| Retrocopy Name | CHMP1 |
|
| Species | Sus scrofa | |
| Coordinates | chr10:11839919-11840620 UCSC | |
| Strand | + | |
| Parental Sequence | XM_021080640.1 | |
| Parental seq. overlap | 575 bp | |
| Parental seq. overlap (%) | 11.7% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | CHMP1, located on chr10:11839919-11840620, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHM |
| Full Name | CHM Rab escort protein |
| Also known as | - |
| Coordinate | chrX:68873882-69066284 |
| Strand | - |
| Gene summary | N/A |
| >CHMP1 |
| GAAAGAAAGCAGGAGGTTTAATATTGATTTGGTATCAAAACTGCTTTATTCTCAGGGATTGCTGATTGATCTTTTAATCAAATCCAATGTTAGTCGTTACGCAGAATTTAAAAATGTCACCAGGATTCTTGCGTTTCGAGAAGGCAAAGTGGAACAGGTGCCTTGCTCGCGAGCAGACGTCTTTAATAGCAAAGCGCTCACTATGGTTGAAAAGAGGGTGCTGATGAAATTTCTTACATTTTGTTTAGACTATGAGCGTCATCCTGATGAATACCAAGATTTCATGCAGTGCTCATTTTCCGAGTACTTAAAAGCCAAAAAATTAACCCCCAGCCTCCAACATTTTGTCCTGCACTCAATCGCAATGACCTCGGAGTCGTCTTGCACTACAATAGATGGCCTTAAAGCCACCAAAAACTTTCTTCAGTGTCTTGGACGGTTTGGCAACACTCCCTTTTTATTTCCCTTGTATGGCCAAGGAGAAGTGCCCCAGTGTTTCTGCAGGATGTGTGCGGTTTTCGGTGGAATCTATTGTCTTCGTCATAAAGTGCAGTGCCTTGTAGTTGACAAAGAATCCGGAAGATGTAAGGCCATCATAGATCACTTGGGTCAGAGAATAAGCGCGACCTATTTCATCGTGGAGGATAGTTACCTTTCCGAGGAGACATGCTCGCGTGTGCGGTACAAGCAGATCTCCCGGGC |
| >XM_021080640.1 |
| CCTAGCAATAGTCACATGACACATTTCCTGTCAAGATGGCGGAAAATCTCCCCTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCAGCTGCATGTTCAAGAAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAATTGGGCCAGTTTTAGCTTTTCAGGACTTTTATCCTGGCTAAAGGAACACCAGGAAAACAGTAACATTTTAAGTGAATGCTCAGCATGGCAAGAGAAGATCCTTGAAAATGAAGAAGCCATTGCTCTTAGTAGGAGGGACAAAACCATCCAACATGTGGAAGTATTTTGCTATGCAAGTCAGGATTTGGATGAAGATGTTGAAGAAGCTGGTGCACTGCAGAAAAATCATGCTTCTGTGACATCTGCGAAGTCCACAGAAGCTGCAGATTCTGCCTGCCTGCCTACAGAAGATGAGTCATTAAGCACTGCAAGCTGTGAAATACCCACAGAACAAACTCCAAGGAGTGATCCAAAGAATGCCCTAGAAGTAAATGATGTCGAAGCGACAGGGGAGAAAGAAAACCGTCGTGATGATAAAACTTGTGTGCCATCAACTTCAGAAGAAGAAACAAGTGAAAATGTGCCTATAGCAGAAGATACTGCAGAACAACCAAAGAAAAATAGGATTACTTACTCACAAATTATTAAAGAAGGCAGGAGATTTAATATCGATTTGGTGTCAAAGCTGCTGTATTCTCGAGGATTGCTAATTGATCTTCTAATCAAATCTAATGTTAGTCGATATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGAGAAGGAAGAGTGGAACAGGTTCCTTGCTCCAGAGCAGATGTCTTTAATAGCAAACAGCTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTCCTTACATTTTGTATGGATTATGAGGAATATCCTGATGAATATAAAGCCTATGAGGAAATTTCATTTTCTGAGTATTTAAAAACTCAGAAATTGACCCCCAACCTCCAATACTTTGTCCTGCATTCAATCGCGATGACATCAGAAACAGCCAGCAGTACTATAGATGGTCTCAAAGCTACCCAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCATTTTTGTTTCCTTTATATGGACAAGGAGAGCTCCCTCAGTGTTTCTGCAGGATGTGTGCAGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTTGTGGACAAAGAATCTGGAAAATGTAAAGCAATCATAGATCATTTTGGTCAGAGAATAATTGCTAAGCATTTCATTGTAGAAGACAGTTACTTTTCTGAGAACACATGCTCACGTGTGCAATACAGGCAGATCTCCAGGGCAGTCTTGGTAACAGATAAATCTGTATTAAAAAGCAATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGCAGACGAACCAGGAGCTTTTGCTGTTCGAGTCATTGAGTTATGTTCCTCAACAATGACATGCATGAAAGGCACATGCGGAAGCACTTTTCCAACAAATCTGCCCCAAGGAAGATTTCTGTCCACCGCCACCAAATCCTGAAGACATTATCCTTGAAGGAGACAGTTTACAACCAGAGGCTTTGGAATCCAGTGCCATCCCAGAGGCCAGCTCAGAGACTCCCAAGGAAAGTGCAAATCTAGGAAACCCAGAAGAGCCCTCTGAGTAATGGGTAAACACCAAATTGGATACCACACTTGGAAAATCCTCCTAGCCTCAGTCTTCTTAATGGAAGAACTGTTTGAAAAATATTACAAAGCAACAGCCAGTTGACATGCAGAATTACCAAGATAAGTAGGTCATAGAAATCCAAATGGAGATTTTCCTTAAAGAGGACTTTCCAAGACCACAAAATATTGTAAAGCACATTGACTTGTCTGCTTTAAGAAACCAAACCTGTGGAATTAGCAGATAAAAAGTATAAATGGTTTGATTCCCAGGAATAGAGCTCTAGTTACTGAACTGAATCCTATGCATTGTTAATAATTCTGTGGTGTTAGGACAGCTTTTGCTTGCCACTTTAGATCTTTGTTTGAAACCCGCATCTTCAGAATCAGCTCATATATTTTCTTTGATTATTTGAGTTATATTTTCTTTATGGGTATGAGCATTGTGACACAAATGATAAAAGCCTATGTAAATGTAGTTGAGAAAAAACTCATGTCATGATCCAGGCAGGAGCCCATGTCTGTAATAGAGGTTTGTTTTGTTTTCTATCTTGAGGAGTACCAAAATGCTAATATTAAAGTAGATATTTTTGCAGATGAGTCATGAGTCCATTACTTAGTGTTTTTTATTTTAATGTTAGTAGTGATGTTTGTGTGTGAATCCTGAACTCACTAGGAAAGCTCAATACTGAAGAAACGAAAGATTCAAATAGGCTCATTGGTACTTGGAAATTTTgtcttgtcgagtacctagagcagtagcctaattgagcatggacttaacttagtcctagctatgctactgatgatattaggcaaattgtttaacttctgggcctctgtttctccacatgtaaggtggaaatagtaataccctgcctactgtaggaggatgactttgaagataaatACAGTGCCATCCTTAGAATGGTTTTTCTGGAATAAAAGTTGTTTCAGAATTTCCCTGTTGACTTGGGGGTAAATATCAAAAATCTTATGCAGCAAATAATTGCTTGCTGTCAACTCCCCCAACACCATAGATTACAGTGTTTTTTTATTGCACTAAGCCTTTAAAATAAAAATCTGTTTCCTAAATTAGTATTTTATAGTCTTACAGACGAGCAAACATAGTAAAATGTAGGATTGTGGTTTTGAAACTTATTAAGGAAAACACTCTATAAACTCTTCATATTCTTTTTCTAGTAGGTAAACCTGAAACCACCAAGGACTCTAAATAGAATATGACAATTGATAAACCCTAATATGCACTTAACATAAAAATATAAGGGCTGTACATAGGCAGCAAATCTAGTTACAGTGACAGTGCCTATATTAAAATTTTTCCAAATGCCAAGCTCTGATGGTTTACCTTTTTTTGAGCAATAGTATGGACTTAACTTATTTCACTAAATAAATACAGAAGAAGTTTATTGTTGTGCAGTCTGGCCTATATTGCCAGAGAGCCGTGACTATATTAGAAAGCACATAGTTCTTACTCACATACTTAATGTGCAGCAGGGCTCTGACCTCTCCAGATTTCAGAGATGATCTTAAAATAAGCGAGCTCTGTCTTGTTGCAGACTCATGAGAAATGGAGAGAACCTTTCAAACCCCCTGCAGATACAGCTGAATCCAGAGGAAAACTTTCCCAGGCTCTCAGGCAACTCCCTCCCGATTGCATAGCCTCTCCCCTTTCTCTTTAATCTCTTCTATCCCTCTCTTCCCCTTTTATAATGTTATACAATTCAGGGACAGTAGAATCACTTTATAAACTttgttatatggattcagatctatcttaaatcatatttcctgtaacccaactatggcatgcgctaaaggcacaatacatacctataagctctgggtattggccctgccccgcagtaccagcaatataaaagtttccactATGTGAgagtattgagtctgaagacagctgcaataagttgcacccaataagatattgtactttgctatagtcttagagttaaggcctcttgatgcagcatgcacacttacataaaCAGTCAATTAGAATAGACCCAGAATAACTAGAAAAATTTTGATAGCTTTACTACATACAGCTCTTTATATGTAGAACAATGAAGGAGATATTCTGTGGTCTCATGGCACAGTCCATACTGTACCCTATACATCCATTAACCAGCATCGGAATTTCTCTTCCAGGTTATTTATACTGTTGAAATGTTTAAAAGCTCCTGAATTTCATTAGTGATGATAAGATATTACACAACTGTTAAAAATCCTTGATAGAGAACTTAGTTATTTCCTGTCACCTCAGAATGTAATAGAAATTATTCTAAGAACAATCTTTTCAGCTATCTTAATTACTGCAGATATTTGTTTTCATAGCTTTAAAGAAAAAGTTGTCAGTTTTGTTGTAAAACCATAAACCTGAAGTTCTGTGAATGAAATTTAGATGCTGTACATGATGCAGAAATTTCAGTAGCTAATTTTAAATTTTGAAAATTGCTATTATCAAAGAAATTTGATTCATGTATTTTAAATGTTTATGTTATGCATGCTCCTTATTTATCAAAAATGATTATATCATTCAGTTTACTGATCAATTTTAAAATGGATTACTAACCCTATATTGCTACTGTATTTTTGTCTACTTGGTATGCCTGCCCAGAAAAACATATATATATTTTTTTTTCTATAGGAAAGCTGTTATAGACCCACCTCCTATGATATCTAGCTGCTCATAGAAAAATGGTCATGTTAGTGGTTAACTTCTAGAATAGTGATTTCTGAGATTGGTAGACCTTTGTCTAAAATAATGGCCATGCTGAGGATTAACTTCTGCCACAGCTATAGTTCCGAAGAAGGCAGTCCTTTGTCTAAAGTCCTAAAAACCTAAAAAAAAAATTTGTTGAAATTTGATTGCTAAATAGTAGTGATCCTTTAAAGCAACTTTCTTACAGATCAGTTATTTACTGATATTGGTATTGAATAATCTCTCTCTACTCTTGGTTGACTTTCTTATATACATTTCAACAAGCATGGATACATAATTATTCATAATTTGCACACTGTAACAATAAGGTTTCAGAGGCAATAAAGTCTTTAATGCCTTTCAGGTTTGGTATCCTATTTTTTAATGTTAATATTTTGTATATGCCAAGAAATTAAAGATTGTCTTGGAACTGA |
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