| Retrocopy Name | CHMP1 |
|
| Species | Bos taurus | |
| Coordinates | chr16:35144297-35144918 UCSC | |
| Strand | + | |
| Parental Sequence | NM_001205389.1 | |
| Parental seq. overlap | 506 bp | |
| Parental seq. overlap (%) | 9.7% | |
| Genomic Region |
Intragenic (CHML) |
|
| Retrocopy Summary | CHMP1, located on chr16:35144297-35144918, is a retrocopy of the parental gene CHM. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHM |
| Full Name | CHM Rab escort protein |
| Also known as | - |
| Coordinate | chrX:66151858-66401673 |
| Strand | + |
| Gene summary | N/A |
| >CHMP1 |
| GTAGATGGCCTTAAAGCAACAAAAACCTTTCTTCAGTGTCTTGGACGGTTTGGCAACACTCCCTTTTTATTTCCCTTATATGGCCAAGGTGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTCGGTGGGATATATTGTCTTCGCCATAAAGTACAATGCCTTGTAGTTGACAGAGAATCTGGAAGATGTAAAGCAATTATAGATCACCTTGGTCAAAGGATAAATGCTAAATATTTCATTGTGGAAGATAGTTACCTGTCTGAGGAAACATGTTCAAGTGTGCAGTACAAGCAGATATCCAGGGCAGTGCTCATTACAGATCAGTCTGTCCTAAAGACAGATTCAGATCAGCAGATTTCCATTTTGATAGTACCTCCGGTGGAACCAGGAGCATATGCTGTCCGAATCATTGAATTGTGTTCTTCAACCATGACATGCATGAAAGACACCTACCTGGTACATCTGACCTGTTCATCTTCCAAAACAGCAAGAGAAGACTTAGAATCAGTGGTGAAGAAATTATTCACCCCATATTCTGAGACAGAAGTAGACAATGAAGAACTTCCAAAGCCAGGACTCTTGTGGGCTCTTTATTTTAACATGAGAGATTCCTCAG |
| >NM_001205389.1 |
| AACAGTCACATGACACGTTTCCTGTCAAGATGGCGGATAATCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCAGCTGCATGTTCAAGAAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAGGTCTGTTGTCCTGGCTAAAGGAACACCAGGAAAACAGTGATATTGTGAATGAATGTCCAGCATGGCAAGAGAAGATCCATGAAAATGAAGAAGCTATTGCTCTTAGCAGGACAGACAAAACCATTCAACATGTGGAAGTGTTTTGTTATGCATGTCAGGATTTGCATGAAGATGTCGAAGAAGCTGGTGCACTACAGAAAAATCACGCTTCTGTGACATCTGTGAACTGCACCGAAGCTGCAGATTCTGCCTGCCTGCCTGTAGAAGATGAGTCATTAAGAACTACAAGCTGTGAAATACCGGCAGAACAAACTCCAAGCAGTGATCCAGAGAGAGCCCTAGAAGTAAATGATGTTCAAGTGACAGGGGAAAAAGAAAACTGTTGTGATGATAACACTTGTGTGCCCTCAACTGCAGAAAAGGAAACAAGTGAAAATGTACCTGTGGCCGAAGACACAGCAGAACAGCCAAAGAAAAATCGGATTACTTACTCTCAAATCATTAAAGAAGGCAGGAGGTTTAATATCGATTTGGTATCAAAGCTATTGTATTCTCGAGGATTGCTGATTGATCTTCTAATCAAATCTAATGTTAGTCGATATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGAGAAGGAAGAGTGAAACAGGTTCCTTGCTCCAGAGCAGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTCACATTTTGTATGGAGTATGAGGAACATCCTGATGAATATAAAGCCTATGAGGAAATTACATTTTCTGAATATTTAAAAACTCAAAAATTAACCCCCAACCTCCAATATTTTGTTCTGCACTCAATGGCAATGACATCAGAGACAGGCAGCAGTACCATAGATGGTCTCAAAGCTACTAAGAACTTTCTTCACTCTCTTGGGCGATATGGCAACACTCCATTTTTATTTCCTTTATATGGTCAAGGAGAACTCCCTCAGTGTTTCTGCAGAATGTGTGCAGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTTGTGGATAAAGAATCTGGAAAATGTAAAGCAATCATAGATCAGTATGGTCAGAGAATAATCTCTAAGCATTTCCTTGTGGAAGACAGTTATTTGTCTGAGAACACATGTGCACATGTGCAATACAGGCAGATCTCCAGGGCAATCTTGATTACAGATAGATCTGTTCTCAAAACAGATTCAGATCAACAGATTTCCATTTTAACAGTGCCAGCAGAGGAACCAGGAACTTTTGCTGTTCGAGTCATTGAGTTATGTTCATCAACAATGACATGCATGAAAGGCTCATATTTGGTTCATTTGACTTGTACATCTTCTAAAACAGCAAGAGAAGATTTAGAACCAGTTGTGCAGAAATTGTTTACTCCATATACCGAAACGGAGATAGAAAATGAAGAAATTGAAAAGCCAAGACTTCTATGGGGTCTTTACTTCAATATGAGAGATTCTTCAGATGTCAACAGGAACACTTATAATGATTTACCATCAAATGTTTATGTCTGCTCTGGCCCAGACTGTGCTTTAGGAAATGATAATGCAGTCAAACAGGCTGAAGCACTTTTCCAACAAATCTGCCCCAACGAAGACTTCTGTCCTCCCCCACCGAATCCTGAAGACATTATCCTTGATGGAGACAGTTTACAACCAGAGGCTTCAGAATCCAGTGCCTTACCAGAGGCCAGCTCAGAGACTCCCAAAGAAAGCTCAAATCTGAGAAACCCAGAGGAGCCCTCTAAATAATGAGTATATACCAAACTGGATACCACGCTGTGGAAAATCCTCCTAGCCTGAGAGTCTTCTTGATGGAAGAACTGTTTGAAAAATGTTACAAAACAGCAGCCAGTTAACATGCAGAATTACCAGTAAAAACAATAAAAGATATCCAAAAGGGGATTTTCCTTAAAGAGGACATTCTAAGACCACAAAACACGTTGTAAAGCACATTGACTTGCCTGCTTTAAGATACCAAACCTGTGGAATTAGCAGATAAAAATTATAAAGTGGATTGATTCCCAAAAATACAGCTATGTTAATGAAAGTAATCCTATGCATTATTAATAATTCCGTGGTATTAGGACAGTTCTGCCTGCCACTTTGCTTGAAAGCCACATATTTGGAATTGGCTCCCAAATTTCCTTTGATTATTTGAGTTATATTTTCTTTATGGGTGTGAGCATCGTGACACAAATGATGAAAGTATATGTAGATATAGTTGAAAAAAATTAAAGTGTCATAATCCAAGAAGGAGCCTGTGTTTGAAATAGAGGTTTGTTTTGTTCTCTATCTTGAGGAGAATTGAAGATACTATATTAAAGTAGACACTTTTACAAACAAGTCATGAGTCCCTTACTCAGtgtttttgtttttttttttaatgttaatagtatttgtatttgAGTCCTGAACATTCTACGAAGCTTAGTACTAGAGAAATGAAAGGAAAGATTTGAATAGGCTCCTTTGGTGTTTGGAAATTCTTTCTAGTTGAGCACCATTTCATCCTAGCTATGCTGATATTAGGCAAATATGATGATATTTGCAAATTGCCTAATATGATGATATTAGGCAAATTGTGTACTTTCTGCAGCTCAGTTTCTCCACATGAGTACTGTATAAGAATTATTTTGAAGATATATGCAGTGCTATCCTTAGAATTATTTTTCTGGAATAAAAATTCTTTCAGAATTTTCTCATTGACTTGGGGGTGAATATCAGATCTCATGCAGCAAATAATTGTTTGCTGTCACTTCCCCCAACACAATAAATCACAGTGTTTTTATTGCATTAAGCTTTTAAAATCAAAATCTATTTCTTAAATTAGTATTTAATATTCTTATAGAAAAGTAAACAAAGTAACATATAGAATTATGGTTTTAAATCTTAATAAGGAAAACACTCTATAAACTCTTCATATTCCTTTTCTAGTAATTAGACCTGAAACCACCAATGACTCTAAACAGAATATGACAATTGATAAACCCTAATATGCACTTAACATAAAAATATAAGGGCTGTGAATAGACAGCAAATCTAGGTACAGTGAGTGCCTGTATTAAAATCTTTCCAAATGCTGAGCTCTGATGATTTCCCTTCTTTGAGCAATAGTTTGGACTTAACAACTTATTTGAATAAATAAATTCATTGAAAGTGTATTGTCATGCTGTCTGGCCTGTATTGCTGATCAGAGAGCCATGGCTACAGTAGAAAGCACATAGTTCTTACATTCTTCAGCTGTAGCAGGGCTTTGACCTCTCCAGATTTCAGCCGGCTCTTTAAGGTCACAGACTCATGAGAAATGGAAAGAATGTAGCTCTTGCCTCAACTTTTAACCCCCCAGCAGGGTTTAAAGTCAGCAGATATAGCTGAATCCAGAGGAAAATCTTCCAAGCCTCTCAGGCTACTTCTAACCCCTCTCCCCATTGCACAGCCTTTACCCTATCTCTTTAATCCCCTCTATCCCTCTCTTCCCTTTTTATAATGTTATACAAATCAGGGAcaatagaattacattataacctactttgttatgtggattcagatctgtcttaaattatatttcctgaaacccaactatggcatgtgctaaatgcacaatatacacctataagcactgggtattggtcctgccctgcagtaccagcaatataaaaggttccactATATGAgagcattgagtttgaatacaaatgcagtaagctgtaccaattaaaatattgtactttgttatagtcttatactttgttatagtcttagagttaaggcctcttgatatatcatgcacacttaagtaaaCAGCCAATCAGGGTAGACCCAGAATAACTAGAAAAATTCTGATAGCTTTACTATAGTTCTCTGAACAATGAAGGATACTCTGTGGTCTTGTGGCCCAATCTATACTGTACCCTTTTTCATCCATTAGCCAGTATCAGAATTTCTCTTCTGGATTATTTATTAATACTGTTGAAATGTTTAAAAGCTCCTGAATATCATTAGTTATGATTAAGATAATACACAGCTGTTTAAAACTTTGTGTTAGAAAACTTTAGATACTTCCTTTTGCCTCAGAATATAATAGAAATTATTCTAAAAACATTATTTTCAGCTGTCTTACTGAAAATACTTGTTTTCATAGCTTTAAAGAAAAGCCTTTCGGTTTTATTGTAAAACCATAAGCATGAAGTCATATGAATAAAATTTAGATGTTTGTACATGATGCGGAAATTTCATTTGCTAATTTTAAATTTTGAAAATTGCTGTTATCAAAGAATTGTTATTCCTGTGTTTAAAATGTTTGTGTTATGCATGCTTCTTATTAGCCAAAAGTGATAATACCATTCAGTTCAGTCATCAATATGAAAACAGATTACTAACCCTATGTTGCTACTGTATTTTTGTCTAGTTGGTATGCCTGCCCAGaaaaaaaaaataaaaattaaaaaaatatatatatatataataaacatatatTTTTCTACAGGAAAACTGAGTTATAATTTTCCCATCTGCTATTATACTTAGCTGCTTATAGAAAAATGGTCATGTTAATGGTTAACTTTTGGAATAGTAATTTCTGAGATTGGCAGCCCTCTGCCCAAAATAATGAGCATGCTAATTATTAACTTCTGTCACAGCTATAGTTCTGGAGAAAGCAAAGTATGTCTAAAGTCCTAAAAACCTCAAAAAAAATTTTTTGTTGAAATTTTATTGCTAAATAGTAATGATACTTTAAAGCAATTTTCTTACAGATAAGTATTTACTCCCATTAGGATAATTTCTCTCAACTTCTGATTGATTTTCTTAAGTGCATTTCAGAAAGCATGAATATATGGTTATTAGTAATTTGCACACTGTAACAGTAAGTTTTCAGAGGAAATAGTCTGTTTTAACACCTTTCAGGTGTGGTATCCTATTTTTTAATATTAAAATTTTGTATATATGCCAAGAAATTAAAAATTGTCCTGAAAATG 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