Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CHMP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_23) and its respective parental gene (in scaffold_m16_p_2). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_23:9776323-9776773  UCSC
Strand -
Parental Sequence CHM_x1
Parental seq. overlap 361 bp
Parental seq. overlap (%) 6.5%
Genomic Region Intergenic
Retrocopy Summary CHMP1, located on scaffold_m16_p_23:9776323-9776773, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CHM
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_2:13595344-13761657
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHMP1
Chimpanzee Pan troglodytes CHMP1
Bonobo Pan paniscus CHMP1
Gorilla Gorilla gorilla CHMP1
Orangutan Pongo abelii CHMP1
Gibbon Nomascus leucogenys CHMP1
Green monkey Chlorocebus sabaeus CHMP1
Crab-eating macaque Macaca fascicularis CHMP1
Rhesus Macaca mulatta CHMP1
Baboon Papio anubis CHMP1
Golden snub-nosed monkey Rhinopithecus roxellana CHMP1
Marmoset Callithrix jacchus CHMP1
Mouse lemur Microcebus murinus CHMP3
Rabbit Oryctolagus cuniculus CHMP1
Pig Sus scrofa CHMP1
Cow Bos taurus CHMP1
Sheep Ovis aries CHMP1
Dolphin Tursiops truncatus CHMP1
Horse Equus caballus CHMP1
Dog Canis familiaris CHMP1
Panda Ailuropoda melanoleuca CHMP1
Cat Felis catus CHMP1
Pale spear-nosed bat Phyllostomus discolor CHMP1
Greater mouse-eared bat Myotis myotis CHMP1
Greater horseshoe bat Rhinolophus ferrumequinum CHMP1
Egyptian rousette Rousettus aegyptiacus CHMP1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CHMP1
GTGCAGTACAGGCAGATCTCCAGGGCAGTGCTCATCACAGATCAGTCTGTACTAAAGACAGATTCCGACCAGCAGATTTCCATCTTGGTAGTGCCTCCAGCAGAACCACACACGTGTGCTGTTCGTGTCACTGAATTATCTTCTTCAACCATGACATGCATGAAAGACACCTATCTGGTACATCTCACCTGTTCGTCTTCTAAAACAGCAAGAGAAGACTTAGAACCAGTGGTGAAGACATTATTCACCCCATATGCTGAAACAGAAATAGACAAGGAAGACCTTACAAAGCCAAGACTCTTGTGGGCTCTTTATTTTAATATGAGAGATTCCTCAGGGATCAGCAGGAGCTCGTACAATGGCTTACCTTCCAATGTTTATGTCTGCTCTGGGCCTGACTGTGGGCTGGGAAATGAGCACGCAGTCAAGCAAGCTGAGACCCTTTTCCAGG
>CHM_x1
AGTCACATGACACGTTTCCTGTCAAGATGGCGGATAATCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCGGCTGCATGTTCAAGAAGTGGCCAGAAGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTCAGCTTTTCAGGACTGTTGTCCTGGATAAAGGAATACCAGGAAAGTAGTGGCATTGTGGATGAAAGCCCAGCCTGGCAAGAACAGATCCTTGAAGATGAAGAAGCCATCGCTCTTAGCAAGATGGACAAAACCATTCAACATGTGGAAGTGTTTTGTTATGCCAGTCAGGATTTGCAAGAAGATGTTGAAGAGGCTGGTGCACTGCAGAAAAATCATGCTTCGGCGACATCTGCGAACTCCACAGAAGCTGCAGACTCTGCCTGCCTGCCTACAGAGGATGAGTCACCCAGCACTACGAGCAGCGACGTGCCCGCAGAACAAACTCCACGCAGTGACCCAGGCAGTGCCCCAGAAGGAGCTGAAGCTGAAGTGTCAGGGGAGAAAGAAAACCTCTGTGATGATAAAACTTGTGTGCTGTCAACTTCAGAAGAAGGAACAAGTGAAAATGTGCCTGTAGCAGAAGACATCACAGAACCGCCAAAGAACAATAGGATTACTTACTCGCAAATTGTTAAAGAGGGCAGGAGATTCAATATCGATTTGGTATCAAAGCTGCTGTATTCTCGAGGATTGCTAATTGATCTTCTAATCAAATCTAATGTCAGTCGCTATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGGGAAGGAAGAGTGGAACAGGTTCCTTGTTCAAGAGCAGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTTACTTTTTGTATGGAGTATGAGGAACATCCTGATGAATATAAAGCCTATGAGGAGATGACGTTTTCTGAATATTTAAAAACTCAAAAATTGACTCCCAACCTCCAGCATTTTGTTCTGCATTCAATTGCGATGACATCAGAGACAGCCAGCAGTACCCTAGATGGTCTCAGAGCTACCAAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCGTTTTTGTTTCCTTTATACGGCCAAGGGGAGCTCCCTCAGTGTTTCTGCAGGATGTGTGCTGTATTTGGTGGAATCTATTGTCTTCGCCATTCAGTCCAGTGCCTTGTTGTGGACAAAGAATCCGGAAAATGCAAAGCAATCATAGATCAGTTTGGTCAGAGAATAATCGCTAAGCATTTCCTTGTGGAGGACAGTTACTTTTCTGAGAACACATGTTCCCACGTGCAATACAGGCAAATTTCCAGGGCGGTCCTGATTACAGATAGATCTGTACTACAAGCAGATTCAGATCAGCAGATTTCCATTCTGACAGTGCCCCCAGAGGAACCAGGAACTTCTGCTGTCCGGGTCATTGAGTTATGTTCTTCAACAATGACATGCATGAAAGGCACATATTTGGTTCATTTGACTTGTGCGTCTTCTAAAACAGCAAGAGAAGATTTAGAACCAGTTGTAGAGAAATTGTTTACTCCACATACCGAAATGGAAATAGAAAATGAAGTTGAAAAGCCAAGACTTCTATGGGCTCTTTACTTCAATATGAGAGATTCTTCAGACGTCAGCAGGAACTCTTATCATGATTTACCATCCAACGTTTACATCTGCTCTGGCCCAGACTGTGGTTTAGGAAATGATAATGCCGTCAAACAGGCTGAGAGCCTCTTCCAGCAAATCTGCCCCAATGAAGACTTCTGTCCACCCCCTCCAAATCCTGAAGACATTCTGGATGGAGACAGTTTACAACCAGGGGCTTCCGAATCTGGTGATATACCAGAGGCCAGTTCAGAGACTCCCAAGGAACATGCAAACCCGGAAAAGCCAGAGGAGCCCTCTGAATAACAGATACGCACCAAATTGTATGCCCCACTTTGGAAATTTCTCCTGGCCTGTCTTCTTGATCGACCAACTGTTTGAAAACTTTTATAAAGCAGCAGTCCGTTGTCATGCAGAATTACCGAGAGAAACAAGTCACAGAAATCCAAAAGGGGATTTTCCTTAAACAGGACATTCCAAGAACACAAAATACTTGTAAAGCACATTGACTCACCTGCTTAAATTAGAAATGAATTGATTCCCAGGAAGACAGTTTTGGAGATGAAAGTGATCCTAGGCATTGTCGATAATTCTGTGCTTTTGGGACAGCATTTGCTTTGCCACTTTGGATCTTTGTTTGAAAGCCACATCTTCAGACTCAGCTCACTTATTTCCTTTGATTATTTGAATTATATTTTCTTGAAGGGTCTGAGCATCATGATGCAGATAATAAAAGCGTATGTAAATGTGATTGAGAAAAACGAAAGTATCATGAACTGGCAGGAACCCATGTTTGGAACAGAAGTTTGTATTGTTTTCTTGAGAAGAATTAAAATGCTAATATTGAAGTAGATATTTTTTAGAGAttttttttttaatcctcacctggggatatgtttttattgattttacagagagaggaaaggagagagagacagggaaacatcaatttgttgcttcctgtatgtgccccagatcaaacccgcaactcggacatgtgccctgacccggaaattgaacccacaacccttttggtgtacaggacaacactctaaccaccggagccacccagccggtgcAGTAGATGTTTTTAACAAAGAAATCATGAGTCCGTTACTCAGTGTTTTTTAAATGTTAGTAGTGATTTTTATACATGAATCATTTATACACTAGGAAAGCTCAATACTGAACAAGTGGAAGGAAAGATCTGGATAGGTCTTTGGAAATTCTGTAAGTAACTGGAGCACTAGCCTAATTGTCTGTAGACCTAATTCAGTCCTGCTACACTACTGATGATGTTAGACAAACTGTTTGACTTCTGGGCCCCAGTGTCTCCATAGGTAAGGCAGAAATAGCAATACCCTGCCTATTCTATGGGCATGATTTTGAAGAGCAATGCAGTGCCATCTTTAGAATGTTTTTTTCTAGAGGAAACGTTTCGAAAATGTTCCCAGTGACTTGAAGGTGACTATCAAAATCTCATGCAGCCAACAGTTATTGCCAGCAAATAAATGTTTGCTGTCCACTTCCCCAAGACAATAGATCACAGTGTTTTTATTGCATTAAGCTTTAAAACGAAATCTCCATTTCCTGTATTAGTATTTTATAGCTTTATAGGCCAGTAAACATAGCAACATACGGAATTTTGGGTTTTGCATCTTAATAAGGAAAACACTTAACAAGGAAAATTCTTCATATTTCTGTCGTGGTACGTAAACCTGACACCACCAAGGGCTCTGAATAGAATACAACAATTGGTAAACCCTAGTATGCACTGAACATAAATGTTAAGGCTGTACATTGGGAGCAAATCTAGTTACAGGGACAGTGACTATTAACATTTTTTTTTCCCCCAAATGCCAGGCTCTGATGGTTTACTTTTTGGAGCAATAGTTTGGATTTAACAACTTATTTCAATATATAAATAAATACATGAGATGTTTATTGCTGTGCAGTTTGCCCTGGACTGCCGACCAGAGAGCCATGACTATAGGAGAAAGCACATAGTTCTTCCACACTTCAGCTGCAGGATCTCTGACCTCTCCAGATTCCAGGGAAGATCCtttctttttaaatatgttcttattgatttttttttagagagaggaagggagatctagaaacatcaatgtgagagagaaacatggataggctgcctcctacactccccatactggggatggagcctacaactcgggcatgtgccctgacggggaatcgaaccaggacctctcagtccatgggaggacactcagtccactgagccacaccagccaagTAATTTCAGGAAAGATCTTAAAGGAAGTTAGCTCTGTCAGGTCACAGACTCATAGGAAATGGAAGGAACCAAGGGATGTATCTGTTGCCTCACCTTTCCAACCTCCTGCAGATAGAGGGGAATCCAGATGCAAGGGAAACCGTTTCCAGCCTCTCGGGCCACTCCTAACCCCTCTCTGTGATTCCTTCTTTCTCTCTCTTCCCTTTTTGTGATACTATACAGATCAGGGAcagtttaaccacgtcatcatctactttgttatctggattcagatctttctgaagtcaaatcatgtttcctaaatcctaactacagcatatgctaaatgcacaatacatacctataaggcccagatattgaccctgctcctcaataccagcaatataaaaggttccactAGATGAGAGTAGGgagtctgactacaactgcagtaagttgcactaattaagatattgtactatgttatagtcgtagagttgaggcctcctgaagacagcatgcacacttacgtaaaCAACCAGTCAGCATAGGCCAAGAATAAATAGAAAAATTCTGATAGCTTTACCGCAGCTATCTGTGTGTAGAACAATGAAGGAGATAGTTTGTGGTTTCCTGGCTAAACACATATTTTACCCGATTTCATCCATTAACCAGCATCAGAATCTCTCTTCCAGGTTATTAAATGCTGTTGAAATGTTTAAAAGCTCCTGAATATGATTAGTGATGATTAATATATTACACAACTATTAAAAACCTTGTGTTAGAGAACTTGAGATATTTCGTGTTGCCTCAAAATATAATAGAAATGATTTTAAGAACTTTTCTTTTCAGCTATCGTAATGACTGCAAATAAATAGTTGTTCATAGTTTTAAGTAAAAAAAAAAAGAAATTTATTTTAGTTTTGTTGTAAAACCATAAGCCTGAAGTCATATGAATACAATTAATAGGTTGTACATGATGCAGAAATTTCAGTACCTAATGTAAAAATTTCTAAATTGCTATTATCAAGTATTTTGATTCATGTGTTTAAAGTGTTTAGTTATGCATGCTTCTCATTAACCAAAAATGATTAATACCATTCAGTTTAGTGATTAATATGAAACTAATTACTAACCTTATGTTGCTACTGTATTTTTGTCTAGTTGCTATGCCTGTCCAGAAAACCAAatatatatatacatatatttttctataGGGAAGCTGAGTTTCAACTCCTGTGACATTTGGTTCCCGTAGTAAAATCGCCACATTAATGATTAACCCTAGAATGGTAGTTCCTGAGGTCGGCAGCGCTTTGTCTAAAATAATGGCCTTGCTAATGATTACTTCTATCACAGCTATAGTTCCTGAGAAGGCAGCCCTTTGTCTAAAGACCTGAAGACCTCAAAATATTTTGTTAAAATTGGATTGCTAAAAGTATTGATCCTTTAAAGCAGGAATTAAATAATTTTCTTACAAACAAGTTACTGCTATCGGTATTGAATAATTTATCTCTCTACTCTTGGTTAGTTGTCTTATGTGCATATCAAAAAGCATGAATGTATGATTATTCATAATTTGCACACTGTAACAGTAAGTTTTCAAAGGAAATAAAGAAAAGTGTTTTCAATGCC

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