATCCTAATTGTCTATGGACCCCATTTCGTCTGAGCCATGCTACTGATGATGTTAGGCAAATCCTTTAACTTTTGGGCCTTGGTGTCTCCATATGGAAAGTAGAAATAGTAATTAATACTCTACCTATCTCATAAGAATGATTTTAAATATAAATGCAGTACCATCTTCAGAATGGTTTTTCGGGGGGAAAAAAGTTGTTTCTAAATGTTCCCATCAACTTGAAGGTGACTCTCAAAAATCTTAGGCAGCAAACAATTATTGACAGCAAATAATTGTTGTCAACTTCTACAGCACCATAGATCACGATGTTTTTATTGCACCAAGACACTTATAGTCTTATAGACCAGTAAATATAGTAACATGTGAAATTCTGCTTTTGAACCTTAATAAGGAACACACTTCATAAGGATAATTTTTTATATTTCTCTTCCAGTAGGTAAACTGGAAACCACCCAGGACTCTGAATAGAGTGGAACAATTGGTAAATTCTAGAATGCCCTTAACATAAAATGTCAGGGCGGTGGTACCCAGGAAGCAAACGTAGCGATTGCTACGATTTTTTCCAAATGCCATTGATTTTTTTCCAAATGCCAAGCCCCGATGGCTTACTTTTTTGAGCAATAGTTTGGATCGAACAACTTATTTCAATATATAAAAACATAAAAAGTTTCTCGGTGTGCAGTCTGCCCAGTAGTGCCGAGCACAGAGCCGTGACTGCGGTGCACAGTCCACAGGTCTCGCAGCCTTCAGCTGCAGGAGCTCTGACGTCTCCCGATTTCCAGGAACATCTCAAGGAAAGTCAGCTCCGCCAGGCCCCAGACTCACACTAAATGGAAAGAGCCAAGGAATGTATGTCTGGCTTCACCTACAGATAGAGGTGAATCCAGGTGCCAGGAGGACCTTTCCTGCCCCTCAGGCTACTCCTCCTAATTCTTCCACCCTCTATGCAGCCCCTCCCCTCTCTCTTCAGTTCCGTCTTCCTCTCTTCCGTTTTTTGCAATACTATTCAAATCAGGGACAGAAGAATCACACGATAATCGACTTCGCTCTATGGCTTCGGATCTTTCTGAAGTCCAATCCTGTTTTTCCTGAATCCCAAGTACAGCATGTGCTAAATGCTCAGTACTACCTATTAGCCCCCAGGCATTGGCCCTGCCCCTCAGTACCAGCAATATATAGGTTTCCAGTGTATGAAAGTGTCgagttggaatacaatggcactaagctgcactaatgaagatactgtactttgcgctagtgttagagttaaggtctcttgaatagagcatacacatttatataaaCAGCCAAGCACAGTAGGCCAAGGATGGTATGTGGTTTCATCCATTATGCAACATCAGGATCTCTCTTCCAGGTTATTAGTTCCTGTTGAAATGTTTTAAAATCTCCGAAATATGATTAGTGGTGATTAAGATATTACCCGACTGTTAAAAACATTGTGTTAGAGAAAGTTAGGTATTTCCTGTTGCCTCAAGATATAAGTTATTTTTAGAGCGTTCTTTTCAGTTATCTTAATGACTGCAAATAAATATTTGTTCCTTGTTTAACTCAAAAAAAAAATACTTTTCCTTTTGTTGTAAAACCGTAAGCCTGAAGTCACATGAATAAAATTCATATGTTGTACATGGTGCGTAAATTTCAGTAACTAATACAATGTTTTAAAAATTGCTATTATCAAAGGATTCTGATTTCATGTGTTTCAAGTGTTTCATCATGCATGCTTCTCATTAATCAAAATTGATAATACCATTCAGTTTAGTGATCAATATGAAACCAATTACTAATCCTGTTGCTGCTGTATTTTTGTCATGTTGGTATGTATGCCTGCCCAGAAAAACAAATATATAAACGTATATAATAAACGTATATATTTTTCTATAGGAAAACTGACTTTTGGTCTTCCCCGTCTCCTGTGGTATTTAGTTCCTGTAGTAAAATCACAGGGTTAATGATTAACTTTAGAATGGAAGCCCTTTGTCTAAAATAATGGTTGTGCTAATCATTAACTTCGACCACAGCCATAGTTCCTTAGAAGGCAGCCCTTTTCCTCAAGACCCACAGACCTCAAAATATTTTGTTGAAATTGGATTGCTGAATACTAGTGATCCTTGAAAGCAGGAATGAAATCATTTTCTTCCAAACAAGTTATTTACCGCTATTGGTATTCAACCATTCATCTCTCTACTCTTGGTTAGTTGTCTTATATGCATTTGAAAAAGCATGAATATATGATTATTCATAACTTGCATACTGTAACAGTAAGTTTGTAAAGGAAATAAAAGTGTTTTCAATGCC 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| PMID - Link | Title |
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