| Retrocopy Name | CHMP1 |
|
| Species | Rhinolophus ferrumequinum | |
| Coordinates | scaffold_m29_p_27:8976457-8977412 UCSC | |
| Strand | - | |
| Parental Sequence | CHM_x1 | |
| Parental seq. overlap | 802 bp | |
| Parental seq. overlap (%) | 40.8% | |
| Genomic Region |
Intragenic (OPN3) |
|
| Retrocopy Summary | CHMP1, located on scaffold_m29_p_27:8976457-8977412, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHM |
| Full Name | N/A |
| Also known as | NULL |
| Coordinate | scaffold_m29_p_1:69501425-69681047 |
| Strand | + |
| Gene summary | N/A |
| >CHMP1 |
| AAATAGGATTACTTACTCTCAAATAGTTAAAGAAGGCAGAAAGTTTAATATTGACTTAGTATCAAAGCTGCTATATTCTCAAGGACTGCTAATTGATCTTTTAATCAAATCAAATGTTAGTCGTTATGCTGAATTTAAAAATGTCACTAGGATTCTTACATTTCGAGAAGGAAAAGTAGAACAGGTGCCTTGTTCCAGAGCAGATGTATTTAATAGCAAAGAACTCACTATGGTTGAAAAGAGGATGCTAATGAAGTTTCTTACATTTTGTTTAGACTATGAACAACATCCCGATGAATACCAAGATTTCATACAGTGTTCATTTTCAGAGTACTTAAAAACTAAAAAATTAACCCCCAACCTTCAGCATTTTGTACTACACTCAATTGCAATGACAGAGTCATCCTGTACTACAATAGATGGCCTTAGAGCAACAAAAAACTTTCTTCAGTGTCTTGGACGGTTCGGCAACACTCCGTTTTTATTTCCCTTGTATGGCCAAGGGGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTTGGTGGAATCTATTGTCTTCGCCATAAAGTACAATGCCTTGTAGTTGACAAAGAATCTGGCAGATGCAAAGCAATTATAGATCACGTTGGTCAAAGAATAAATGCTAAGTATTTTATTGTGGAGGATAGTTACCTTTCTGAGGAAACATGCTCAAATGTGCAGTACAGGCAGATCTCCAGGGCAGTGCTCATTACAGATCAGTCTGTACTAAAGACAGATTCAGATCAGCAGATTTCCATTTTGATAGTGCCTCCAGTAGAACCCGGCATGTGTGCTGTTCGGGTCACTGAATTATGTTCTTCAACCATGACATGTATGAAAGACACCTATCTGATACATCTGACCTGTTCGTCTTCTAAAACAGCAAGAGAAGACTTAGAATCAGTGGTAAACAAATTGTTCACCCCATATG |
| >CHM_x1 |
| ATGGCGGATAATCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGgtttgcctgaatccatcattgcagCTGCATGTTCAAGAAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAGGACTGTTGTCCTGGCTAAGGGAATACCAGGAAAACCGTGACATTGTGAATGAAAACCCAGCATGGGAAGAACAGATCCTTGAAAATGAAGAAGCCATTGCTCTTGGCAGGAACGACAAAACCATTCAACATGTAGAAGTGTTTTGTTATGCCAGTCAGGATTTGCATGATGGTGTCGAAGAGGCTGGTGCACTGCAGAAAAATCACGCTTCTGTGACATCTGCGAACTCCACAGAAGCTGGGGATTCTGCCTGCCTGCCTACAGAAGATGAGTCATTAAGCACCATGAGCTGTGAAATGCCCACAGGACAAACTCCAAGCAGTGATCCAGAGCATGCCCTAGAAGTAAATGATGTTGACACGACAGGGGAGAAAGAAAACCATTGTGATGATAAAACTTGTGTGGCATCAACTTCAGAAGAGGAAACAAATGAAAATGTGCCTACGGTAGAAGACATCGCAGAACAGCCAAAGCAAAATAGAATTACTTACTCGCAGATTATTAAAGAAGGCAGGAGATTTAATATCGATTTGGTATCAAAGGTGCTGTATTCTCGAGGATTGCTAATTGATCTTCTAATCAAATCTAATGTTAGTCGATATGCAGAGTTCAAAAATATTACCAGAATTCTTGCATTTCGAGAAGGAAGAGTGGAACAGGTTCCTTGTTCCAGAGCAGATGTCTTTAATAGCAAACAACTTTCTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTTACATTTTGTATGGAGTATGAGGAACACCTTGATGAATATAAAGACTATGAGAAGATTACATTTTCTGAATATTTAAAAACTCAAAAATTAACTCCCAACCTCCAATATTTTGTCCTGCATTCAATTGCAATGACATCAGAGACAGCCAGCAGCACCATAGATGGTCTCAAAGCTACCAAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCATTTTTGTTTCCTTTATATGGACAAGGAGAACTCCCTCAGTGTTTCTGCAGGATGTGTGCTGTGTTTGGTGGAATATATTGTCTTCGCCATTCAGTACAGTGCCTTGTTGTGGACAAAGAATCCGGAAGATGCAAAGCAATCATAGATCAGTTTGGTCAGAGAATAATGTCTAAGCATTTCCTTGTGGAGGACAGTTACTTTTCTGAGAACACATGCTCGCACGTGCAATACAGGCAGATCTCCAGGGCAGTCCTGATTACAGATAGATCTGTACTACAAACAGATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGCAGAGGAATCAGGAACTTCTGCTGTTCGGGTCATTGAATTGTGTTCTTCAACAATGACATGCATGAAAGGCACATATTTGGTCCATCTGACATGTACATCTTCTAAATCAGCAAGAGAAGATTTAGAACCAGTTGTGCAGAAATTGTTTACTCCATATACCGAACTGGAGATTGAAAATGAAGAAGTTGAAAAGCCAAGACTTCTGTGGGCTCTTTACTTCAATATGAGAGATTCTTCAGATGTCAGCAGGAGCTCTTATAATGATTTACCATCCAACGTTTACGTCTGCTCTGGCCCAGACTGTGGCTTAGGAAATGATAATGCAGTCAAACAGGCTGAGACACTTTTCCAGCAAATCTGCCCCAACGAAGAATTCTGCCCACCCCCACCAAATCCTGAAGACATCATCCTGGATGGAGACAGTTTACAACCAGGGGCTTCAGACTCCAGTGCTGTACTAGAGGCCAACTCAGAGACTCCCAAGGAAACTGCAAGCCTGGGAAATCCAGAGGAGCCCTCTGAATAA |
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