| Retrocopy Name | CHMP1 |
|
| Species | Equus caballus | |
| Coordinates | chr30:3345386-3346609 UCSC | |
| Strand | + | |
| Parental Sequence | XM_001500825.6 | |
| Parental seq. overlap | 1010 bp | |
| Parental seq. overlap (%) | 19.5% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | CHMP1, located on chr30:3345386-3346609, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHM |
| Full Name | CHM Rab escort protein |
| Also known as | - |
| Coordinate | chrX:68918061-69075008 |
| Strand | - |
| Gene summary | N/A |
| >CHMP1 |
| TCAACCAAAGAGAAATAGGATTACTTACTCTCAAATAGTTAAAGAAGGCAGGAGGTTTAATATTGATTTGGTATCAAAGCTACTATATTCTCAAGGATTGCTAATTGACCTTTTAATCAAATCAAATGTTAGTCGTTATGCAGAATTTAAAAATGTCACTAGGATTCTTGCATTTCGGGAAGGAAAAGTAGAACAGGTGCCTTGTTCCAGAGCAGATGTCTTTAACAGCAAAGCACTCACCATGGTTGAAAAGAGGATGCTAATGAAATTTCTTACATTTTGTTTAGACTATGAACAACATCCTGAGGAATACCAAGCTTTCATGCAATGCTCTTTTTCAGAGTACTTAAAAACTAAAAAATTAACCCCCAACCTCCAACATTTTGTACTGCACTCAATTGCAATGACAGAGTCGTCTTGCACTACAATAGATGGCCTTAAAGCAACAAAAAACTTCCTTCAGTGTCTTGGCCGATTTGGCAACACCCCCTTTTTATTCCCCTTGTATGGCCAAGGAGAAGTTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTTGGTGGAATCTATTGTCTTCGCCATAAAATACAATGCCTTGTAGTTGACAAAGAATCCGGAAGATGTCAAGCAATCATAGATCACTTTGGCCAAAGAATAAATGCTAAATATTTTATTGTGGAGGACAGTTACCTTTCTGAGGACACGTGCTCAAATGTGCAGTATAAACAGATCTCCAGGGCAGTGCTCATTACGGATCAGTCTGTACTAAAGACAGATTCAGATCAGCAGATTTCCATTTTGATAGTGCCTCCGGCGGAACCAGGAATGTGTGCTGTTCGGGTCACTGAACTATGTTCTTCAACGATGACATGCATGAAAGACACTTATCTGGTACATCTGACCTGTTCGTCCTCTAAAACAGCAAGAGAAGACTTAGAATCAGTGGTGAGGAAATTATTCATTCCATATGCTGAAACAGAAACAGACAGGGAAGGACTTAGAAAGCCAAGACTCTTGTGGGCTCTTTATTTTAATATGAGGGATTCCTCAGAAATCAGCAGAAGCTCCTATAATGGCTTACCTTCCAATGTTTATGTCTGCTCTGGGCCTGACTGTGGACTAGGAAATGAGCACGCAGTCAGGCAAGCTCAAACGCTTTTCCAGGAGATCTTTCCAACTGAAGAATTCTGCCCTCCACCTCCTAATCCAGAAGACATTATCTTTGA |
| >XM_001500825.6 |
| CATGACACGTTTCCTGTCAAGATGGCGGATAATCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCGGCTGCATGTTCAAGAAGTGGCCAGAGGGTTCTGCATGTTGATTCAAAAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAGGACTGTTGTCCTGGCTAAAGGAATACCAGGAAAACAGTGACATTGTAAATGAAAGCCCAGCATGGCAAGAGCAGATCCTTGAAAATGAAGAAGCCATTGCTCTTAGCAGGAAGGACAAAACCATTCAACATGTGGAAGTATTTTGCTATGCCAGTCAGGATTTGCATGAAGATGTTGAAGAAGCTGGTGCACTGCAGAAAAATCACGCTGCTGTGACATCCGCGAACTCCACAGAAGCTGCAGATTCTGCTTGCTTGCCTACAGAAGATGAGTCATTAAGCACTGCAAGCTGTGAAAGGCCTGCAGAACAAACTCCAAGCAGTGATGCAGAGAGTGCTCTAGAAGTAAATGATGCTGAAGCGACAGGGGAGAAAGAAAACCATTGTGATGATAAAACTTGTGTGCCATCAACTTCAGAAGAGGAAACAGGTGAAAATGTGCCTACAGTAGAAGACACGGCGGAGCAACCAAAGAAAAATAGGATTACTTACGCACAAATTATTAAAGAAGGCAGGAGATTTAATATTGATTTGGTATCAAAGCTGCTGTACTCTCGAGGATTGCTAATTGATCTTCTAATCAAATCTAATGTTAGTCGATATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGAGAAGGAAGAGTGGAACAGGTGCCTTGTTCCAGAGCAGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTTACATTTTGTATGGAGTATGAGGAACATCCTGATGAATATAAAGCCTATGAGGAGATTACATTTTCTGAATATTTAAAAACTCAAAAATTAACCCCCAACCTCCAATATTTTGTCCTGCATTCAATTGCAATGACATCAGAGACAGCCAGCAGCACCATAGATGGTCTCAAAGCTACCAAAAATTTTCTTCACTGTCTTGGGCGATACGGCAACACTCCATTTTTGTTTCCTTTATATGGCCAAGGAGAACTCCCTCAGTGCTTCTGCAGGATGTGTGCTGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTTGTGGACAAAGAATCCAGAAAATGTAAAGCAATCATAGATCAGTTTGGTCAGAGAATAATCTCTAAGCATTTCCTTGTGGAGGACAGTTACTTTTCTGAGAACACATGCTCGCATGTGCGATACAGGCAGATCTCCAGAGCAGTCCTGATTACAGATAGATCTGTACTAAAAACAGATTCAGACCAACAGATTTCCATTTTGACAGTGCCAGCAGAGGAACCAGGGACTTTTGCTGTTCGGGTCATTGAGTTATGTTCTTCAACAATGACCTGCATGAAAGGCACATATTTGGTTCATTTGACTTGTACATCTTCTAAAACAGCAAGAGAAGATTTGGAACCAGTTGTGCAGAAATTGTTTACTCCATATACCGAAACGGAGATAGAAAATGAAGAAGTTGAAAAGCCAAGACTTCTGTGGGCTCTTTACTTCAATATGAGAGACTCTTCAGACATCAGCAGGAGCTCTTACAATGATTTGCCATCCAACGTTTACGTCTGCTCTGGCCCAGACTGCAGTTTAGGAAGTGATAATGCAGTCAAACAGGCTGAAACCCTTTTCCACCAAATCTGCCCCAATGAAGACTTCTGTCCACCACCACCAAATCCTGAAGACATTATCCTTGATGGAGACAGTGTGCAACCAGAGGCTTCAGAATCCAGTGCCATACCAGAGGCCAATTCAGAGACTCCCAGGGAAAGTGCAAACCTGGGAAACCCAGAGGAGCCCTCTGAATAATGGATATGCACCAAACTGGATACCCCACTTTGGAAATTCCTTCTGGCCTCAGAGTCTTCTTGATGGAAGTACTGTTTGAAAAATGTTAGAAAGCAGCAGCCAGTTGACATGCAGAATTACCAAGAGAAACAGGTCATAGAAATACAAAAGGGGGTTTTCCTTGAAGAGGACATTCCAAGAACACAGAACACTTGTAAAGCACATTGACTTGCTTGCTTTAAGATACCAAACCTGTGGAATTAGCAGATAAAAATTATAAATGGATTGATTCCCAAGAATATAGCTATGGATATGAAAGTGATCCTATGCATCGTTAATAATTCTGTGGTATTAGGACAGCTTTTGCTTGCCACTTTGGATCTTTGTTTGAAAGCCACATCTTCAGAATCAGCTCATATATTTCCTCTGGTTATTTGAATTATATTGTCTTTGTGGGTATGAGTATCATGACACAAATGACAAAAGCATATTAAGTATAGTTGAGAAAAATTAAACTATCGTGATCCAGGCAGGAGCCTATGTTTGGAATAGAGGTTTGTTTTGTTTTCTATCTTGAGAAGTATTGAAAATTCTAATATTAAAGTAGACATTTTTACAAACAAATCGTAAGTCCACTACTCAGTGTTTTTTTAATGTTAGCAGTGATATTTGTATGTGAATCATTTACACACTAGGAGAGCTCAGTACTGAAGAAATGGAAGGAAAGACTTGGATAGGCTTATCAGTATTTGGAAATTCTgtctagtcaagaaactggagcactagcctaatcgactatggacctaatttagtcctagctgtgctactgatattaggcaaattgtttaatttctgggccttggttcctccatatgtaaggtggaaatagtaatactctgtctactgtgcaaatgattttgaagataaatgCAGTGCCATCTTTAGAATGGTTTTTCTGGAAGAAAAGTTGTTTCAGAATTTTCCCCTTAACTTGGAAGTGAATTTCAGAAATCTCCTGCAGCAAATACTTGTTTGCTGTCAACTCCCCCAACACAATAGATGAGTGTTTTTATTGTATTAAGCTTTTAAAATAAAAATCTATTTCCTAAATTAGTATTTTATAGTCTTATACATTAGTAAGCATAGTAAAATGTAGAATTGTGGTTTTGAATCTTAATAAGGAAAACACTCTCTAAGTTCTTCATATTCCTTTTCTGGTAGGTAAACCTGAAACCATCAAGGACTCTGATAGAGTATGACAACTGGTAAGCCCTCATATGCACTTAACATAAAAATGTTCAGGCTGTACATAGGCAGCAAATCTAGTTACAGTGACAGTGCCTATATTAAAATTTTTCCAAATGCCAAGCTCTGATGGTTTACTTTTTTTGAGCAATAGTTTGGACTTAATAACTTACTTCAATAAATAAATACATGAAAAGTTTATTGCCGTGCAGTCTGGCCTATATCGCTGATCAAGGAGCCATGGCTACCATGGAAGCACATAGCTCTTCCACGCTGTAGCTGCAGCGCAGCTCTGACCTCTCCAGATTTCTGCGCAGATCTTAAAGGAAGCTAGCTCTGTTGGCTCACAGACTCATGGGAAATGGAAAGAACCAAGGAATGTAGCTTTTGCCTCACCTTTCCAGACCCCTGCAGATATAGCTCAATCCAGATGAAAGGAAAACCTCCCCAGCCTCTCAGGCTATTCCTAACCCCTCTGCCCATTGTACAGCCCCTCTCCTGTCTCTTTCGTCCCCTTTCCCTCTCTTCCCCTTTTATAATGTTATACAAATCAGGGAcagtaaatcacattaaaacctactttgatatatgaattcagaccttgcttaagtcaaatcatgtttcctaaaacccaactgtggcatgcactaaatgcacaatacatgcctataagcaccggctattggccctgcccctcaataccagcaatataaaaggttccactATATGAgagtattgagtctgaatacaattgcaattaagttgcacaaattaagatattatattttgttatagtcttagaattaaggcctctctgaatgcagcatgcacatttgtgtaaaCAGCTAATCAGGGTAGGCCCAGAATAGCTAGAAAAGTTCTGACAGCTTTACTGCAGCTATCTCTGTGTAGAACAATGAAGGGGATATTCTGTGGTCTCATGGCCCAACCCATATTGTACCCTATTTCATCCGTTAGCTAGCACCAGAATCTCTCTTCCAGGTTATTTATTAAATACTGTTGAAACGTTTAAAAGCTCCTCAATATGGTTAGTGATAATTAAGATACAACTGTTAAAAACATTGTGTTAGAGAACTTTAGATATTTCCTGTTGCCTCAGAATGTAATAGAAATTATTCTAAGAGCTTTCTTTCTAGCTATCTTAATTACTGCAAATAAATAATTTGTTTTCATAGTTTTAAGACGAAAAAAAAAACTTTTTGTTTTGTAAAACTGTAAGCCTGAAGTCATATGAATAAAAATAATACGTTGTAGGTGATGCAGAAATTTCAGTAGCTAATTTAAAATTTTGGAAATTGCTATTATCAAAGAATTTTGATTCGTGTGTTTAAAATGTTTAGTTATGCATGCTTCTTATTAACCAAAAATGATAATGCCATTGAGTTTAGAGATCAATATGAAAACCAATTACTAACCCTATGTTGATACTGTATTTTTGTCTAGTTGGTATGCCTGCCCAGGAAAACatatatatatatattataaacatatatatttttataGGAAAGCTGAGTTATAATTTTTCCCTATCTCCTATGATGTTTAGTTGCCCATAGTAAAATAGCATGTTAACGGTTAACTTCTAGAACGGTAGTTTCTGAGATTGGCAGCCTTTTGTCTAAAATAATGGCCATGCTAATGATTAACTTCTGTTACATCTGTCGTTCCCAAGAAGGCAGCCCTTTGTCTAAAGTCCTTAAGACTTCAAAAAAATTTGTTGAAATTTGATTGCTAAATAGTAGTGATCCTTTAAAGCAGGAATTAAACAATTTTCATACAAATAAGTTATTTACTGCTATTGGTATCAAATAATTTCTCTTCTGCTCTTGGTTAATTTTCTTATATGCATTTCAAAAAGCATGAATACATGATTTATAATTTGCACACTGTAACGGTAATTTTTTCAGAGGAAATAAAGTCTGTTTTCAGTGCC |
| PMID - Link | Title |
|---|
